Rroxscaffold_5G00338270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000560
Physical Location & Seq
Reverse (-)
6448732 .. 6449508
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338270.1

Sequence Viewer

Length: 393 bp
ATGGAACTTGAGACCATCGATGACCAGTTTGAGAATGTTCTTAGCTTCCCAAAGCTACCTCATCCGCGTTTATCGAAGGAGGGAAAGACTTCGCAACCGAAGAGCAAGCGAAGGCCGATGCCAAAGCTAAGGATATTGAACGAGTTGAAGGAAATACATAAGGCGCCTAAGGATAAAACGCCAAATGGGAAAGTCCCCACCATAAGAGTACTAAGAGGACAAGATCCTCCATTCTCAAATCAAGATCCGGGGATGATGAAGAAATATCATAGAATGTATTCGGCCTTGGCCACTTATGGCCTAACCGAGGAAGAAAGCGCGATGATGAAAATGTTGGAAAAGGATATGTCTTCGAGTCATACCTCATCACCGAGGATTCTAGCATCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.84

Weight (kDa)

9.69

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 163
AccII CGCG 2 cut(s) 67, 320
AciI CCGC 1 cut(s) 65
AclWI GGATC 2 cut(s) 218, 239
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 139, 148
AluBI AGCT 3 cut(s) 45, 55, 127
AluI AGCT 3 cut(s) 45, 55, 127
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 218, 239
AoxI GGCC 4 cut(s) 113, 282, 288, 298
Asp700I GAANNNNTTC 2 cut(s) 88, 277
AspLEI GCGC 2 cut(s) 166, 320
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 360
AxyI CCTNAGG 1 cut(s) 168
BalI TGGCCA 1 cut(s) 290
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 342
BccI CCATC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 167
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 248, 285, 306, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 4 cut(s) 248, 285, 306, 371
BseGI GGATG 2 cut(s) 61, 258
BseLI CCNNNNNNNGG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 67, 320
BshFI GGCC 4 cut(s) 115, 284, 290, 300
BshNI GGYRCC 1 cut(s) 163
BshVI ATCGAT 1 cut(s) 18
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 4 cut(s) 115, 284, 290, 300
Bso31I GGTCTC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 223, 244
BspACI CCGC 1 cut(s) 65
BspANI GGCC 4 cut(s) 115, 284, 290, 300
BspDI ATCGAT 1 cut(s) 18
BspFNI CGCG 2 cut(s) 67, 320
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 218, 239
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 248, 285, 306, 371
BssMI GATC 2 cut(s) 223, 244
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 4 cut(s) 41, 128, 168, 212
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 61, 258
BstFNI CGCG 2 cut(s) 67, 320
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 166, 320
BstKTI GATC 2 cut(s) 226, 247
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 2 cut(s) 223, 244
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 2 cut(s) 67, 320
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 223, 244
BstYI RGATCY 2 cut(s) 223, 244
Bsu15I ATCGAT 1 cut(s) 18
Bsu36I CCTNAGG 1 cut(s) 168
BsuRI GGCC 4 cut(s) 115, 284, 290, 300
BsuTUI ATCGAT 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 61, 258
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 2 cut(s) 166, 320
ClaI ATCGAT 1 cut(s) 18
Csp6I GTAC 1 cut(s) 209
CviJI RGCY 8 cut(s) 45, 55, 115, 127, 284, 290, 300, 389
CviKI_1 RGCY 8 cut(s) 45, 55, 115, 127, 284, 290, 300, 389
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 4 cut(s) 41, 128, 168, 212
DinI GGCGCC 1 cut(s) 165
DpnI GATC 2 cut(s) 225, 246
DpnII GATC 2 cut(s) 223, 244
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 5
Eco81I CCTNAGG 1 cut(s) 168
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 165
EheI GGCGCC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 6 cut(s) 159, 203, 270, 297, 347, 360
FaqI GGGAC 1 cut(s) 179
FokI GGATG 2 cut(s) 48, 265
FspBI CTAG 1 cut(s) 380
GlaI GCGC 2 cut(s) 165, 319
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 4 cut(s) 115, 284, 290, 300
HapII CCGG 1 cut(s) 248
HhaI GCGC 2 cut(s) 166, 320
Hin1I GRCGYC 1 cut(s) 164
Hin6I GCGC 2 cut(s) 164, 318
HinP1I GCGC 2 cut(s) 164, 318
HinfI GANTC 2 cut(s) 355, 376
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 360
Hpy188III TCNNGA 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 70, 105, 142
HpyF3I CTNAG 4 cut(s) 41, 128, 168, 212
Hsp92I GRCGYC 1 cut(s) 164
HspAI GCGC 2 cut(s) 164, 318
KasI GGCGCC 1 cut(s) 163
Kzo9I GATC 2 cut(s) 223, 244
LguI GCTCTTC 1 cut(s) 95
LpnPI CCDG 2 cut(s) 38, 261
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 380
MalI GATC 2 cut(s) 225, 246
MboI GATC 2 cut(s) 223, 244
MboII GAAGA 4 cut(s) 112, 271, 323, 342
MflI RGATCY 2 cut(s) 223, 244
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
Mly113I GGCGCC 1 cut(s) 164
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 7 cut(s) 69, 73, 209, 237, 301, 366, 373
Mox20I TGGCCA 1 cut(s) 290
MroXI GAANNNNTTC 2 cut(s) 88, 277
MscI TGGCCA 1 cut(s) 290
MseI TTAA 1 cut(s) 391
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 2 cut(s) 67, 320
NarI GGCGCC 1 cut(s) 164
NciI CCSGG 1 cut(s) 249
NdeII GATC 2 cut(s) 223, 244
NlaIV GGNNCC 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 88, 277
PfeI GAWTC 1 cut(s) 376
PleI GAGTC 1 cut(s) 363
PluTI GGCGCC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 2 cut(s) 223, 244
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 391
Sau3AI GATC 2 cut(s) 223, 244
ScaI AGTACT 1 cut(s) 210
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 249
SetI ASST 5 cut(s) 47, 57, 61, 129, 365
SfaNI GCATC 1 cut(s) 108
SfoI GGCGCC 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SsiI CCGC 1 cut(s) 65
SspDI GGCGCC 1 cut(s) 163
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 3 cut(s) 18, 74, 353
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TspDTI ATGAA 2 cut(s) 272, 341
XagI CCTNNNNNAGG 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 88, 277
XspI CTAG 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.