Rh4CG264600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000560
Physical Location & Seq
Reverse (-)
51903549 .. 51904688
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG264600.1

Sequence Viewer

Length: 432 bp
ATGTCTGTTACTACTGAATCAAGCCGTGTTCAGAATATTGACATTAAGGAAGAACCCACCAGGGATGGCCGAGTAGTTGCTAATGAAGTTGGACATGGATCAATTCGAAGAAGACTTACTTATGACAGTCCTCCTCCCAGAGACAAAGGCAAGAGAGTGTTATCCCCAGAATCTAACAAGGTCGGCCGTGAAGGGGCCGATAGCATGAATTACATTGGGAATAATAGCAAGAAATATGGAGGAAGCAAAGCAGCATGGGAAAGTTCATCTCCAACAATGTGCACACCAGAGGATAGCTCAGCCTTACCAGTGTCTGAGGAAGATTTACTGTATTTAACGGAGTACCACCGGCGCTATTCGGCTGAGGAGTTATACGACCTTACTGAGGAAGAGGAAGAACTAGCAGATGCATTTGATCGGTACATTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

4.8

Isoelectric Point (pI)

86.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 67, 184
AfaI GTAC 2 cut(s) 344, 422
AfiI CCNNNNNNNGG 2 cut(s) 193, 385
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 280
AlwI GGATC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 314
AoxI GGCC 3 cut(s) 67, 184, 195
ApaLI GTGCAC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 195
AsuII TTCGAA 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 9, 171
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 401, 430
BfoI RGCGCY 1 cut(s) 355
BisI GCNGC 1 cut(s) 252
BlpI GCTNAGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 118
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu10I CCTNAGC 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 298
Bpu14I TTCGAA 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 385
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 193, 385
BseMII CTCAG 4 cut(s) 306, 312, 354, 375
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 123, 380
BseSI GKGCMC 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 69, 186, 197
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 193, 385
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 3 cut(s) 69, 186, 197
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 98, 415
Bsp1720I GCTNAGC 1 cut(s) 298
BspANI GGCC 3 cut(s) 69, 186, 197
BspCNI CTCAG 4 cut(s) 307, 311, 355, 376
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 98, 415
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 128, 330
Bst6I CTCTTC 1 cut(s) 384
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 4 cut(s) 298, 315, 363, 384
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 2 cut(s) 101, 418
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 98, 415
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 118
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 3 cut(s) 69, 186, 197
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 315
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 343, 421
CviAII CATG 3 cut(s) 95, 205, 255
CviJI RGCY 7 cut(s) 24, 69, 186, 197, 297, 302, 362
CviKI_1 RGCY 7 cut(s) 24, 69, 186, 197, 297, 302, 362
CviQI GTAC 2 cut(s) 343, 421
DdeI CTNAG 4 cut(s) 298, 315, 363, 384
DpnI GATC 2 cut(s) 100, 417
DpnII GATC 2 cut(s) 98, 415
EaeI YGGCCR 2 cut(s) 67, 184
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EclXI CGGCCG 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 3 cut(s) 98, 208, 258
FaiI YATR 6 cut(s) 96, 123, 206, 237, 256, 373
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FatI CATG 3 cut(s) 94, 204, 254
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 401, 430
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 3 cut(s) 69, 186, 197
HapII CCGG 1 cut(s) 349
HhaI GCGC 1 cut(s) 354
Hin1II CATG 3 cut(s) 98, 208, 258
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 2 cut(s) 17, 170
HpaII CCGG 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 2 cut(s) 33, 316
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 128, 330
HpyCH4V TGCA 2 cut(s) 282, 410
HpyF3I CTNAG 4 cut(s) 298, 315, 363, 384
Hsp92II CATG 3 cut(s) 98, 208, 258
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 98, 415
LpnPI CCDG 7 cut(s) 46, 73, 151, 180, 300, 321, 362
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 401, 430
MaeIII GTNAC 1 cut(s) 7
MalI GATC 2 cut(s) 100, 417
MboI GATC 2 cut(s) 98, 415
MboII GAAGA 6 cut(s) 62, 120, 123, 332, 401, 407
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 102, 208
MmeI TCCRAC 2 cut(s) 70, 296
MnlI CCTC 8 cut(s) 141, 144, 233, 283, 310, 358, 379, 385
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 2 cut(s) 45, 335
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
NdeII GATC 2 cut(s) 98, 415
NlaIII CATG 3 cut(s) 98, 208, 258
NlaIV GGNNCC 1 cut(s) 196
NmeAIII GCCGAG 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 412
NspV TTCGAA 1 cut(s) 106
PfeI GAWTC 2 cut(s) 17, 170
PkrI GCNGC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 314
RsaI GTAC 2 cut(s) 344, 422
RsaNI GTAC 2 cut(s) 343, 421
SaqAI TTAA 2 cut(s) 45, 335
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 98, 415
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 284
SetI ASST 3 cut(s) 183, 299, 381
SfaNI GCATC 1 cut(s) 397
SfuI TTCGAA 1 cut(s) 106
SgrAI CRCCGGYG 1 cut(s) 348
Sse9I AATT 2 cut(s) 102, 208
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 401, 430
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 128, 330
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 102, 208
TfiI GAWTC 2 cut(s) 17, 170
Tru1I TTAA 2 cut(s) 45, 335
Tru9I TTAA 2 cut(s) 45, 335
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 99, 221, 255
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 315
VneI GTGCAC 1 cut(s) 280
XagI CCTNNNNNAGG 1 cut(s) 383
XspI CTAG 2 cut(s) 401, 430
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.