Rh7CG395500

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000560
Physical Location & Seq
Reverse (-)
50363698 .. 50364730
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG395500.1

Sequence Viewer

Length: 960 bp
ATGTCAACAACAACCCCAGAGCCTCTTGCAGAGGGTAAGAAGAAAGGAACCAGTTATGTTCCTGCTACAGAGAAAGCTCCAGCAACTACATCTGACAAGCTACCTCTAGGAGTCAAGAGGAACTCTCAAGTTGAGAAGTTGAAAGTTGAAGTCCTGAGAAACAAGCTACCTCCTTTTTCCTCGAAGAGTTGGACTACCATGAAGGAGTACCACATGACTCATTCGGCTTTAGCTTTATACGGGCCGACGTGGGAAGAACTTGTTACTATGAAGGCTTTAACAGAAAACCCAGGGCTTGAGCCTTTGATGGTGCAAAGTACATCAAGTGCAGGATTGAAGATTTTGTATCAGGCACAATTAGATGGTGTGGAGTTGTTGGCGGACATTGTTAATTTACCAGTATCCCAACGAGATCTCAAGTATCTCAAGGAGTACCACAAAATGTATTCGATTATCAGTACATATGGAGTAACTCCACAAGAGAGAAAGTTGTTGGTGAAGATGGAAGAACGCATTCGCCAACGAGAACTTGAATATGCCACGGAGCTGGGCAAGGGAGATTCTGATTTTGAGTTGGAAGAAGAACTGGCAAACATGGACATAGACTGCAATGAGACTTATCAACAAATCAGTTCTCTTGTGTGCAATGGAAAAGCCAACCAAGTACCGGCTGATGGAAAATTCCATATTGAAGATGAGCAGCCAATGATTGAGGTAGAAGAAGAGCCAGAATTTGAGAAGCCAACTTATGTTAGCTTCGAAGAAGACTTCATTATCCATGATGAAGACCTCACTGGCTGTGGCGGAAGCTTCAATAGCCGCGACCATGGTGAAGACCTCACCGGTCACTGTGAAAGTGGTGAGGTGGATGAAGGAGTTGTAGCGTCATCATCACTGAATCAGCGCAGCCTGACCAGCCACAGTCAATGGAAGGGGATGCTGAGGATACAGTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

319

Amino Acids

35.92

Weight (kDa)

4.83

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 822
AciI CCGC 3 cut(s) 380, 804, 820
AcsI RAATTY 2 cut(s) 680, 731
AfaI GTAC 5 cut(s) 209, 319, 434, 460, 666
AfiI CCNNNNNNNGG 2 cut(s) 667, 674
AgeI ACCGGT 1 cut(s) 842
AgsI TTSAA 6 cut(s) 142, 149, 337, 533, 692, 814
AjiI CACGTC 1 cut(s) 249
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 77, 100, 166, 233, 547, 756, 810
AluI AGCT 7 cut(s) 77, 100, 166, 233, 547, 756, 810
Alw26I GTCTC 1 cut(s) 608
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 700, 906
ApoI RAATTY 2 cut(s) 680, 731
AsiGI ACCGGT 1 cut(s) 842
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 508, 832, 842, 872
AsuII TTCGAA 1 cut(s) 759
BbsI GAAGAC 3 cut(s) 771, 792, 840
BbvCI CCTCAGC 1 cut(s) 941
BbvI GCAGC 2 cut(s) 712, 918
BccI CCATC 4 cut(s) 301, 356, 496, 668
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 2 cut(s) 412, 939
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 66
BfuI GTATCC 2 cut(s) 412, 939
BglII AGATCT 1 cut(s) 412
BisI GCNGC 3 cut(s) 701, 820, 907
BlsI GCNGC 3 cut(s) 702, 821, 908
Bme1390I CCNGG 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 927
BpiI GAAGAC 3 cut(s) 771, 792, 840
BplI GAGNNNNNCTC 2 cut(s) 109, 141
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 941
Bpu14I TTCGAA 1 cut(s) 759
BpuEI CTTGAG 4 cut(s) 111, 317, 401, 410
BsaJI CCNNGG 4 cut(s) 289, 290, 540, 826
BsaWI WCCGGW 1 cut(s) 842
Bsc4I CCNNNNNNNGG 2 cut(s) 667, 674
Bse118I RCCGGY 2 cut(s) 667, 842
Bse1I ACTGG 4 cut(s) 51, 398, 591, 799
Bse3DI GCAATG 2 cut(s) 616, 652
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 289, 290, 540, 826
BseGI GGATG 2 cut(s) 874, 942
BseLI CCNNNNNNNGG 2 cut(s) 667, 674
BseMI GCAATG 2 cut(s) 616, 652
BseMII CTCAG 2 cut(s) 146, 932
BseNI ACTGG 4 cut(s) 51, 398, 591, 799
BseXI GCAGC 2 cut(s) 712, 918
BseYI CCCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 822
BshFI GGCC 1 cut(s) 244
BshTI ACCGGT 1 cut(s) 842
BsiSI CCGG 2 cut(s) 668, 843
BslI CCNNNNNNNGG 2 cut(s) 667, 674
BsmAI GTCTC 1 cut(s) 608
BsmI GAATGC 1 cut(s) 513
BsnI GGCC 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 759
Bsp143I GATC 1 cut(s) 412
Bsp19I CCATGG 1 cut(s) 826
BspACI CCGC 3 cut(s) 380, 804, 820
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 2 cut(s) 147, 933
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 717
BspT104I TTCGAA 1 cut(s) 759
BsrDI GCAATG 2 cut(s) 616, 652
BsrFI RCCGGY 2 cut(s) 667, 842
BsrI ACTGG 4 cut(s) 51, 398, 591, 799
BssAI RCCGGY 2 cut(s) 667, 842
BssECI CCNNGG 4 cut(s) 289, 290, 540, 826
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 826
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 851, 923, 951
Bst6I CTCTTC 2 cut(s) 179, 717
BstBI TTCGAA 1 cut(s) 759
BstDEI CTNAG 2 cut(s) 155, 941
BstDSI CCRYGG 2 cut(s) 540, 826
BstF5I GGATG 2 cut(s) 874, 942
BstFNI CGCG 1 cut(s) 822
BstHHI GCGC 1 cut(s) 906
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 2 cut(s) 816, 915
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 2 cut(s) 712, 918
BstV2I GAAGAC 3 cut(s) 771, 792, 840
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 1 cut(s) 412
BsuI GTATCC 2 cut(s) 412, 939
BsuRI GGCC 1 cut(s) 244
BtgI CCRYGG 2 cut(s) 540, 826
BtrI CACGTC 1 cut(s) 249
BtsCI GGATG 2 cut(s) 874, 942
BtsIMutI CAGTG 3 cut(s) 792, 847, 893
CfoI GCGC 1 cut(s) 906
Cfr10I RCCGGY 2 cut(s) 667, 842
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 873
Csp6I GTAC 5 cut(s) 208, 318, 433, 459, 665
CspAI ACCGGT 1 cut(s) 842
CviAII CATG 5 cut(s) 199, 214, 595, 779, 827
CviQI GTAC 5 cut(s) 208, 318, 433, 459, 665
DdeI CTNAG 2 cut(s) 155, 941
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 179, 717
EarI CTCTTC 2 cut(s) 179, 717
EciI GGCGGA 2 cut(s) 395, 819
Eco130I CCWWGG 1 cut(s) 826
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 5 cut(s) 202, 217, 598, 782, 830
FatI CATG 5 cut(s) 198, 213, 594, 778, 826
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 3 cut(s) 701, 820, 907
FokI GGATG 2 cut(s) 881, 949
Fsp4HI GCNGC 3 cut(s) 701, 820, 907
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 905
GluI GCNGC 3 cut(s) 701, 820, 907
GsaI CCCAGC 1 cut(s) 551
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 668, 843
HgaI GACGC 1 cut(s) 873
HhaI GCGC 1 cut(s) 906
Hin1II CATG 5 cut(s) 202, 217, 598, 782, 830
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 4 cut(s) 111, 217, 560, 898
HpaII CCGG 2 cut(s) 668, 843
HphI GGTGA 4 cut(s) 508, 832, 842, 872
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 94, 565
Hpy188III TCNNGA 2 cut(s) 115, 154
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 196, 265, 866, 925
HpyCH4III ACNGT 3 cut(s) 851, 923, 951
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 29, 313, 329, 609, 645
HpyF10VI GCNNNNNNNGC 2 cut(s) 816, 915
HpyF3I CTNAG 2 cut(s) 155, 941
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 5 cut(s) 202, 217, 598, 782, 830
HspAI GCGC 1 cut(s) 904
Kzo9I GATC 1 cut(s) 412
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 2 cut(s) 82, 544
Lsp1109I GCAGC 2 cut(s) 712, 918
LweI GCATC 1 cut(s) 927
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 262, 469, 845
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MflI RGATCY 1 cut(s) 412
MluCI AATT 4 cut(s) 356, 391, 680, 731
MlyI GAGTC 2 cut(s) 120, 211
MmeI TCCRAC 2 cut(s) 170, 555
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 2 cut(s) 278, 390
MspI CCGG 2 cut(s) 668, 843
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 513
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 2 cut(s) 816, 915
NcoI CCATGG 1 cut(s) 826
NdeI CATATG 1 cut(s) 463
NdeII GATC 1 cut(s) 412
NlaIII CATG 5 cut(s) 202, 217, 598, 782, 830
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 845
NspV TTCGAA 1 cut(s) 759
PasI CCCWGGG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 717
PctI GAATGC 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 560, 898
PinAI ACCGGT 1 cut(s) 842
PkrI GCNGC 3 cut(s) 702, 821, 908
PleI GAGTC 2 cut(s) 119, 211
PpsI GAGTC 2 cut(s) 119, 211
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 5 cut(s) 209, 319, 434, 460, 666
RsaNI GTAC 5 cut(s) 208, 318, 433, 459, 665
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 2 cut(s) 278, 390
SatI GCNGC 3 cut(s) 701, 820, 907
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 120, 211
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 1 cut(s) 927
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 1 cut(s) 759
SmlI CTYRAG 4 cut(s) 126, 296, 416, 425
SmoI CTYRAG 4 cut(s) 126, 296, 416, 425
Sse9I AATT 4 cut(s) 356, 391, 680, 731
SsiI CCGC 3 cut(s) 380, 804, 820
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 3 cut(s) 851, 923, 951
TaiI ACGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 182, 449, 759
TasI AATT 4 cut(s) 356, 391, 680, 731
TatI WGTACW 2 cut(s) 317, 458
TauI GCSGC 1 cut(s) 822
TfiI GAWTC 2 cut(s) 560, 898
Tru1I TTAA 2 cut(s) 278, 390
Tru9I TTAA 2 cut(s) 278, 390
TscAI CASTG 3 cut(s) 799, 854, 900
TseFI GTSAC 1 cut(s) 845
TseI GCWGC 2 cut(s) 700, 906
Tsp45I GTSAC 1 cut(s) 845
TspDTI ATGAA 5 cut(s) 215, 284, 760, 798, 885
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 3 cut(s) 799, 854, 900
XapI RAATTY 2 cut(s) 680, 731
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.