Rmu_sc0004574.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004574.1
OG0000560
Physical Location & Seq
Reverse (-)
48826 .. 49649
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004574.1_g000014.1.cds

Sequence Viewer

Length: 780 bp
atgtattcagcattggccacttgtggcctaactgaggaggaaagcgcgatgatgaaaatgttggaaaatgatctgtcttcagagtcatacctcatcactgaggattctagcatcggcttaaaaatcagttatcaggcaatgatggagaattgtaagctggaagccaatactgataacttacccatttctgatgctgacctgacttacctccgcacctaccataaacaacatccagatgctgagatttatggattcacgtccgctgagagcaaattactagataatttgtccaaatacctgcgggctcgtgcaattgagtggcaagcagagacagagaaggcatccaccaagctgacaactggggccattgaagaattgaagaaagagcaagccagtctcaatcaacagttgaaggatgaagaaatggtagaaggtactgccacgaacaatggtaagcaagacgattatggagacgagggtgatgaggaagtcgattatggggaaaaagaggaacaaggtgactatgataatgaagctggaatcgactacgacataggagatgacacagcttttaacatggaaaccttatccccattttacaagggcgaggctgcctttggaaaaggaaaagctcaaccaggtcagtcaaatgaactgatcgacgactttgttgcttatcaacaacctcgatttgagattgatgaagccgttgcccagttaaaggatgaagaaggccgttggtactcacaaaaccaacagccaaaatggctcagcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.2

Weight (kDa)

4.19

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccII CGCG 1 cut(s) 47
AciI CCGC 3 cut(s) 211, 261, 301
AcoI YGGCCR 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 436, 743
AfiI CCNNNNNNNGG 2 cut(s) 34, 721
AgsI TTSAA 3 cut(s) 371, 379, 412
AjiI CACGTC 1 cut(s) 258
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 5 cut(s) 157, 352, 536, 569, 632
AluI AGCT 5 cut(s) 157, 352, 536, 569, 632
Alw26I GTCTC 3 cut(s) 323, 401, 465
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 4 cut(s) 15, 25, 363, 733
ApeKI GCWGC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 491, 530
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 1 cut(s) 307
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 598
BccI CCATC 1 cut(s) 136
BceAI ACGGC 2 cut(s) 692, 720
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 1 cut(s) 639
BcoDI GTCTC 3 cut(s) 323, 401, 465
BfaI CTAG 2 cut(s) 108, 278
BfuAI ACCTGC 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 1 cut(s) 612
BlpI GCTNAGC 1 cut(s) 770
BlsI GCNGC 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 639
BmgBI CACGTC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 2 cut(s) 369, 709
BmsI GCATC 4 cut(s) 120, 181, 226, 350
BmuI ACTGGG 2 cut(s) 369, 709
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 770
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 721
Bse1I ACTGG 3 cut(s) 364, 393, 715
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 639
BseGI GGATG 4 cut(s) 229, 341, 421, 730
BseLI CCNNNNNNNGG 2 cut(s) 34, 721
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 4 cut(s) 24, 90, 231, 255
BseNI ACTGG 3 cut(s) 364, 393, 715
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 4 cut(s) 17, 27, 365, 735
BslI CCNNNNNNNGG 2 cut(s) 34, 721
BsmAI GTCTC 3 cut(s) 323, 401, 465
BsmBI CGTCTC 1 cut(s) 465
BsnI GGCC 4 cut(s) 17, 27, 365, 735
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 2 cut(s) 70, 657
Bsp1720I GCTNAGC 1 cut(s) 770
BspACI CCGC 3 cut(s) 211, 261, 301
BspANI GGCC 4 cut(s) 17, 27, 365, 735
BspCNI CTCAG 4 cut(s) 25, 91, 232, 256
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 3 cut(s) 364, 393, 715
BssMI GATC 2 cut(s) 70, 657
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 303, 324, 390
BstDEI CTNAG 5 cut(s) 33, 99, 240, 264, 770
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 4 cut(s) 229, 341, 421, 730
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 73, 660
BstMAI GTCTC 3 cut(s) 323, 401, 465
BstMBI GATC 2 cut(s) 70, 657
BstMWI GCNNNNNNNGC 1 cut(s) 766
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 598
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 4 cut(s) 17, 27, 365, 735
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 258
BtsCI GGATG 4 cut(s) 229, 341, 421, 730
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 3 cut(s) 303, 324, 390
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 363
CsiI ACCWGGT 1 cut(s) 637
Csp6I GTAC 2 cut(s) 435, 742
CviAII CATG 1 cut(s) 577
CviQI GTAC 2 cut(s) 435, 742
DdeI CTNAG 5 cut(s) 33, 99, 240, 264, 770
DpnI GATC 2 cut(s) 72, 659
DpnII GATC 2 cut(s) 70, 657
EaeI YGGCCR 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 465
FaeI CATG 1 cut(s) 580
FaiI YATR 8 cut(s) 88, 222, 249, 468, 498, 525, 554, 578
FatI CATG 1 cut(s) 576
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 612
FokI GGATG 4 cut(s) 216, 328, 428, 737
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 612
FspBI CTAG 2 cut(s) 108, 278
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 612
HaeIII GGCC 4 cut(s) 17, 27, 365, 735
HhaI GCGC 1 cut(s) 47
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 4 cut(s) 83, 104, 252, 540
HphI GGTGA 2 cut(s) 491, 530
Hpy188I TCNGA 2 cut(s) 82, 190
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 665
HpyAV CCTTC 4 cut(s) 331, 406, 425, 725
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 766
HpyF3I CTNAG 5 cut(s) 33, 99, 240, 264, 770
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 70, 657
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 4 cut(s) 120, 181, 226, 350
MabI ACCWGGT 1 cut(s) 637
MaeI CTAG 2 cut(s) 108, 278
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 518
MalI GATC 2 cut(s) 72, 659
MboI GATC 2 cut(s) 70, 657
MboII GAAGA 5 cut(s) 69, 383, 391, 431, 740
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 5 cut(s) 148, 272, 283, 312, 374
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 3 cut(s) 119, 573, 719
MslI CAYNNNNRTG 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 766
NdeII GATC 2 cut(s) 70, 657
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 518
PfeI GAWTC 3 cut(s) 104, 252, 540
PkrI GCNGC 1 cut(s) 613
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 363
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 436, 743
RsaNI GTAC 2 cut(s) 435, 742
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 3 cut(s) 119, 573, 719
SatI GCNGC 1 cut(s) 612
Sau3AI GATC 2 cut(s) 70, 657
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 307
SexAI ACCWGGT 1 cut(s) 637
SfaNI GCATC 4 cut(s) 120, 181, 226, 350
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 5 cut(s) 148, 272, 283, 312, 374
SsiI CCGC 3 cut(s) 211, 261, 301
SspMI CTAG 2 cut(s) 108, 278
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 260
TaqI TCGA 4 cut(s) 492, 543, 660, 688
TasI AATT 5 cut(s) 148, 272, 283, 312, 374
TfiI GAWTC 3 cut(s) 104, 252, 540
Tru1I TTAA 3 cut(s) 119, 573, 719
Tru9I TTAA 3 cut(s) 119, 573, 719
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 6 cut(s) 68, 432, 546, 666, 717, 741
TspRI CASTG 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 32
XspI CTAG 2 cut(s) 108, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.