Rmu_sc0003623.1_g000021

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003623.1
OG0000560
Physical Location & Seq
Forward (+)
54115 .. 54840
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003623.1_g000021.1.cds

Sequence Viewer

Length: 726 bp
atgcaaagggaagtggcggccgcaaggcagcaagggtctgaagggcaggaaatcaaacgctcaactgaagcctataacagaaaagctcccataataagagagaactttcataaggattcaggagaacttatggaacttgagaccatcggtgaccagtttgagaatgttcttagcttcccaaagctaccttatatgcggtatactgaaggagtggtaaatatattcaaacatctcaaccctccatttaagttggctgaattagaaacaatgagaaagttccatcagaaacattcagcccttgcagtctatggacttccaaggagccaagattatattctcaatacaataatggcaaattctgatgcagatcatgctctgattcggcagggtttccatagccgattcattactcctagtttgaaagcgttatatcaagcgcatcgcaaaggaatccaaaagaaggatatcgtcgctaaaattccagtttcagaagccgaatttcatttccttagatgttttcataaaagtcactcggctgtggaaacctatggcataacaccagaagaggtccagcttgcaagagaactagatgattatttagagaagaaagacttcgcaactgaagagcaagcgaaggctgatgccaaagctaaggatattgaacaacagaaagagatacagaaggcggctagggataagacgccaaatgggaaaatcccaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

241

Amino Acids

27.66

Weight (kDa)

8.45

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AciI CCGC 4 cut(s) 17, 21, 196, 686
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 3 cut(s) 355, 477, 497
AcuI CTGAAG 4 cut(s) 60, 87, 225, 642
AcyI GRCGYC 1 cut(s) 701
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 226, 421, 662
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 5 cut(s) 86, 174, 184, 574, 650
AluI AGCT 5 cut(s) 86, 174, 184, 574, 650
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 355, 477, 497
Asp700I GAANNNNTTC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 1 cut(s) 568
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 568
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 152, 288
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 3 cut(s) 414, 587, 690
BisI GCNGC 4 cut(s) 18, 21, 29, 687
BlsI GCNGC 4 cut(s) 19, 22, 30, 688
Bme18I GGWCC 1 cut(s) 568
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 323
BmsI GCATC 3 cut(s) 352, 448, 631
Bpu10I CCTNAGC 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 154, 482
Bse8I GATNNNNATC 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 460
BseNI ACTGG 2 cut(s) 154, 482
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 4 cut(s) 17, 21, 196, 686
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 154, 482
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 367
BssNAI GTATAC 1 cut(s) 201
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 1 cut(s) 317
Bst1107I GTATAC 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 558, 618
BstACI GRCGYC 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 576, 630
BstDEI CTNAG 3 cut(s) 170, 509, 651
BstEII GGTNACC 1 cut(s) 149
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 367
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 201
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 20
BtgZI GCGATG 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 576, 630
CciNI GCGGCCGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 568
CseI GACGC 1 cut(s) 709
CviAII CATG 1 cut(s) 371
DdeI CTNAG 3 cut(s) 170, 509, 651
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 558, 618
EarI CTCTTC 2 cut(s) 558, 618
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 568
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 4 cut(s) 60, 87, 225, 642
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 374
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FatI CATG 1 cut(s) 370
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 4 cut(s) 18, 21, 29, 687
Fsp4HI GCNGC 4 cut(s) 18, 21, 29, 687
FspBI CTAG 3 cut(s) 414, 587, 690
GlaI GCGC 1 cut(s) 438
GluI GCNGC 4 cut(s) 18, 21, 29, 687
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 709
HhaI GCGC 1 cut(s) 439
Hin1I GRCGYC 1 cut(s) 701
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HinfI GANTC 4 cut(s) 116, 379, 402, 450
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 5 cut(s) 40, 285, 361, 378, 490
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 5 cut(s) 35, 200, 454, 628, 676
HpyCH4V TGCA 4 cut(s) 4, 302, 365, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 3 cut(s) 170, 509, 651
Hsp92I GRCGYC 1 cut(s) 701
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 1 cut(s) 437
Kzo9I GATC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 91, 321
LpnPI CCDG 7 cut(s) 32, 105, 167, 371, 495, 573, 584
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 3 cut(s) 352, 448, 631
MaeI CTAG 3 cut(s) 414, 587, 690
MaeIII GTNAC 2 cut(s) 149, 527
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 575, 616, 635
MluCI AATT 4 cut(s) 257, 355, 477, 497
MnlI CCTC 2 cut(s) 249, 559
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 374
NlaIV GGNNCC 1 cut(s) 323
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 2 cut(s) 149, 527
NotI GCGGCCGC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 4 cut(s) 116, 379, 402, 450
PkrI GCNGC 4 cut(s) 19, 22, 30, 688
PspEI GGTNACC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 568
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 4 cut(s) 18, 21, 29, 687
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 568
SetI ASST 8 cut(s) 88, 176, 186, 190, 548, 570, 576, 652
SfaNI GCATC 3 cut(s) 352, 448, 631
SinI GGWCC 1 cut(s) 568
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 257, 355, 477, 497
SsiI CCGC 4 cut(s) 17, 21, 196, 686
SspMI CTAG 3 cut(s) 414, 587, 690
StyI CCWWGG 1 cut(s) 317
TasI AATT 4 cut(s) 257, 355, 477, 497
TauI GCSGC 3 cut(s) 20, 23, 689
TfiI GAWTC 4 cut(s) 116, 379, 402, 450
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 2 cut(s) 149, 527
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 149, 527
TspDTI ATGAA 4 cut(s) 98, 394, 491, 509
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 3 cut(s) 355, 477, 497
XmiI GTMKAC 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 3 cut(s) 414, 587, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.