Rroxscaffold_5G00343990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000560
Physical Location & Seq
Reverse (-)
13871358 .. 13871780
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343990.1

Sequence Viewer

Length: 423 bp
ATGCTTTCACGTAAATCACTCTACCGAGGACACCTATGGCATAACGCCGAAGAGGTCCAGCTCGCAAGAGAACTAGATGATTATTTAGAAAAGAAAGACTTCGCAACCGAAGAGCAAGCGAAGGCCGATGCCAAAGCTAAGGATATTGAACAGTTGAAGGAAATACGGAAGGCGCCTAAGGATAAAACGCCAAATGGGAAAGTCCCCACCATAAGAGTACTAAGAGGACAAGATCCTCCATTCTCAAATCAAGATCCGGGGATGATGAAGAAATATCATAGAATGTATTCGGCCTTGGCCACTTATGGCCTAACCGAGGAAGAAAGCGCGATGATGAAAATGTTGGAAAAGGATATGTCTTCGCAGTCATACCTTATCACCGAGGATTCTAGCATCGGCTTAAAGATCGCTACCGTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

16.05

Weight (kDa)

6.85

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccII CGCG 1 cut(s) 329
AclWI GGATC 2 cut(s) 227, 248
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 2 cut(s) 149, 157
AluBI AGCT 2 cut(s) 61, 137
AluI AGCT 2 cut(s) 61, 137
AlwI GGATC 2 cut(s) 227, 248
AoxI GGCC 4 cut(s) 123, 291, 297, 307
Asp700I GAANNNNTTC 2 cut(s) 98, 286
AspLEI GCGC 2 cut(s) 175, 329
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 177
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 351
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 2 cut(s) 74, 390
BfoI RGCGCY 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 118, 402
BpiI GAAGAC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 5 cut(s) 25, 257, 294, 315, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse21I CCTNAGG 1 cut(s) 177
BseDI CCNNGG 5 cut(s) 25, 257, 294, 315, 381
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 4 cut(s) 125, 293, 299, 309
BshNI GGYRCC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 4 cut(s) 125, 293, 299, 309
Bsp143I GATC 3 cut(s) 232, 253, 405
BspANI GGCC 4 cut(s) 125, 293, 299, 309
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 2 cut(s) 227, 248
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 172
BssECI CCNNGG 5 cut(s) 25, 257, 294, 315, 381
BssMI GATC 3 cut(s) 232, 253, 405
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 153, 415
Bst6I CTCTTC 2 cut(s) 45, 105
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 63, 117
BstDEI CTNAG 3 cut(s) 138, 177, 221
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 329
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 2 cut(s) 175, 329
BstKTI GATC 3 cut(s) 235, 256, 408
BstMBI GATC 3 cut(s) 232, 253, 405
BstSCI CCNGG 1 cut(s) 256
BstUI CGCG 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 232, 253
BstYI RGATCY 2 cut(s) 232, 253
Bsu36I CCTNAGG 1 cut(s) 177
BsuRI GGCC 4 cut(s) 125, 293, 299, 309
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 63, 117
CfoI GCGC 2 cut(s) 175, 329
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 218
CviJI RGCY 7 cut(s) 61, 125, 137, 293, 299, 309, 399
CviKI_1 RGCY 7 cut(s) 61, 125, 137, 293, 299, 309, 399
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 3 cut(s) 138, 177, 221
DinI GGCGCC 1 cut(s) 174
DpnI GATC 3 cut(s) 234, 255, 407
DpnII GATC 3 cut(s) 232, 253, 405
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 2 cut(s) 45, 105
EarI CTCTTC 2 cut(s) 45, 105
Eco130I CCWWGG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 294
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 294
FaiI YATR 7 cut(s) 37, 42, 212, 279, 306, 356, 370
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 188
FokI GGATG 1 cut(s) 274
FspBI CTAG 2 cut(s) 74, 390
GlaI GCGC 2 cut(s) 174, 328
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 4 cut(s) 125, 293, 299, 309
HapII CCGG 1 cut(s) 257
HhaI GCGC 2 cut(s) 175, 329
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 2 cut(s) 173, 327
HinP1I GCGC 2 cut(s) 173, 327
HinfI GANTC 1 cut(s) 386
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 115, 151, 163
HpyCH4III ACNGT 2 cut(s) 153, 415
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 418
HpyF3I CTNAG 3 cut(s) 138, 177, 221
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 2 cut(s) 173, 327
KasI GGCGCC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 232, 253, 405
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 2 cut(s) 71, 270
LweI GCATC 2 cut(s) 118, 402
MaeI CTAG 2 cut(s) 74, 390
MaeII ACGT 1 cut(s) 10
MalI GATC 3 cut(s) 234, 255, 407
MboI GATC 3 cut(s) 232, 253, 405
MboII GAAGA 5 cut(s) 62, 122, 280, 332, 351
MflI RGATCY 2 cut(s) 232, 253
MlsI TGGCCA 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 299
Mly113I GGCGCC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 6 cut(s) 20, 46, 218, 246, 310, 376
Mox20I TGGCCA 1 cut(s) 299
MroXI GAANNNNTTC 2 cut(s) 98, 286
MscI TGGCCA 1 cut(s) 299
MseI TTAA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 329
NarI GGCGCC 1 cut(s) 173
NciI CCSGG 1 cut(s) 258
NdeII GATC 3 cut(s) 232, 253, 405
NlaIV GGNNCC 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 98, 286
PfeI GAWTC 1 cut(s) 386
PluTI GGCGCC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 2 cut(s) 232, 253
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 401
Sau3AI GATC 3 cut(s) 232, 253, 405
Sau96I GGNCC 1 cut(s) 55
ScaI AGTACT 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 258
SetI ASST 6 cut(s) 13, 36, 57, 63, 139, 375
SfaNI GCATC 2 cut(s) 118, 402
SfoI GGCGCC 1 cut(s) 174
SinI GGWCC 1 cut(s) 55
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 2 cut(s) 74, 390
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 153, 415
TaiI ACGT 1 cut(s) 13
TatI WGTACW 1 cut(s) 217
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 281, 350
TspGWI ACGGA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 55
XagI CCTNNNNNAGG 1 cut(s) 314
XmnI GAANNNNTTC 2 cut(s) 98, 286
XspI CTAG 2 cut(s) 74, 390
ZrmI AGTACT 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.