Rh2BG180300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
16027565 .. 16027951
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG180300.1

Sequence Viewer

Length: 387 bp
ATGGTCACAGACTTCAATGAGATTCAGCAAGAAACCACCTTTCATGTGGCCGAGGTTGAAAACTCACAAGCCCAAGTTCATGGTGAGAAATTTGAAATCGAAGATGAACAAGCAATGATTGATGTTGAAGATCAAGAGGGTGACAAGTGCAGTGAGGATTTTGCTGAGGGTCAGGCTTTCGAAGGAGATGCAGAGTTTAACAATCATGGGCTAGGTGAGGTAAGAAAAGTTGAGATGAATATGGTTTATATCTTGCCTATTGATTTCCTTGCACGGCCGGATCAGCTGAATACAATGGAAGGAGATGTTGAAGATAGAATTTTCCTAGAGTTTCAATTCAGGAACAGCCTCAGGCTCACTTCCAGAAGCCAACGCCAGAAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.94

Weight (kDa)

4.25

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 288
AcoI YGGCCR 2 cut(s) 48, 275
AcsI RAATTY 2 cut(s) 89, 318
AgsI TTSAA 6 cut(s) 16, 59, 95, 128, 311, 335
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
AlwI GGATC 1 cut(s) 288
AoxI GGCC 2 cut(s) 48, 275
ApoI RAATTY 2 cut(s) 89, 318
AsuHPI GGTGA 3 cut(s) 95, 152, 227
AsuII TTCGAA 1 cut(s) 180
AxyI CCTNAGG 1 cut(s) 350
BbvCI CCTCAGC 1 cut(s) 165
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BfaI CTAG 2 cut(s) 212, 326
BmsI GCATC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 51
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 156, 364
BseX3I CGGCCG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 2 cut(s) 50, 277
BsiEI CGRYCG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 278
BsnI GGCC 2 cut(s) 50, 277
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 130, 280
BspANI GGCC 2 cut(s) 50, 277
BspCNI CTCAG 2 cut(s) 157, 363
BspPI GGATC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 130, 280
BstBI TTCGAA 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 165, 350
BstKTI GATC 2 cut(s) 133, 283
BstMBI GATC 2 cut(s) 130, 280
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstXI CCANNNNNNTGG 1 cut(s) 80
BstZI CGGCCG 1 cut(s) 275
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 2 cut(s) 50, 277
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
CviAII CATG 3 cut(s) 44, 80, 206
CviJI RGCY 9 cut(s) 50, 71, 176, 211, 277, 286, 348, 355, 369
CviKI_1 RGCY 9 cut(s) 50, 71, 176, 211, 277, 286, 348, 355, 369
DdeI CTNAG 2 cut(s) 165, 350
DpnI GATC 2 cut(s) 132, 282
DpnII GATC 2 cut(s) 130, 280
EaeI YGGCCR 2 cut(s) 48, 275
EagI CGGCCG 1 cut(s) 275
EclXI CGGCCG 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 350
FaeI CATG 3 cut(s) 47, 83, 209
FaiI YATR 5 cut(s) 45, 81, 207, 242, 249
FatI CATG 3 cut(s) 43, 79, 205
FspBI CTAG 2 cut(s) 212, 326
HaeIII GGCC 2 cut(s) 50, 277
HapII CCGG 1 cut(s) 278
Hin1II CATG 3 cut(s) 47, 83, 209
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 278
HphI GGTGA 3 cut(s) 95, 152, 227
Hpy188III TCNNGA 3 cut(s) 134, 340, 363
HpyAV CCTTC 2 cut(s) 176, 293
HpyCH4V TGCA 3 cut(s) 150, 191, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 165, 350
Hsp92II CATG 3 cut(s) 47, 83, 209
Kzo9I GATC 2 cut(s) 130, 280
LpnPI CCDG 5 cut(s) 158, 291, 325, 337, 376
LweI GCATC 1 cut(s) 178
MaeI CTAG 2 cut(s) 212, 326
MaeIII GTNAC 2 cut(s) 4, 140
MalI GATC 2 cut(s) 132, 282
MboI GATC 2 cut(s) 130, 280
MboII GAAGA 3 cut(s) 113, 140, 323
MluCI AATT 3 cut(s) 89, 318, 335
MnlI CCTC 6 cut(s) 46, 130, 148, 160, 211, 359
MseI TTAA 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 2 cut(s) 130, 280
NlaIII CATG 3 cut(s) 47, 83, 209
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 4, 140
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 2 cut(s) 130, 280
SetI ASST 5 cut(s) 41, 57, 217, 222, 288
SfaNI GCATC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 180
Sse9I AATT 3 cut(s) 89, 318, 335
SspMI CTAG 2 cut(s) 212, 326
TaqI TCGA 2 cut(s) 99, 180
TasI AATT 3 cut(s) 89, 318, 335
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 2 cut(s) 4, 140
Tsp45I GTSAC 2 cut(s) 4, 140
TspDTI ATGAA 4 cut(s) 32, 68, 120, 251
TspRI CASTG 1 cut(s) 157
XapI RAATTY 2 cut(s) 89, 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XspI CTAG 2 cut(s) 212, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.