Rmu_sc0000805.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000805.1
OG0000560
Physical Location & Seq
Reverse (-)
12332 .. 13405
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000805.1_g000009.1.cds

Sequence Viewer

Length: 687 bp
atgcaaagggaaatggcggccgcaaggcagcaagggtcagaagggcaggaagtcagacgctctactgaagcagataacaaacattgggactttcataaggattcaggagaacctatggaacttgagaccatcggtgaccattttgaaaatgtccttagcttcccaaagctaccccatctgcggtttactgaaggaggggttaagaaagactttgcgactgaagagcaagcgaaagccgatgccaaagctaaggatattgaacaacagaaggaagtacaaaaggcggctatggataagacgccaaatggaaaagtccctaccataagagtactaagaggacaggatccgccgttttcaaatcaagatctgaggatgatgaaaaaatatcataggatgtattcagcattggccatttatggcctaaatgaggaggaaagcgcgatgatgaaaatgttggaaaaggatctgtcttcagagtcatacctcatcactgaggattctagcatcggcttaaaaatcagttatcagtcaatgatggagaattgtaagctggaagccaatactgataacttacctatttctgatgctgacctgacttacctccgcacctaccataaacaacatccagatgctgagatttatggattcacgtccgctgagagcagggatgatgaaaaaatatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.08

Weight (kDa)

5.18

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 440
AciI CCGC 7 cut(s) 17, 21, 181, 284, 347, 604, 654
AclWI GGATC 3 cut(s) 338, 351, 471
AcoI YGGCCR 2 cut(s) 18, 408
AcuI CTGAAG 4 cut(s) 87, 210, 240, 456
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 2 cut(s) 276, 330
AfiI CCNNNNNNNGG 2 cut(s) 180, 427
AgsI TTSAA 3 cut(s) 146, 260, 357
AjiI CACGTC 1 cut(s) 651
AluBI AGCT 4 cut(s) 159, 169, 248, 550
AluI AGCT 4 cut(s) 159, 169, 248, 550
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 3 cut(s) 338, 351, 471
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 3 cut(s) 18, 408, 418
ApeKI GCWGC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 146
BalI TGGCCA 1 cut(s) 410
BamHI GGATCC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 137, 183, 529
BceAI ACGGC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 501
BglII AGATCT 1 cut(s) 364
BisI GCNGC 4 cut(s) 18, 21, 29, 285
BlsI GCNGC 4 cut(s) 19, 22, 30, 286
BmcAI AGTACT 1 cut(s) 330
BmgBI CACGTC 1 cut(s) 651
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 4 cut(s) 229, 513, 574, 619
BpiI GAAGAC 1 cut(s) 462
Bpu10I CCTNAGC 2 cut(s) 155, 249
BpuEI CTTGAG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 427
BseGI GGATG 4 cut(s) 378, 399, 622, 673
BseLI CCNNNNNNNGG 2 cut(s) 180, 427
BseMII CTCAG 4 cut(s) 359, 483, 624, 648
BseRI GAGGAG 1 cut(s) 443
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 3 cut(s) 20, 410, 420
BsiEI CGRYCG 1 cut(s) 21
BslFI GGGAC 2 cut(s) 101, 299
BslI CCNNNNNNNGG 2 cut(s) 180, 427
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 101, 299
BsnI GGCC 3 cut(s) 20, 410, 420
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 343, 364, 463
BspACI CCGC 7 cut(s) 17, 21, 181, 284, 347, 604, 654
BspANI GGCC 3 cut(s) 20, 410, 420
BspCNI CTCAG 4 cut(s) 360, 484, 625, 649
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 3 cut(s) 338, 351, 471
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 119
BssMI GATC 3 cut(s) 343, 364, 463
BssNI GRCGYC 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 7 cut(s) 155, 249, 332, 368, 492, 633, 657
BstEII GGTNACC 1 cut(s) 134
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 4 cut(s) 378, 399, 622, 673
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 3 cut(s) 346, 367, 466
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 343, 364, 463
BstMCI CGRYCG 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 134
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 3 cut(s) 343, 364, 463
BstYI RGATCY 3 cut(s) 343, 364, 463
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 20, 410, 420
BtgZI GCGATG 1 cut(s) 455
BtrI CACGTC 1 cut(s) 651
BtsCI GGATG 4 cut(s) 378, 399, 622, 673
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 632
CciNI GCGGCCGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 440
CseI GACGC 2 cut(s) 66, 307
Csp6I GTAC 2 cut(s) 275, 329
CviQI GTAC 2 cut(s) 275, 329
DdeI CTNAG 7 cut(s) 155, 249, 332, 368, 492, 633, 657
DpnI GATC 3 cut(s) 345, 366, 465
DpnII GATC 3 cut(s) 343, 364, 463
EaeI YGGCCR 2 cut(s) 18, 408
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 336
EclXI CGGCCG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 119
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 4 cut(s) 87, 210, 240, 456
Eco91I GGTNACC 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 134
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 2 cut(s) 101, 299
Fnu4HI GCNGC 4 cut(s) 18, 21, 29, 285
FokI GGATG 4 cut(s) 385, 406, 609, 680
Fsp4HI GCNGC 4 cut(s) 18, 21, 29, 285
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 439
GluI GCNGC 4 cut(s) 18, 21, 29, 285
HaeIII GGCC 3 cut(s) 20, 410, 420
HgaI GACGC 2 cut(s) 66, 307
HhaI GCGC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 299
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 4 cut(s) 101, 476, 497, 645
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 5 cut(s) 40, 56, 369, 475, 583
Hpy188III TCNNGA 3 cut(s) 105, 362, 626
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 3 cut(s) 35, 185, 262
HpyCH4IV ACGT 1 cut(s) 650
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 7 cut(s) 155, 249, 332, 368, 492, 633, 657
HpySE526I ACGT 1 cut(s) 650
Hsp92I GRCGYC 1 cut(s) 299
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 3 cut(s) 343, 364, 463
LguI GCTCTTC 1 cut(s) 216
LpnPI CCDG 7 cut(s) 32, 90, 326, 536, 605, 639, 649
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 4 cut(s) 229, 513, 574, 619
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 650
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 345, 366, 465
MboI GATC 3 cut(s) 343, 364, 463
MboII GAAGA 2 cut(s) 233, 462
MflI RGATCY 3 cut(s) 343, 364, 463
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 1 cut(s) 541
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 8 cut(s) 188, 329, 363, 421, 424, 487, 494, 611
Mox20I TGGCCA 1 cut(s) 410
MscI TGGCCA 1 cut(s) 410
MseI TTAA 2 cut(s) 201, 512
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 656
MvnI CGCG 1 cut(s) 440
NdeII GATC 3 cut(s) 343, 364, 463
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 134
NotI GCGGCCGC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 101, 497, 645
PkrI GCNGC 4 cut(s) 19, 22, 30, 286
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PspEI GGTNACC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 3 cut(s) 343, 364, 463
RsaI GTAC 2 cut(s) 276, 330
RsaNI GTAC 2 cut(s) 275, 329
RseI CAYNNNNRTG 1 cut(s) 627
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 201, 512
SatI GCNGC 4 cut(s) 18, 21, 29, 285
Sau3AI GATC 3 cut(s) 343, 364, 463
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 1 cut(s) 485
SfaNI GCATC 4 cut(s) 229, 513, 574, 619
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 541
SsiI CCGC 7 cut(s) 17, 21, 181, 284, 347, 604, 654
SspMI CTAG 1 cut(s) 501
TaiI ACGT 1 cut(s) 653
TasI AATT 1 cut(s) 541
TatI WGTACW 2 cut(s) 274, 328
TauI GCSGC 3 cut(s) 20, 23, 287
TfiI GAWTC 3 cut(s) 101, 497, 645
Tru1I TTAA 2 cut(s) 201, 512
Tru9I TTAA 2 cut(s) 201, 512
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 4 cut(s) 83, 392, 461, 687
TspRI CASTG 1 cut(s) 496
XagI CCTNNNNNAGG 1 cut(s) 425
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.