Rmu_sc0004063.1_g000005

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004063.1
OG0000560
Physical Location & Seq
Forward (+)
12790 .. 14043
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004063.1_g000005.1.cds

Sequence Viewer

Length: 1254 bp
atgcaaattgactcaagcaggaagggggtcttgaaggttcactttcaagaggcccctcacccaaaaccgttggttgtagtggataggaatcgagatccaccctttacggcggagggactcgtaactatgcaaaattatcatcttttgcattcggccattgattggtatggtttgactaaggaggaaagcaagcttttaaatgaggtgcgtagggatcgcaacagatgcgaagaactttgggcacctaatgtgagaagacgcgtgagagccaaatatcaagcttatttggaagatcaggaaataaaggctgattataattctcttcccatttcaaaaggagacctacagtatttgagggaatactttagtatccactcggccgaagaattattcggcctaatgattgaggaacagatatttgcgttcatatttgaggaacgcatggagaagatggatagagaaagaggggaaattcttcacgccctaagttcacccaagtcttcatcaggtacaccggcatcgggtgaggaggaagaagaaatttttgagtccaatggcgatgaagagcctttcgtaaaagtttacaaggacctgaacccgcccttttcagttaagggacttaagagaatgaagaagtatcatcgaaagaattctgctcttgcattgtacggaccaacaaataaggagatggacacattacatatgatcgctgaatgcccaaagtcagcaacccttttgctggacttggattctagccttggtttaaaggttgcttgccaggctgtccaagaaagcatagagcttaaagttggtaatgagaaaattccaatctcagatagagacctgaagtatttgaagaggttccataagatccaatctgcggtcaagatatatgggatgactaatcaggaaagagagctgatgaaacatttcgaccaccatgtccgcgaagaagaaaatcgtcaacaagctcaagaaaaccaagatttggccaagtggttagaagatactgacacaaatgataaacaagaccagtatttagatgacttagatcttgaagttgatggccaaggcgatcagggcctattggaggacgatgatgacttattggatgaggatataggggattatgatgacatagggggttatgatgaacaagttgactacgatgatgttgatcaggttcctgacgttctaacctccaattcgccagttgataccaccaagaacactttgactgagacaagtgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

417

Amino Acids

48.14

Weight (kDa)

4.7

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AasI GACNNNNNNGTC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 2 cut(s) 162, 988
AccII CGCG 2 cut(s) 261, 948
AciI CCGC 4 cut(s) 110, 599, 881, 946
AclWI GGATC 3 cut(s) 89, 222, 865
AcoI YGGCCR 4 cut(s) 153, 378, 990, 1066
AcsI RAATTY 4 cut(s) 471, 540, 649, 822
AcuI CTGAAG 1 cut(s) 866
AfaI GTAC 2 cut(s) 511, 668
AfiI CCNNNNNNNGG 6 cut(s) 162, 521, 739, 880, 988, 1090
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 5 cut(s) 34, 47, 333, 856, 1058
AjnI CCWGG 1 cut(s) 777
AluBI AGCT 5 cut(s) 193, 281, 802, 919, 971
AluI AGCT 5 cut(s) 193, 281, 802, 919, 971
Alw26I GTCTC 3 cut(s) 333, 834, 1235
AlwI GGATC 3 cut(s) 89, 222, 865
AoxI GGCC 7 cut(s) 51, 153, 378, 394, 990, 1066, 1081
ApoI RAATTY 4 cut(s) 471, 540, 649, 822
Asp700I GAANNNNTTC 4 cut(s) 474, 649, 860, 929
AspS9I GGNCC 4 cut(s) 52, 589, 671, 1081
AsuHPI GGTGA 3 cut(s) 50, 483, 536
AvaII GGWCC 2 cut(s) 589, 671
BaeGI GKGCMC 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BalI TGGCCA 2 cut(s) 992, 1068
BanI GGYRCC 1 cut(s) 241
BbsI GAAGAC 2 cut(s) 262, 492
BccI CCATC 3 cut(s) 445, 682, 1058
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 779
BciVI GTATCC 1 cut(s) 380
BclI TGATCA 1 cut(s) 1177
BcoDI GTCTC 3 cut(s) 333, 834, 1235
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 344
BfrI CTTAAG 1 cut(s) 620
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 1 cut(s) 1051
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 2 cut(s) 589, 671
BmgT120I GGNCC 4 cut(s) 52, 589, 671, 1081
BmiI GGNNCC 4 cut(s) 54, 243, 863, 1185
BmrFI CCNGG 1 cut(s) 779
BmsI GCATC 2 cut(s) 215, 527
BpiI GAAGAC 2 cut(s) 262, 492
BpuEI CTTGAG 1 cut(s) 957
BsaBI GATNNNNATC 2 cut(s) 87, 1176
BsaI GGTCTC 2 cut(s) 333, 834
BsaJI CCNNGG 2 cut(s) 757, 1069
Bsc4I CCNNNNNNNGG 6 cut(s) 162, 521, 739, 880, 988, 1090
Bse118I RCCGGY 1 cut(s) 514
Bse1I ACTGG 2 cut(s) 1033, 1211
Bse8I GATNNNNATC 2 cut(s) 87, 1176
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 757, 1069
BseGI GGATG 2 cut(s) 903, 1117
BseJI GATNNNNATC 2 cut(s) 87, 1176
BseLI CCNNNNNNNGG 6 cut(s) 162, 521, 739, 880, 988, 1090
BseMII CTCAG 2 cut(s) 846, 1230
BseNI ACTGG 2 cut(s) 1033, 1211
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 244
BseX3I CGGCCG 1 cut(s) 378
Bsh1236I CGCG 2 cut(s) 261, 948
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 7 cut(s) 53, 155, 380, 396, 992, 1068, 1083
BshNI GGYRCC 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 381
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 2 cut(s) 129, 630
BslI CCNNNNNNNGG 6 cut(s) 162, 521, 739, 880, 988, 1090
BsmAI GTCTC 3 cut(s) 333, 834, 1235
BsmFI GGGAC 2 cut(s) 129, 630
BsmI GAATGC 2 cut(s) 148, 719
BsnI GGCC 7 cut(s) 53, 155, 380, 396, 992, 1068, 1083
Bso31I GGTCTC 2 cut(s) 333, 834
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
BspACI CCGC 4 cut(s) 110, 599, 881, 946
BspANI GGCC 7 cut(s) 53, 155, 380, 396, 992, 1068, 1083
BspCNI CTCAG 2 cut(s) 845, 1231
BspFNI CGCG 2 cut(s) 261, 948
BspLI GGNNCC 4 cut(s) 54, 243, 863, 1185
BspPI GGATC 3 cut(s) 89, 222, 865
BspQI GCTCTTC 1 cut(s) 558
BspT107I GGYRCC 1 cut(s) 241
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 2 cut(s) 333, 834
BsrFI RCCGGY 1 cut(s) 514
BsrI ACTGG 2 cut(s) 1033, 1211
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 2 cut(s) 757, 1069
BssMI GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
BssT1I CCWWGG 2 cut(s) 757, 1069
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 2 cut(s) 69, 348
Bst6I CTCTTC 3 cut(s) 327, 558, 851
BstAFI CTTAAG 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 191, 775
BstDEI CTNAG 5 cut(s) 177, 485, 832, 1048, 1239
BstENI CCTNNNNNAGG 1 cut(s) 1088
BstF5I GGATG 2 cut(s) 903, 1117
BstFNI CGCG 2 cut(s) 261, 948
BstKTI GATC 8 cut(s) 97, 217, 295, 708, 873, 1054, 1078, 1180
BstMAI GTCTC 3 cut(s) 333, 834, 1235
BstMBI GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 3 cut(s) 225, 779, 1080
BstNI CCWGG 1 cut(s) 779
BstSCI CCNGG 1 cut(s) 777
BstSFI CTRYAG 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 2 cut(s) 261, 948
BstV2I GAAGAC 2 cut(s) 262, 492
BstX2I RGATCY 3 cut(s) 94, 870, 1051
BstYI RGATCY 3 cut(s) 94, 870, 1051
BstZI CGGCCG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 7 cut(s) 53, 155, 380, 396, 992, 1068, 1083
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 903, 1117
Cac8I GCNNGC 2 cut(s) 191, 775
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 4 cut(s) 52, 589, 671, 1081
CseI GACGC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 510, 667
CviAII CATG 2 cut(s) 442, 941
CviQI GTAC 2 cut(s) 510, 667
DdeI CTNAG 5 cut(s) 177, 485, 832, 1048, 1239
DpnI GATC 8 cut(s) 96, 216, 294, 707, 872, 1053, 1077, 1179
DpnII GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
DraI TTTAAA 2 cut(s) 198, 765
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 4 cut(s) 153, 378, 990, 1066
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 3 cut(s) 327, 558, 851
EarI CTCTTC 3 cut(s) 327, 558, 851
EciI GGCGGA 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 2 cut(s) 757, 1069
Eco31I GGTCTC 2 cut(s) 333, 834
Eco47I GGWCC 2 cut(s) 589, 671
Eco52I CGGCCG 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 866
EcoNI CCTNNNNNAGG 1 cut(s) 1088
EcoO109I RGGNCCY 3 cut(s) 52, 589, 1081
EcoRI GAATTC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 2 cut(s) 757, 1069
ErhI CCWWGG 2 cut(s) 757, 1069
FaeI CATG 2 cut(s) 445, 944
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 26, 58
FaqI GGGAC 2 cut(s) 129, 630
FatI CATG 2 cut(s) 441, 940
FauI CCCGC 1 cut(s) 606
FauNDI CATATG 1 cut(s) 702
FbaI TGATCA 1 cut(s) 1177
FokI GGATG 2 cut(s) 910, 1124
FspBI CTAG 1 cut(s) 753
HaeIII GGCC 7 cut(s) 53, 155, 380, 396, 992, 1068, 1083
HapII CCGG 1 cut(s) 515
HgaI GACGC 1 cut(s) 267
Hin1II CATG 2 cut(s) 445, 944
HincII GTYRAC 2 cut(s) 965, 1162
HindII GTYRAC 2 cut(s) 965, 1162
HindIII AAGCTT 2 cut(s) 191, 279
HinfI GANTC 5 cut(s) 11, 88, 117, 548, 749
HpaII CCGG 1 cut(s) 515
HphI GGTGA 3 cut(s) 50, 483, 536
Hpy166II GTNNAC 6 cut(s) 40, 491, 512, 583, 965, 1162
Hpy188I TCNGA 1 cut(s) 835
Hpy188III TCNNGA 9 cut(s) 31, 47, 92, 296, 886, 908, 974, 1055, 1187
Hpy8I GTNNAC 6 cut(s) 40, 491, 512, 583, 965, 1162
HpyAV CCTTC 2 cut(s) 16, 28
HpyCH4III ACNGT 2 cut(s) 69, 348
HpyCH4IV ACGT 1 cut(s) 1191
HpyCH4V TGCA 4 cut(s) 4, 130, 148, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 779, 1080
HpyF3I CTNAG 5 cut(s) 177, 485, 832, 1048, 1239
HpySE526I ACGT 1 cut(s) 1191
Hsp92II CATG 2 cut(s) 445, 944
Ksp22I TGATCA 1 cut(s) 1177
Kzo9I GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
LguI GCTCTTC 1 cut(s) 558
LweI GCATC 2 cut(s) 215, 527
MaeI CTAG 1 cut(s) 753
MaeII ACGT 1 cut(s) 1191
MaeIII GTNAC 1 cut(s) 121
MalI GATC 8 cut(s) 96, 216, 294, 707, 872, 1053, 1077, 1179
MboI GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
MflI RGATCY 3 cut(s) 94, 870, 1051
MhlI GDGCHC 1 cut(s) 244
MlsI TGGCCA 2 cut(s) 992, 1068
MluCI AATT 9 cut(s) 6, 133, 316, 386, 471, 540, 649, 822, 1204
MluI ACGCGT 1 cut(s) 259
MluNI TGGCCA 2 cut(s) 992, 1068
MlyI GAGTC 3 cut(s) 5, 111, 557
Mox20I TGGCCA 2 cut(s) 992, 1068
MroXI GAANNNNTTC 4 cut(s) 474, 649, 860, 929
MscI TGGCCA 2 cut(s) 992, 1068
MseI TTAA 5 cut(s) 197, 612, 621, 764, 804
Msp20I TGGCCA 2 cut(s) 992, 1068
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 779
Mva1269I GAATGC 2 cut(s) 148, 719
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 2 cut(s) 261, 948
MwoI GCNNNNNNNGC 3 cut(s) 225, 779, 1080
NdeI CATATG 1 cut(s) 702
NdeII GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
NlaIII CATG 2 cut(s) 445, 944
NlaIV GGNNCC 4 cut(s) 54, 243, 863, 1185
NmeAIII GCCGAG 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 558
PctI GAATGC 2 cut(s) 148, 719
PdmI GAANNNNTTC 4 cut(s) 474, 649, 860, 929
PfeI GAWTC 2 cut(s) 88, 749
PflMI CCANNNNNTGG 2 cut(s) 162, 988
PleI GAGTC 3 cut(s) 5, 111, 556
PpsI GAGTC 3 cut(s) 5, 111, 556
PpuMI RGGWCCY 1 cut(s) 589
PsiI TTATAA 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 777
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 4 cut(s) 54, 243, 863, 1185
PspPI GGNCC 4 cut(s) 52, 589, 671, 1081
PspPPI RGGWCCY 1 cut(s) 589
PsuI RGATCY 3 cut(s) 94, 870, 1051
RsaI GTAC 2 cut(s) 511, 668
RsaNI GTAC 2 cut(s) 510, 667
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 5 cut(s) 197, 612, 621, 764, 804
Sau3AI GATC 8 cut(s) 94, 214, 292, 705, 870, 1051, 1075, 1177
Sau96I GGNCC 4 cut(s) 52, 589, 671, 1081
SchI GAGTC 3 cut(s) 5, 111, 557
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 2 cut(s) 215, 527
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 589, 671
SmlI CTYRAG 3 cut(s) 13, 620, 972
SmoI CTYRAG 3 cut(s) 13, 620, 972
Sse9I AATT 9 cut(s) 6, 133, 316, 386, 471, 540, 649, 822, 1204
SsiI CCGC 4 cut(s) 110, 599, 881, 946
SspMI CTAG 1 cut(s) 753
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 2 cut(s) 757, 1069
TaaI ACNGT 2 cut(s) 69, 348
TaiI ACGT 1 cut(s) 1194
TaqI TCGA 3 cut(s) 91, 643, 933
TasI AATT 9 cut(s) 6, 133, 316, 386, 471, 540, 649, 822, 1204
TfiI GAWTC 2 cut(s) 88, 749
Tru1I TTAA 5 cut(s) 197, 612, 621, 764, 804
Tru9I TTAA 5 cut(s) 197, 612, 621, 764, 804
TspDTI ATGAA 6 cut(s) 415, 492, 576, 644, 938, 1167
TspGWI ACGGA 1 cut(s) 684
Van91I CCANNNNNTGG 2 cut(s) 162, 988
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 2 cut(s) 589, 671
XagI CCTNNNNNAGG 1 cut(s) 1088
XapI RAATTY 4 cut(s) 471, 540, 649, 822
XmnI GAANNNNTTC 4 cut(s) 474, 649, 860, 929
XspI CTAG 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.