Rh7CG199900

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000560
Physical Location & Seq
Forward (+)
17778797 .. 17779330
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG199900.1

Sequence Viewer

Length: 534 bp
ATGAAGGAGTACCACAGGACTCATTCGGCTTTAGCTTTATATGGGCCAACGTGGGAAGAACTTGATACTATGAAGGCTTTAATAGAAAACCCAGGGCTTGAGCCTTTGATGGTGCAAAGTACATCAAGTACAGGGTTGAAGATTTTGTATCAGGCACAATTAGATGGTGTGGAGTTGGTGGCGGACACTGTTGATTTACCAGTATCCCAGCGAGATCTCAAGTATCTCAAGGAGTACCACAAAATGTATTCGGTTATCAGTACATATGGAGTAACTCCACAAGAGAGGAGGTTGTTGGTGAAGATGGAAGAACGCATTCGCCAACGAGAACTTGAATATGCTGCGGAGCTCGGCAAGGGAGATTCTGATTTTGAGTTGGAAGAGGAACTAGCAAACATGGACATAGAATGCAATAACACTCATCAACAAACCAGTTCTCTTGTGTGCGATGGAAAAGCCAGCCAAGTACCGGCTGATGGAAAATTCCATATTGAAGATGAGCAGCCAATGATTGAGGTAGAAGAAGAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

177

Amino Acids

20.21

Weight (kDa)

4.56

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 182, 344
AcsI RAATTY 1 cut(s) 482
AfaI GTAC 6 cut(s) 11, 121, 130, 236, 262, 468
AfiI CCNNNNNNNGG 2 cut(s) 469, 476
AgsI TTSAA 3 cut(s) 139, 335, 494
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 35, 349
AluI AGCT 2 cut(s) 35, 349
Alw21I GWGCWC 1 cut(s) 351
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 341, 502
ApoI RAATTY 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 310
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 328, 514
BccI CCATC 5 cut(s) 103, 158, 298, 443, 470
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 214
BfaI CTAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 214
BglII AGATCT 1 cut(s) 214
BisI GCNGC 2 cut(s) 342, 503
BlsI GCNGC 2 cut(s) 343, 504
Bme1390I CCNGG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 93
BpuEI CTTGAG 3 cut(s) 119, 203, 212
BsaJI CCNNGG 2 cut(s) 91, 92
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 476
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 2 cut(s) 200, 432
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 91, 92
BseLI CCNNNNNNNGG 2 cut(s) 469, 476
BseNI ACTGG 2 cut(s) 200, 432
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 2 cut(s) 328, 514
BseYI CCCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 469, 476
BsmI GAATGC 2 cut(s) 315, 413
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 182, 344
BspANI GGCC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 2 cut(s) 200, 432
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 91, 92
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 375, 519
BstC8I GCNNGC 1 cut(s) 460
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 328, 514
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 46
BtgZI GCGATG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 6 cut(s) 10, 120, 129, 235, 261, 467
CviAII CATG 1 cut(s) 397
CviQI GTAC 6 cut(s) 10, 120, 129, 235, 261, 467
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 375, 519
EarI CTCTTC 2 cut(s) 375, 519
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 1 cut(s) 400
FatI CATG 1 cut(s) 396
FauNDI CATATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 342, 503
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 342, 503
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 342, 503
GsaI CCCAGC 1 cut(s) 211
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 470
Hin1II CATG 1 cut(s) 400
HinfI GANTC 2 cut(s) 19, 362
HpaII CCGG 1 cut(s) 470
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 115, 411
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 400
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 9 cut(s) 78, 105, 117, 137, 213, 221, 445, 472, 483
Lsp1109I GCAGC 2 cut(s) 328, 514
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 7 cut(s) 68, 151, 313, 320, 392, 506, 533
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 2 cut(s) 158, 482
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 4 cut(s) 279, 282, 376, 508
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 1 cut(s) 80
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 2 cut(s) 315, 413
MvaI CCWGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 265
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 400
NmeAIII GCCGAG 1 cut(s) 330
PasI CCCWGGG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 519
PctI GAATGC 2 cut(s) 315, 413
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 2 cut(s) 343, 504
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 91
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 6 cut(s) 11, 121, 130, 236, 262, 468
RsaNI GTAC 6 cut(s) 10, 120, 129, 235, 261, 467
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 342, 503
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 351
SetI ASST 5 cut(s) 37, 53, 293, 351, 519
SmlI CTYRAG 3 cut(s) 98, 218, 227
SmoI CTYRAG 3 cut(s) 98, 218, 227
Sse9I AATT 2 cut(s) 158, 482
SsiI CCGC 2 cut(s) 182, 344
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 53
TasI AATT 2 cut(s) 158, 482
TatI WGTACW 3 cut(s) 119, 128, 260
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 193
TseI GCWGC 2 cut(s) 341, 502
TspDTI ATGAA 2 cut(s) 17, 86
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.