Rmu_sc0022033.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022033.1
OG0000560
Physical Location & Seq
Reverse (-)
1 .. 530
530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022033.1_g000001.1.cds

Sequence Viewer

Length: 477 bp
atgtatgggatgactacccaagaaagagagctgatgcagcgcttcgaccaccatgtccgagaagaagagaatcgtcaacaagctcaagcaaaccaagacctggccaaatggttagaggacactgacacaaatgatacacaagaccagcatttagatgacctggatctggaagtcgatggtcatggtgatgagggcctatttgaggacaatgaggacctattggatgaagatatgggggattatgatgacataggggattatgatgaacagattgactacgatgatgccgatcaggttcctgacgtcccaacctccaatccacaggttgataccaccatgaacactttgaccgagacgagtgtacaaacttcagccagggaggccgaaggagctactatcccaacatctcaagacatcggtgactttagggtgaatatgattagcgttcagtcagcaactaagattgatttcgacctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.13

Weight (kDa)

4.05

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 306
AccB7I CCANNNNNTGG 1 cut(s) 100
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 363
AfeI AGCGCT 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 100, 166, 202
AjnI CCWGG 3 cut(s) 99, 159, 374
AluBI AGCT 3 cut(s) 31, 83, 392
AluI AGCT 3 cut(s) 31, 83, 392
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 171
Aor51HI AGCGCT 1 cut(s) 41
AoxI GGCC 3 cut(s) 102, 193, 381
ApeKI GCWGC 1 cut(s) 37
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 193, 214
AsuHPI GGTGA 3 cut(s) 197, 431, 442
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 104
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 3 cut(s) 101, 161, 376
BcoDI GTCTC 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 3 cut(s) 101, 161, 376
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 193, 214
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 3 cut(s) 101, 161, 376
BmsI GCATC 2 cut(s) 24, 274
BpuEI CTTGAG 2 cut(s) 69, 393
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 166, 202
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 3 cut(s) 101, 161, 376
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 2 cut(s) 15, 229
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 100, 166, 202
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 3 cut(s) 104, 195, 383
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 100, 166, 202
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 3 cut(s) 104, 195, 383
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 2 cut(s) 163, 289
BspANI GGCC 3 cut(s) 104, 195, 383
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 163, 289
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 3 cut(s) 101, 161, 376
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 15, 229
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 2 cut(s) 166, 292
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 163, 289
BstMWI GCNNNNNNNGC 3 cut(s) 37, 380, 389
BstNI CCWGG 3 cut(s) 101, 161, 376
BstSCI CCNGG 3 cut(s) 99, 159, 374
BstV1I GCAGC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 3 cut(s) 104, 195, 383
BtsCI GGATG 2 cut(s) 15, 229
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 193, 214
Csp6I GTAC 1 cut(s) 362
CviAII CATG 3 cut(s) 53, 182, 337
CviJI RGCY 7 cut(s) 31, 83, 104, 195, 374, 383, 392
CviKI_1 RGCY 7 cut(s) 31, 83, 104, 195, 374, 383, 392
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 459
DpnI GATC 2 cut(s) 165, 291
DpnII GATC 2 cut(s) 163, 289
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 214
Eco47III AGCGCT 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 200
EcoO109I RGGNCCY 2 cut(s) 193, 214
EcoRII CCWGG 3 cut(s) 99, 159, 374
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 3 cut(s) 56, 185, 340
FaiI YATR 9 cut(s) 6, 54, 183, 233, 243, 251, 261, 338, 437
FaqI GGGAC 1 cut(s) 290
FatI CATG 3 cut(s) 52, 181, 336
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 2 cut(s) 22, 236
Fsp4HI GCNGC 1 cut(s) 38
GlaI GCGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 3 cut(s) 104, 195, 383
HhaI GCGC 1 cut(s) 42
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 3 cut(s) 56, 185, 340
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HinfI GANTC 1 cut(s) 70
HphI GGTGA 3 cut(s) 197, 431, 442
Hpy166II GTNNAC 2 cut(s) 77, 362
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 167, 299, 410
Hpy8I GTNNAC 2 cut(s) 77, 362
HpyAV CCTTC 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 380, 389
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 3 cut(s) 56, 185, 340
HspAI GCGC 1 cut(s) 40
Kzo9I GATC 2 cut(s) 163, 289
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 24, 274
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 419
MalI GATC 2 cut(s) 165, 291
MboI GATC 2 cut(s) 163, 289
MboII GAAGA 3 cut(s) 74, 77, 239
MflI RGATCY 1 cut(s) 163
MlsI TGGCCA 1 cut(s) 104
MluNI TGGCCA 1 cut(s) 104
MnlI CCTC 6 cut(s) 109, 184, 196, 205, 322, 373
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
MslI CAYNNNNRTG 2 cut(s) 153, 186
Msp20I TGGCCA 1 cut(s) 104
MspR9I CCNGG 3 cut(s) 101, 161, 376
MvaI CCWGG 3 cut(s) 101, 161, 376
MwoI GCNNNNNNNGC 3 cut(s) 37, 380, 389
NdeII GATC 2 cut(s) 163, 289
NlaIII CATG 3 cut(s) 56, 185, 340
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 99, 159, 374
PspGI CCWGG 3 cut(s) 99, 159, 374
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 2 cut(s) 193, 214
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 2 cut(s) 153, 186
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 163, 289
Sau96I GGNCC 2 cut(s) 193, 214
ScrFI CCNGG 3 cut(s) 101, 161, 376
SfaNI GCATC 2 cut(s) 24, 274
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 153, 186
SmlI CTYRAG 2 cut(s) 84, 408
SmoI CTYRAG 2 cut(s) 84, 408
StyD4I CCNGG 3 cut(s) 99, 159, 374
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 45, 174, 471
TaqII GACCGA 1 cut(s) 365
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 3 cut(s) 240, 279, 353
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 214
XagI CCTNNNNNAGG 1 cut(s) 200
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.