RchiOBHm_Chr6g0263201

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000560
Physical Location & Seq
Forward (+)
17982482 .. 17986056
3575 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23606

Sequence Viewer

Length: 3510 bp
ATGTACAAAGCATTGAATGAAGTTTTTAAATTGCAGACGAATGAACTCGCTACTCGAGGAGAAATCAACAATAGAACGTTGGTAGATCAGTTAGCTACTGTTTTGGGAGAGAATACTAACCGATCAATCGGAGGATTGCAAACATCTCTTGAGCAACTGAACCAAACAATGGCGGCTATGGTGAATGGTCAGAACACTTTGCAAACCTTGCTGATACAAAATCAACAAGGCCAACTCAACCAAGCACTTCAACCTCCATGGCAGCAAGCTCATGCTTATGTTCCACAGCCACTAGCTCAGTTTCCTATTGGTGGACAGCCGTTTCAAGCTCAACCCCAATTTGGAATGGCCAATAATTACGTGCAACAGCCGATAAATAACAACAACGGTTTAGGAGGACAAAATCCACCTAGGAATGGGTTAACAGTCGAAGAAATAAGGAGAATCTGTGAAGAAACTGTAGGGCCGGCTCCTAGAAGAACGGCCAGGCCAAGATACACCAAACCATATCCGGAAAGGGTTGAAAATAGAGACTATCCGAGGGGATTCAAATTTCCCGACTTTCCTTTATTCAGTGGAGATGATTACCAATCAACTATAGCACATATTTCCCGGTTCACCGCGCGATGTGCTGAGCATTCTAGAGATGACGATTTGAAGTTGAAGTGGTTTGAGAACTCACTGACCGGCCCTGCTCATGCTTGGTATGTCAACTTGGCTCCTAATTCTATTCAAAACTGGGTCGACATGGAAAGAGCTTTCCATGAGCAATTCTACAGAGCCGAACCAGAAGTCACAATCGCTGATTTAGCAAAAATGTATCAAGCAGCACATGAGTCGGCCCAAGATTTCTTGGATAGATTTAAGGCCGCAAGAAACAAGTGCAGAGTTAACTTGGGGGAGCTAGAATTTGTCCGAATAGCTCAACAAGGTCTAAATTACGAGTTGCGCAAGAAATATGAGGGAGTTGATATTAGAGACATTTTTGAATTAACCACTAGCGTGGCTAGATATGAGGCAATCATTAGAGAAGAGACTCAAGCCAGATCAGCCTCAAAGGGAACTTATTATAAGAACCCTACTGTTCATGCTGTGGAGGCCAATTTCCAAGGTTTGAAGGTCGAGGAAGAAGATTCGGCCGAGATCAATGCTGCTGAACTATTTGTAAACAAGCCAGTGGTTTGTAAAGCCCTTGCAAAGCCAACAAACCCAATCAAGGATAAACCTCAGCCGATAACCTACCATACCAAAGATGGCACACCTTTAAGATTGACACCTACCCGCACTTACACTTTTGATATCACAAAGGCTGACATAATTTTTGATCAACTTCTTGCTGAGAAAGTAATTAAATTGCCAAACGGCCATGTTATACCTAAGGCCGATGAAACTAGAAATAAGTCTTATTGTAAATTTCACAATTCTTGGAAGCATTCTACTAACAATTGTGTGGTTTACCGTGATGCTTTGCAGGATCTCATCGAAAAAGGAAAGCTGAAGTTTCCGGAGACGAGCAAACCAGCTCAGCTTGTCGATACCGACCCTTTTCCAGTCAACATGGTGTACGTCAACTTCCCAAGAGGCCACAGGAGGAATTGGCCAAATATGAACTTTTCTGATCCTAGGGCCCGAAGGAGGTATATGTTTCGTGACCAGAGGAGGGAGCCAGTTTATGACAGTCAGGATGAGGATGCATACGATATGACAATGCCACCGGCTTTGAAGACCTCATCGTCATCTACTTCAAAAGTACCGCCGGCCAGTGCTGTGATTCTGTGCAGCCGTTGCAACTGTGAGGTAACCCTCAATAATCTTCTGCAAATCAAGCACCAAGAGTTAGCTACTGATCAACAGGTAAAGCCTGGGTTAAAAGCCTCAACTAATTGTGAAGAAAGTAAGAAGAAAGACTCAGGAGGGAAACATGCTGGCAATGAATTGGGGACTCCCACGGCCAATTTGGCCGAGGATGAAGTACTTAAGCTCTTTGGCCCTCACAGTCCCAAGGGATATTATCAGGCACAACAAACTTCCCAAAGTGTGTTTAAGAGAATAAAGGAATCTGAAAACGCCGAAAGTGGACGACTTTCGGTGAGGAGAAGGTTGACTTTTGAAGATGATGATCTTGAGGGAAATTTTGTTGATGGTTTCAATGGCCGACGACGATCAGGTTTTGACCAAGATGATCGATTTTATGACCAAGATTACTTTGCTAGAAATAGAGGCCGAAGACCTTATAGGACATATCGGCCACCAGTTACTCATGATAATAGGTGGTATGGCCGAGCGGCCAGAGATCAGCCATTTTCCCCTTTGACAAAAACTCAAAAGAGGCGTATGCAAAGGGAAGTGGCTGCTGCAAGGCAGCAAGGGTCAGAAGGGCAGGAAGTCAGACGCTCTACTGAAGCAGATAACAAAGAAGCCCTTATAATAAGAGAGGACTTTCATAAGGATTCAGGAGAACCTATGGAACTTGAGACCATCGGTGACCATATTGAAAATGTCCTTAGCTTCCCAAAGCTACCCCATCTGCGATTTACTGAAGGAGGGGTTAAGGTCTTCAAACATCTCAACCCTCCATTTAAGTTGGCTGAATTAGAAACAATGAGAAAGTTTCACCAGAAACATTCAGCCCTTGCAATTTATGGGCTTCCAAGGAGTCAAGACTATATTCTCAATACAATAGTAGCAAATTCTGATGCCGATCATGCTCTGATTCGGCAGGGTTTCCATAGCCGATTCATTACACCTGGTTTAAAAGCTTTGTATCAAGCACATCGCAAAGGAATCCAAAAGAAGGATATAGTCGCTCAAATTCCAGTTTCAGAAGCCGACCTTCATTTCCTTAGATGTTTTCATAGAAGCCACTCGGCTGAGGAAACTTATGGCATAACGCCAGAAGAGGTCCAGCTCGCAAGGGAACTTGATAATTATTTAGAAAAGAAAGACTTCGCAATTGAAGAGCAAGCGAAAGCCGATACCAAAGCTAAGGATATTGAACAACAGAAGGAAGTACAGAAGGCGGCTATGGATAAGACGCCAAATGGAAAAGTCCCTACCATAAGAGTACTGAGAGGACAGGATCCGCCATTCTCAAATCAAGATCTGGGGATGATGAAAAAATATCATAGGATGTATTCAGCATTGGCCACTTATGGCCTAACTGAGGAGGAAAGCGCGATGTTGAAAATGTTGGAAAAGGATCTGTCTTCAGAGTCATACCTAATCACTGAGGATTCTAGCATCGGCTTAAAAATAAGTTATCAAGCAATGATGGAGAATTGTAAGCTAGAAGCCAATACTGATAACTTACCTATTTCTGATGCTGACCTGACTTACCTCTGCACCTACCATAAACAACATCCAGCTGCTGAGATTTATGGATTCACATCGGCCGAGAGCAAATTACTAGATAATTTGTCCAAATACTTGCGGGCTCGTGCAATCGAGTGGCAAGCAGAGACAGAGAACGCATCCACCAAGCTGACAACTGGGGCCATCAAAGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

1169

Amino Acids

133.43

Weight (kDa)

8.15

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 224 - 313 1.9e-12 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1071, 2426
AasI GACNNNNNNGTC 1 cut(s) 1732
Acc16I TGCGCA 1 cut(s) 950
AccB7I CCANNNNNTGG 1 cut(s) 169
AccBSI CCGCTC 1 cut(s) 2285
AccI GTMKAC 1 cut(s) 744
AccII CGCG 3 cut(s) 623, 625, 3176
AccIII TCCGGA 2 cut(s) 511, 1504
AciI CCGC 9 cut(s) 173, 621, 870, 1282, 1754, 2285, 3020, 3083, 3430
AclI AACGTT 1 cut(s) 77
AclWI GGATC 5 cut(s) 1482, 1613, 3074, 3087, 3207
AcsI RAATTY 6 cut(s) 551, 908, 1412, 2131, 2689, 2811
AcuI CTGAAG 4 cut(s) 1517, 2421, 2559, 3192
AcyI GRCGYC 1 cut(s) 3035
AfaI GTAC 6 cut(s) 5, 1565, 1752, 1974, 3012, 3066
AfiI CCNNNNNNNGG 9 cut(s) 169, 311, 341, 416, 1216, 1635, 1660, 2794, 3163
AflII CTTAAG 1 cut(s) 1976
AjnI CCWGG 3 cut(s) 485, 1861, 2746
AleI CACNNNNGTG 1 cut(s) 1001
Alw26I GTCTC 6 cut(s) 525, 972, 1028, 1502, 2468, 3452
AlwI GGATC 5 cut(s) 1482, 1613, 3074, 3087, 3207
AlwNI CAGNNNCTG 1 cut(s) 3368
Ama87I CYCGRG 1 cut(s) 54
Aor13HI TCCGGA 2 cut(s) 511, 1504
ApaI GGGCCC 1 cut(s) 1630
ApeKI GCWGC 8 cut(s) 262, 827, 1151, 1779, 2351, 2354, 2362, 3365
ApoI RAATTY 6 cut(s) 551, 908, 1412, 2131, 2689, 2811
ArsI GACNNNNNNTTYG 4 cut(s) 777, 809, 1304, 1336
Asp700I GAANNNNTTC 1 cut(s) 2945
AspA2I CCTAGG 2 cut(s) 410, 1622
AspLEI GCGC 3 cut(s) 625, 951, 3176
AspS9I GGNCC 8 cut(s) 464, 689, 841, 1626, 1627, 1988, 2902, 3492
AsuC2I CCSGG 1 cut(s) 613
AsuHPI GGTGA 5 cut(s) 193, 610, 2101, 2495, 2606
AvaI CYCGRG 1 cut(s) 54
AvaII GGWCC 1 cut(s) 2902
AvrII CCTAGG 2 cut(s) 410, 1622
AxyI CCTNAGG 1 cut(s) 1377
BaeGI GKGCMC 1 cut(s) 1630
BalI TGGCCA 3 cut(s) 350, 1600, 3146
BamHI GGATCC 1 cut(s) 3079
BanII GRGCYC 2 cut(s) 1630, 3436
BarI GAAGNNNNNNTAC 2 cut(s) 1556, 1588
BauI CACGAG 1 cut(s) 3435
BbsI GAAGAC 4 cut(s) 1730, 2233, 2548, 3198
BbvCI CCTCAGC 2 cut(s) 1227, 2871
BbvI GCAGC 8 cut(s) 274, 839, 1138, 1791, 2338, 2341, 2374, 3352
BccI CCATC 6 cut(s) 1247, 2135, 2486, 2532, 3265, 3503
BceAI ACGGC 5 cut(s) 304, 498, 1378, 1767, 1965
BcgI CGANNNNNNTGC 4 cut(s) 819, 853, 1130, 1164
BciT130I CCWGG 3 cut(s) 487, 1863, 2748
BclI TGATCA 2 cut(s) 1324, 1846
BcnI CCSGG 1 cut(s) 613
BcoDI GTCTC 6 cut(s) 525, 972, 1028, 1502, 2468, 3452
BfmI CTRYAG 3 cut(s) 459, 597, 775
BfrI CTTAAG 1 cut(s) 1976
BglI GCCNNNNNGGC 1 cut(s) 1958
BglII AGATCT 1 cut(s) 3100
BlnI CCTAGG 2 cut(s) 410, 1622
BlpI GCTNAGC 2 cut(s) 633, 1524
BmcAI AGTACT 2 cut(s) 1974, 3066
Bme1390I CCNGG 4 cut(s) 487, 613, 1863, 2748
Bme18I GGWCC 1 cut(s) 2902
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 8 cut(s) 464, 689, 841, 1626, 1627, 1988, 2902, 3492
BmiI GGNNCC 6 cut(s) 471, 720, 1628, 1665, 3081, 3493
BmrFI CCNGG 4 cut(s) 487, 613, 1863, 2748
BmrI ACTGGG 2 cut(s) 748, 3498
BmsI GCATC 6 cut(s) 1453, 1681, 2686, 3249, 3310, 3479
BmuI ACTGGG 2 cut(s) 748, 3498
BpiI GAAGAC 4 cut(s) 1730, 2233, 2548, 3198
Bpu10I CCTNAGC 4 cut(s) 1227, 2504, 2871, 2985
Bpu1102I GCTNAGC 2 cut(s) 633, 1524
BpuEI CTTGAG 4 cut(s) 170, 1023, 2144, 2492
BpuMI CCSGG 1 cut(s) 613
Bsa29I ATCGAT 1 cut(s) 2185
BsaAI YACGTR 1 cut(s) 361
BsaBI GATNNNNATC 3 cut(s) 2118, 2700, 3385
BsaHI GRCGYC 1 cut(s) 3035
BsaI GGTCTC 1 cut(s) 2468
BsaWI WCCGGW 2 cut(s) 511, 1504
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 9 cut(s) 169, 311, 341, 416, 1216, 1635, 1660, 2794, 3163
Bse118I RCCGGY 4 cut(s) 466, 686, 1714, 1756
Bse1I ACTGG 8 cut(s) 743, 1175, 1550, 1667, 1761, 2252, 2816, 3493
Bse21I CCTNAGG 1 cut(s) 1377
Bse3DI GCAATG 2 cut(s) 1936, 3273
Bse8I GATNNNNATC 3 cut(s) 2118, 2700, 3385
BseAI TCCGGA 2 cut(s) 511, 1504
BseBI CCWGG 3 cut(s) 487, 1863, 2748
BseCI ATCGAT 1 cut(s) 2185
BseGI GGATG 7 cut(s) 1690, 1696, 1972, 3114, 3135, 3358, 3470
BseJI GATNNNNATC 3 cut(s) 2118, 2700, 3385
BseLI CCNNNNNNNGG 9 cut(s) 169, 311, 341, 416, 1216, 1635, 1660, 2794, 3163
BseMI GCAATG 2 cut(s) 1936, 3273
BseNI ACTGG 8 cut(s) 743, 1175, 1550, 1667, 1761, 2252, 2816, 3493
BseRI GAGGAG 4 cut(s) 72, 1672, 2107, 3179
BseSI GKGCMC 1 cut(s) 1630
BseX3I CGGCCG 2 cut(s) 1137, 3390
BseXI GCAGC 8 cut(s) 274, 839, 1138, 1791, 2338, 2341, 2374, 3352
BsgI GTGCAG 3 cut(s) 904, 1798, 3325
Bsh1236I CGCG 3 cut(s) 623, 625, 3176
Bsh1285I CGRYCG 2 cut(s) 1140, 3393
BshVI ATCGAT 1 cut(s) 2185
BsiEI CGRYCG 2 cut(s) 1140, 3393
BsiHKCI CYCGRG 1 cut(s) 54
BsiSI CCGG 7 cut(s) 467, 512, 613, 687, 1505, 1715, 1757
BslFI GGGAC 3 cut(s) 1954, 1983, 3035
BslI CCNNNNNNNGG 9 cut(s) 169, 311, 341, 416, 1216, 1635, 1660, 2794, 3163
BsmAI GTCTC 6 cut(s) 525, 972, 1028, 1502, 2468, 3452
BsmBI CGTCTC 1 cut(s) 1502
BsmFI GGGAC 3 cut(s) 1954, 1983, 3035
BsmI GAATGC 2 cut(s) 637, 1432
Bso31I GGTCTC 1 cut(s) 2468
BsoBI CYCGRG 1 cut(s) 54
Bsp120I GGGCCC 1 cut(s) 1626
Bsp1286I GDGCHC 2 cut(s) 1630, 3436
Bsp13I TCCGGA 2 cut(s) 511, 1504
Bsp1407I TGTACA 1 cut(s) 3
Bsp1720I GCTNAGC 2 cut(s) 633, 1524
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 9 cut(s) 173, 621, 870, 1282, 1754, 2285, 3020, 3083, 3430
BspDI ATCGAT 1 cut(s) 2185
BspEI TCCGGA 2 cut(s) 511, 1504
BspFNI CGCG 3 cut(s) 623, 625, 3176
BspHI TCATGA 1 cut(s) 2260
BspLI GGNNCC 6 cut(s) 471, 720, 1628, 1665, 3081, 3493
BspPI GGATC 5 cut(s) 1482, 1613, 3074, 3087, 3207
BspQI GCTCTTC 1 cut(s) 2952
BspTI CTTAAG 1 cut(s) 1976
BspTNI GGTCTC 1 cut(s) 2468
BsrBI CCGCTC 1 cut(s) 2285
BsrDI GCAATG 2 cut(s) 1936, 3273
BsrFI RCCGGY 4 cut(s) 466, 686, 1714, 1756
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 8 cut(s) 743, 1175, 1550, 1667, 1761, 2252, 2816, 3493
BssAI RCCGGY 4 cut(s) 466, 686, 1714, 1756
BssNI GRCGYC 1 cut(s) 3035
BssSI CACGAG 1 cut(s) 3435
BssT1I CCWWGG 6 cut(s) 257, 410, 1108, 1622, 2001, 2651
Bst2BI CACGAG 1 cut(s) 3435
Bst2UI CCWGG 3 cut(s) 487, 1863, 2748
Bst4CI ACNGT 9 cut(s) 100, 389, 427, 460, 1084, 1460, 1679, 1793, 1997
Bst6I CTCTTC 3 cut(s) 1026, 2892, 2952
BstACI GRCGYC 1 cut(s) 3035
BstAFI CTTAAG 1 cut(s) 1976
BstAPI GCANNNNNTGC 2 cut(s) 208, 1785
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 8 cut(s) 267, 468, 1758, 1927, 2910, 2964, 3432, 3453
BstDSI CCRYGG 2 cut(s) 257, 1947
BstEII GGTNACC 2 cut(s) 1798, 2483
BstENI CCTNNNNNAGG 1 cut(s) 3161
BstF5I GGATG 7 cut(s) 1690, 1696, 1972, 3114, 3135, 3358, 3470
BstFNI CGCG 3 cut(s) 623, 625, 3176
BstHHI GCGC 3 cut(s) 625, 951, 3176
BstMAI GTCTC 6 cut(s) 525, 972, 1028, 1502, 2468, 3452
BstMCI CGRYCG 2 cut(s) 1140, 3393
BstMWI GCNNNNNNNGC 9 cut(s) 208, 629, 809, 1049, 1097, 1785, 1825, 1958, 2705
BstNI CCWGG 3 cut(s) 487, 1863, 2748
BstNSI RCATGY 1 cut(s) 1925
BstPI GGTNACC 2 cut(s) 1798, 2483
BstSCI CCNGG 4 cut(s) 485, 611, 1861, 2746
BstSFI CTRYAG 3 cut(s) 459, 597, 775
BstSLI GKGCMC 1 cut(s) 1630
BstUI CGCG 3 cut(s) 623, 625, 3176
BstV1I GCAGC 8 cut(s) 274, 839, 1138, 1791, 2338, 2341, 2374, 3352
BstV2I GAAGAC 4 cut(s) 1730, 2233, 2548, 3198
BstX2I RGATCY 4 cut(s) 1474, 3079, 3100, 3199
BstXI CCANNNNNNTGG 1 cut(s) 1003
BstYI RGATCY 4 cut(s) 1474, 3079, 3100, 3199
BstZI CGGCCG 2 cut(s) 1137, 3390
Bsu15I ATCGAT 1 cut(s) 2185
Bsu36I CCTNAGG 1 cut(s) 1377
BsuTUI ATCGAT 1 cut(s) 2185
BtgI CCRYGG 2 cut(s) 257, 1947
BtgZI GCGATG 3 cut(s) 640, 2759, 3191
BtsCI GGATG 7 cut(s) 1690, 1696, 1972, 3114, 3135, 3358, 3470
BtsIMutI CAGTG 5 cut(s) 580, 680, 1182, 1768, 3225
Cac8I GCNNGC 8 cut(s) 267, 468, 1758, 1927, 2910, 2964, 3432, 3453
CaiI CAGNNNCTG 1 cut(s) 3368
CciI TCATGA 1 cut(s) 2260
CfoI GCGC 3 cut(s) 625, 951, 3176
Cfr10I RCCGGY 4 cut(s) 466, 686, 1714, 1756
Cfr13I GGNCC 8 cut(s) 464, 689, 841, 1626, 1627, 1988, 2902, 3492
ClaI ATCGAT 1 cut(s) 2185
CseI GACGC 2 cut(s) 2400, 3043
CsiI ACCWGGT 1 cut(s) 2746
Csp6I GTAC 6 cut(s) 4, 1564, 1751, 1973, 3011, 3065
CspCI CAANNNNNGTGG 2 cut(s) 1701, 1736
CviQI GTAC 6 cut(s) 4, 1564, 1751, 1973, 3011, 3065
DraI TTTAAA 2 cut(s) 28, 2754
DrdI GACNNNNNNGTC 1 cut(s) 1732
DseDI GACNNNNNNGTC 1 cut(s) 1732
EagI CGGCCG 2 cut(s) 1137, 3390
Eam1104I CTCTTC 3 cut(s) 1026, 2892, 2952
EarI CTCTTC 3 cut(s) 1026, 2892, 2952
EciI GGCGGA 1 cut(s) 3072
EclXI CGGCCG 2 cut(s) 1137, 3390
Eco130I CCWWGG 6 cut(s) 257, 410, 1108, 1622, 2001, 2651
Eco24I GRGCYC 2 cut(s) 1630, 3436
Eco31I GGTCTC 1 cut(s) 2468
Eco32I GATATC 1 cut(s) 1300
Eco47I GGWCC 1 cut(s) 2902
Eco52I CGGCCG 2 cut(s) 1137, 3390
Eco57I CTGAAG 4 cut(s) 1517, 2421, 2559, 3192
Eco81I CCTNAGG 1 cut(s) 1377
Eco88I CYCGRG 1 cut(s) 54
Eco91I GGTNACC 2 cut(s) 1798, 2483
EcoNI CCTNNNNNAGG 1 cut(s) 3161
EcoO109I RGGNCCY 1 cut(s) 1626
EcoO65I GGTNACC 2 cut(s) 1798, 2483
EcoRII CCWGG 3 cut(s) 485, 1861, 2746
EcoRV GATATC 1 cut(s) 1300
EcoT14I CCWWGG 6 cut(s) 257, 410, 1108, 1622, 2001, 2651
EcoT22I ATGCAT 1 cut(s) 1696
EcoT38I GRGCYC 2 cut(s) 1630, 3436
ErhI CCWWGG 6 cut(s) 257, 410, 1108, 1622, 2001, 2651
Esp3I CGTCTC 1 cut(s) 1502
FalI AAGNNNNNCTT 8 cut(s) 2089, 2121, 2406, 2438, 2817, 2849, 2930, 2962
FaqI GGGAC 3 cut(s) 1954, 1983, 3035
FauI CCCGC 2 cut(s) 1289, 3423
FbaI TGATCA 2 cut(s) 1324, 1846
FblI GTMKAC 1 cut(s) 744
FokI GGATG 7 cut(s) 1697, 1703, 1979, 3121, 3142, 3345, 3457
FriOI GRGCYC 2 cut(s) 1630, 3436
FspI TGCGCA 1 cut(s) 950
GlaI GCGC 3 cut(s) 624, 950, 3175
HapII CCGG 7 cut(s) 467, 512, 613, 687, 1505, 1715, 1757
HgaI GACGC 2 cut(s) 2400, 3043
HhaI GCGC 3 cut(s) 625, 951, 3176
Hin1I GRCGYC 1 cut(s) 3035
Hin6I GCGC 3 cut(s) 623, 949, 3174
HinP1I GCGC 3 cut(s) 623, 949, 3174
HincII GTYRAC 7 cut(s) 423, 712, 745, 892, 1555, 1570, 2103
HindII GTYRAC 7 cut(s) 423, 712, 745, 892, 1555, 1570, 2103
HindIII AAGCTT 1 cut(s) 2757
HpaI GTTAAC 2 cut(s) 423, 892
HpaII CCGG 7 cut(s) 467, 512, 613, 687, 1505, 1715, 1757
HphI GGTGA 5 cut(s) 193, 610, 2101, 2495, 2606
Hpy99I CGWCG 2 cut(s) 2160, 2163
HpyAV CCTTC 9 cut(s) 1111, 1626, 2091, 2369, 2534, 2788, 2843, 2998, 3010
HpyCH4III ACNGT 9 cut(s) 100, 389, 427, 460, 1084, 1460, 1679, 1793, 1997
HpyCH4IV ACGT 3 cut(s) 77, 360, 1566
HpyF10VI GCNNNNNNNGC 9 cut(s) 208, 629, 809, 1049, 1097, 1785, 1825, 1958, 2705
HpySE526I ACGT 3 cut(s) 77, 360, 1566
Hsp92I GRCGYC 1 cut(s) 3035
HspAI GCGC 3 cut(s) 623, 949, 3174
Kpn2I TCCGGA 2 cut(s) 511, 1504
KroI GCCGGC 2 cut(s) 466, 1756
KroNI GCCGGC 2 cut(s) 468, 1758
Ksp22I TGATCA 2 cut(s) 1324, 1846
KspAI GTTAAC 2 cut(s) 423, 892
LguI GCTCTTC 1 cut(s) 2952
LmnI GCTCC 4 cut(s) 475, 724, 901, 1663
Lsp1109I GCAGC 8 cut(s) 274, 839, 1138, 1791, 2338, 2341, 2374, 3352
LweI GCATC 6 cut(s) 1453, 1681, 2686, 3249, 3310, 3479
MabI ACCWGGT 1 cut(s) 2746
MaeII ACGT 3 cut(s) 77, 360, 1566
MaeIII GTNAC 5 cut(s) 793, 1649, 1798, 2254, 2483
MbiI CCGCTC 1 cut(s) 2285
MfeI CAATTG 2 cut(s) 1444, 2952
MflI RGATCY 4 cut(s) 1474, 3079, 3100, 3199
MhlI GDGCHC 2 cut(s) 1630, 3436
MlsI TGGCCA 3 cut(s) 350, 1600, 3146
MluNI TGGCCA 3 cut(s) 350, 1600, 3146
MlyI GAGTC 6 cut(s) 845, 1030, 1901, 1936, 2665, 3221
MmeI TCCRAC 1 cut(s) 3171
Mox20I TGGCCA 3 cut(s) 350, 1600, 3146
Mph1103I ATGCAT 1 cut(s) 1696
MroI TCCGGA 2 cut(s) 511, 1504
MroNI GCCGGC 2 cut(s) 466, 1756
MroXI GAANNNNTTC 1 cut(s) 2945
MscI TGGCCA 3 cut(s) 350, 1600, 3146
MslI CAYNNNNRTG 2 cut(s) 276, 1001
Msp20I TGGCCA 3 cut(s) 350, 1600, 3146
MspA1I CMGCKG 1 cut(s) 3365
MspCI CTTAAG 1 cut(s) 1976
MspI CCGG 7 cut(s) 467, 512, 613, 687, 1505, 1715, 1757
MspR9I CCNGG 4 cut(s) 487, 613, 1863, 2748
MunI CAATTG 2 cut(s) 1444, 2952
Mva1269I GAATGC 2 cut(s) 637, 1432
MvaI CCWGG 3 cut(s) 487, 1863, 2748
MvnI CGCG 3 cut(s) 623, 625, 3176
MwoI GCNNNNNNNGC 9 cut(s) 208, 629, 809, 1049, 1097, 1785, 1825, 1958, 2705
NaeI GCCGGC 2 cut(s) 468, 1758
NciI CCSGG 1 cut(s) 613
NcoI CCATGG 1 cut(s) 257
NgoMIV GCCGGC 2 cut(s) 466, 1756
NlaIV GGNNCC 6 cut(s) 471, 720, 1628, 1665, 3081, 3493
NmeAIII GCCGAG 5 cut(s) 1165, 1987, 2306, 2846, 3418
NmuCI GTSAC 3 cut(s) 793, 1649, 2483
NsbI TGCGCA 1 cut(s) 950
NsiI ATGCAT 1 cut(s) 1696
NspI RCATGY 1 cut(s) 1925
OliI CACNNNNGTG 1 cut(s) 1001
PaeR7I CTCGAG 1 cut(s) 54
PagI TCATGA 1 cut(s) 2260
PciSI GCTCTTC 1 cut(s) 2952
PctI GAATGC 2 cut(s) 637, 1432
PdiI GCCGGC 2 cut(s) 468, 1758
PdmI GAANNNNTTC 1 cut(s) 2945
PflMI CCANNNNNTGG 1 cut(s) 169
PleI GAGTC 6 cut(s) 844, 1030, 1901, 1936, 2664, 3220
PpsI GAGTC 6 cut(s) 844, 1030, 1901, 1936, 2664, 3220
Ppu21I YACGTR 1 cut(s) 361
PsiI TTATAA 2 cut(s) 1071, 2426
Psp1406I AACGTT 1 cut(s) 77
Psp6I CCWGG 3 cut(s) 485, 1861, 2746
PspEI GGTNACC 2 cut(s) 1798, 2483
PspGI CCWGG 3 cut(s) 485, 1861, 2746
PspN4I GGNNCC 6 cut(s) 471, 720, 1628, 1665, 3081, 3493
PspOMI GGGCCC 1 cut(s) 1626
PspPI GGNCC 8 cut(s) 464, 689, 841, 1626, 1627, 1988, 2902, 3492
PspXI VCTCGAGB 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 3368
PsuI RGATCY 4 cut(s) 1474, 3079, 3100, 3199
PvuII CAGCTG 1 cut(s) 3365
RsaI GTAC 6 cut(s) 5, 1565, 1752, 1974, 3012, 3066
RsaNI GTAC 6 cut(s) 4, 1564, 1751, 1973, 3011, 3065
RseI CAYNNNNRTG 2 cut(s) 276, 1001
SalI GTCGAC 1 cut(s) 743
SapI GCTCTTC 1 cut(s) 2952
Sau96I GGNCC 8 cut(s) 464, 689, 841, 1626, 1627, 1988, 2902, 3492
ScaI AGTACT 2 cut(s) 1974, 3066
SchI GAGTC 6 cut(s) 845, 1030, 1901, 1936, 2665, 3221
ScrFI CCNGG 4 cut(s) 487, 613, 1863, 2748
SduI GDGCHC 2 cut(s) 1630, 3436
SexAI ACCWGGT 1 cut(s) 2746
SfaNI GCATC 6 cut(s) 1453, 1681, 2686, 3249, 3310, 3479
SfcI CTRYAG 3 cut(s) 459, 597, 775
SfiI GGCCNNNNNGGCC 1 cut(s) 1958
Sfr274I CTCGAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 2902
SlaI CTCGAG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 276, 1001
SmlI CTYRAG 6 cut(s) 54, 149, 1038, 1976, 2123, 2471
SmoI CTYRAG 6 cut(s) 54, 149, 1038, 1976, 2123, 2471
SsiI CCGC 9 cut(s) 173, 621, 870, 1282, 1754, 2285, 3020, 3083, 3430
StyD4I CCNGG 4 cut(s) 485, 611, 1861, 2746
StyI CCWWGG 6 cut(s) 257, 410, 1108, 1622, 2001, 2651
TaaI ACNGT 9 cut(s) 100, 389, 427, 460, 1084, 1460, 1679, 1793, 1997
TaiI ACGT 3 cut(s) 80, 363, 1569
TaqI TCGA 8 cut(s) 55, 429, 744, 1122, 1482, 1533, 2185, 3444
TatI WGTACW 4 cut(s) 3, 1972, 3010, 3064
TauI GCSGC 4 cut(s) 176, 872, 2288, 3023
TscAI CASTG 5 cut(s) 580, 687, 1182, 1768, 3232
TseFI GTSAC 3 cut(s) 793, 1649, 2483
TseI GCWGC 8 cut(s) 262, 827, 1151, 1779, 2351, 2354, 2362, 3365
Tsp45I GTSAC 3 cut(s) 793, 1649, 2483
TspRI CASTG 5 cut(s) 580, 687, 1182, 1768, 3232
Van91I CCANNNNNTGG 1 cut(s) 169
Vha464I CTTAAG 1 cut(s) 1976
VpaK11BI GGWCC 1 cut(s) 2902
XagI CCTNNNNNAGG 1 cut(s) 3161
XapI RAATTY 6 cut(s) 551, 908, 1412, 2131, 2689, 2811
XbaI TCTAGA 1 cut(s) 641
XceI RCATGY 1 cut(s) 1925
XcmI CCANNNNNNNNNTGG 2 cut(s) 1250, 1954
XhoI CTCGAG 1 cut(s) 54
XmaJI CCTAGG 2 cut(s) 410, 1622
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 2945
ZrmI AGTACT 2 cut(s) 1974, 3066
Zsp2I ATGCAT 1 cut(s) 1696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.