Rmu_sc0027245.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027245.1
OG0000560
Physical Location & Seq
Forward (+)
5358 .. 6309
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027245.1_g000005.1.cds

Sequence Viewer

Length: 721 bp
atgtctagagaccagcatgtggcacccttgacaaaaacccagaggctccggcaacaacgtgaacttgctttttccaggaaggaagaagaggaaaaatgtgagcaagaaaggctgagaaaggttcaagaacaaggtgaacatgagaagtcccagagaggtagctcgacatcaacttctcgggttactacaactccagtgccgagattgaaggtagtacagaaagaggtttcaccgcactcagctatcaagctttatggtttacttgaggaggaggaaagactatttttagagttgtctacggatgaagacttcttggcacgacctagtattagccgaggtttaaaggctatgttccatgtagcatgggaaagttcatctccaatagtgtgtacactggaggatagatcagccttaccagtgtctgaggaagatttactgtatttaacggagtaccaccgacactattcaactgaggagttatacggccttactgagaaagaggaagaactggcaaatgcatttgattggtacatctccaagaagaagagtgaggcagggataaaagctaaagataattttcgatctgagcagatgatggttgaagtgctaaggaataaattgcctcctttttcagcaaaagattggactaccatggaagagtatcacaagaagcagtcagccttagctttatacgagccgacatgggaggagttagataccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

28.07

Weight (kDa)

5.45

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 296
AciI CCGC 1 cut(s) 233
AfaI GTAC 4 cut(s) 216, 391, 452, 530
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 4 cut(s) 125, 208, 468, 602
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 5 cut(s) 162, 242, 250, 566, 686
AluI AGCT 5 cut(s) 162, 242, 250, 566, 686
Alw26I GTCTC 1 cut(s) 3
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 146, 222
AvaI CYCGRG 1 cut(s) 177
BanI GGYRCC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 312
BccI CCATC 1 cut(s) 589
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 2 cut(s) 6, 324
Bme1390I CCNGG 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 24, 47
BmrFI CCNGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 2 cut(s) 177, 416
Bpu10I CCTNAGC 2 cut(s) 608, 682
BpuEI CTTGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 3
BsaJI CCNNGG 2 cut(s) 334, 651
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 4 cut(s) 194, 399, 416, 513
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 334, 651
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 6 cut(s) 104, 252, 414, 462, 483, 576
BseNI ACTGG 4 cut(s) 194, 399, 416, 513
BseRI GAGGAG 3 cut(s) 281, 284, 488
BshFI GGCC 1 cut(s) 486
BshNI GGYRCC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 486
Bso31I GGTCTC 1 cut(s) 3
BsoBI CYCGRG 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 389
Bsp143I GATC 2 cut(s) 404, 581
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 6 cut(s) 105, 251, 415, 463, 484, 577
BspLI GGNNCC 2 cut(s) 24, 47
BspT107I GGYRCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 3
BsrGI TGTACA 1 cut(s) 389
BsrI ACTGG 4 cut(s) 194, 399, 416, 513
BssECI CCNNGG 2 cut(s) 334, 651
BssMI GATC 2 cut(s) 404, 581
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 438
Bst6I CTCTTC 3 cut(s) 81, 539, 651
BstAUI TGTACA 1 cut(s) 389
BstDEI CTNAG 8 cut(s) 113, 238, 423, 471, 492, 585, 608, 682
BstDSI CCRYGG 1 cut(s) 651
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 407, 584
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 404, 581
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 3 cut(s) 201, 392, 423
CaiI CAGNNNCTG 1 cut(s) 422
Csp6I GTAC 4 cut(s) 215, 390, 451, 529
CviAII CATG 6 cut(s) 17, 140, 356, 363, 652, 702
CviQI GTAC 4 cut(s) 215, 390, 451, 529
DdeI CTNAG 8 cut(s) 113, 238, 423, 471, 492, 585, 608, 682
DpnI GATC 2 cut(s) 406, 583
DpnII GATC 2 cut(s) 404, 581
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 3 cut(s) 81, 539, 651
EarI CTCTTC 3 cut(s) 81, 539, 651
Eco130I CCWWGG 1 cut(s) 651
Eco31I GGTCTC 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 651
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 6 cut(s) 20, 143, 359, 366, 655, 705
FaqI GGGAC 1 cut(s) 133
FatI CATG 6 cut(s) 16, 139, 355, 362, 651, 701
FblI GTMKAC 1 cut(s) 296
FokI GGATG 1 cut(s) 314
FspBI CTAG 2 cut(s) 6, 324
GsuI CTGGAG 2 cut(s) 177, 416
HaeIII GGCC 1 cut(s) 486
HapII CCGG 1 cut(s) 49
Hin1II CATG 6 cut(s) 20, 143, 359, 366, 655, 705
HindIII AAGCTT 1 cut(s) 248
HpaII CCGG 1 cut(s) 49
HphI GGTGA 2 cut(s) 146, 222
Hpy166II GTNNAC 6 cut(s) 62, 137, 260, 297, 390, 392
Hpy188I TCNGA 2 cut(s) 424, 586
Hpy188III TCNNGA 2 cut(s) 6, 125
Hpy8I GTNNAC 6 cut(s) 62, 137, 260, 297, 390, 392
HpyAV CCTTC 2 cut(s) 73, 202
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 8 cut(s) 113, 238, 423, 471, 492, 585, 608, 682
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 6 cut(s) 20, 143, 359, 366, 655, 705
Kzo9I GATC 2 cut(s) 404, 581
LmnI GCTCC 1 cut(s) 51
MaeI CTAG 2 cut(s) 6, 324
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 406, 583
MboI GATC 2 cut(s) 404, 581
MboII GAAGA 8 cut(s) 95, 98, 317, 440, 515, 553, 556, 668
MluCI AATT 2 cut(s) 574, 617
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 2 cut(s) 341, 443
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 109
NcoI CCATGG 1 cut(s) 651
NdeII GATC 2 cut(s) 404, 581
NlaIII CATG 6 cut(s) 20, 143, 359, 366, 655, 705
NlaIV GGNNCC 2 cut(s) 24, 47
NmeAIII GCCGAG 2 cut(s) 225, 359
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 24, 47
PstNI CAGNNNCTG 1 cut(s) 422
RsaI GTAC 4 cut(s) 216, 391, 452, 530
RsaNI GTAC 4 cut(s) 215, 390, 451, 529
SaqAI TTAA 2 cut(s) 341, 443
Sau3AI GATC 2 cut(s) 404, 581
ScrFI CCNGG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 574, 617
SsiI CCGC 1 cut(s) 233
SspMI CTAG 2 cut(s) 6, 324
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 1 cut(s) 438
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 164, 580
TasI AATT 2 cut(s) 574, 617
TatI WGTACW 2 cut(s) 214, 389
Tru1I TTAA 2 cut(s) 341, 443
Tru9I TTAA 2 cut(s) 341, 443
TscAI CASTG 3 cut(s) 201, 399, 423
TspDTI ATGAA 2 cut(s) 318, 363
TspGWI ACGGA 2 cut(s) 314, 461
TspRI CASTG 3 cut(s) 201, 399, 423
Van91I CCANNNNNTGG 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 296
XspI CTAG 2 cut(s) 6, 324
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.