Rmu_sc0002942.1_g000015

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002942.1
OG0000560
Physical Location & Seq
Forward (+)
37856 .. 38539
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002942.1_g000015.1.cds

Sequence Viewer

Length: 684 bp
atgcaaagggaagtggcggccgcaaggcagcaagggtcagaagggcaggaagtcagacgctctactgaagcagataacaaagaagcccctataataagagaagactttcataaggattcaggagaacctatggaacttgagaccatcggtgaccattttgaaaatgtccttagcttcccaaagctaccccatctgcggtttactgaaggaggggttaaggtcttcaaacatctcaaccctccatttaagttggctgaattagaaacaatgagaaagtttcaccagaaacattcagcccttgcaatttatgggcttccaaggagtcaagactatattttcaatacaatagtagcaaattctaatgccgatcatgctctgatttggcagggtttccatagccgattcattacacttggtttaaaagctttgtatcaagcacatcgcaaaggaatccaaaagaaggatatagtagctcaaattccagtttcagaagccgactttcatttccttagatgttttcatagaagtcactcggctgaggaaacctatggcatatcgccagaagaggcccagctcgcaagggaacttgatgattatttagaaaaaaaagactttgcaactgaagagcaggcgaaagccgatgccaaagctaaggatattgaacgacagaaggaagtgcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

227

Amino Acids

26.07

Weight (kDa)

6.19

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 21, 196
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 355, 477
AcuI CTGAAG 3 cut(s) 87, 225, 642
AfiI CCNNNNNNNGG 2 cut(s) 195, 460
AgsI TTSAA 4 cut(s) 161, 226, 340, 662
AluBI AGCT 6 cut(s) 174, 184, 425, 473, 574, 650
AluI AGCT 6 cut(s) 174, 184, 425, 473, 574, 650
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 2 cut(s) 18, 567
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 2 cut(s) 355, 477
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 568
AsuHPI GGTGA 2 cut(s) 161, 272
BbsI GAAGAC 2 cut(s) 108, 214
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 152, 198
BcoDI GTCTC 1 cut(s) 134
BisI GCNGC 3 cut(s) 18, 21, 29
BlsI GCNGC 3 cut(s) 19, 22, 30
BmgT120I GGNCC 1 cut(s) 568
BmsI GCATC 1 cut(s) 631
BpiI GAAGAC 2 cut(s) 108, 214
Bpu10I CCTNAGC 3 cut(s) 170, 537, 651
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 460
Bse1I ACTGG 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 317
BseLI CCNNNNNNNGG 2 cut(s) 195, 460
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 482
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 570
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 20, 569
BsiEI CGRYCG 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 195, 460
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 2 cut(s) 20, 569
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 3 cut(s) 17, 21, 196
BspANI GGCC 2 cut(s) 20, 569
BspCNI CTCAG 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 558, 618
BstC8I GCNNGC 2 cut(s) 576, 630
BstDEI CTNAG 4 cut(s) 170, 509, 537, 651
BstEII GGTNACC 1 cut(s) 149
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 367
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 371, 575
BstPI GGTNACC 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 2 cut(s) 108, 214
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 20, 569
BtgZI GCGATG 1 cut(s) 425
Cac8I GCNNGC 2 cut(s) 576, 630
CciNI GCGGCCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 568
CseI GACGC 1 cut(s) 66
CviAII CATG 1 cut(s) 371
DdeI CTNAG 4 cut(s) 170, 509, 537, 651
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 558, 618
EarI CTCTTC 2 cut(s) 558, 618
EclXI CGGCCG 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 18
Eco57I CTGAAG 3 cut(s) 87, 225, 642
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 374
FatI CATG 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 18, 21, 29
Fsp4HI GCNGC 3 cut(s) 18, 21, 29
GluI GCNGC 3 cut(s) 18, 21, 29
GsaI CCCAGC 1 cut(s) 574
HaeIII GGCC 2 cut(s) 20, 569
HgaI GACGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 4 cut(s) 116, 322, 402, 450
HphI GGTGA 2 cut(s) 161, 272
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 4 cut(s) 40, 56, 378, 490
Hpy188III TCNNGA 2 cut(s) 120, 326
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 4 cut(s) 35, 200, 454, 664
HpyCH4V TGCA 4 cut(s) 4, 302, 617, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 575
HpyF3I CTNAG 4 cut(s) 170, 509, 537, 651
Hsp92II CATG 1 cut(s) 374
Kzo9I GATC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 618
LpnPI CCDG 8 cut(s) 32, 105, 296, 371, 495, 573, 584, 614
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 631
MaeIII GTNAC 2 cut(s) 149, 527
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 4 cut(s) 113, 214, 575, 635
MluCI AATT 4 cut(s) 257, 303, 355, 477
MlyI GAGTC 1 cut(s) 331
MnlI CCTC 4 cut(s) 203, 249, 532, 559
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 3 cut(s) 216, 246, 419
MwoI GCNNNNNNNGC 2 cut(s) 371, 575
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 374
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 2 cut(s) 149, 527
NotI GCGGCCGC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 3 cut(s) 116, 402, 450
PkrI GCNGC 3 cut(s) 19, 22, 30
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
PspEI GGTNACC 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 568
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 216, 246, 419
SatI GCNGC 3 cut(s) 18, 21, 29
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 1 cut(s) 331
SetI ASST 9 cut(s) 130, 176, 186, 222, 427, 475, 548, 576, 652
SfaNI GCATC 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 257, 303, 355, 477
SsiI CCGC 3 cut(s) 17, 21, 196
StyI CCWWGG 1 cut(s) 317
TasI AATT 4 cut(s) 257, 303, 355, 477
TauI GCSGC 2 cut(s) 20, 23
TfiI GAWTC 3 cut(s) 116, 402, 450
Tru1I TTAA 3 cut(s) 216, 246, 419
Tru9I TTAA 3 cut(s) 216, 246, 419
TseFI GTSAC 2 cut(s) 149, 527
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 2 cut(s) 149, 527
TspDTI ATGAA 4 cut(s) 98, 394, 491, 509
XapI RAATTY 2 cut(s) 355, 477
XmnI GAANNNNTTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.