Rmu_sc0004723.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004723.1
OG0000560
Physical Location & Seq
Reverse (-)
44083 .. 44835
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004723.1_g000009.1.cds

Sequence Viewer

Length: 753 bp
atgggaaaaattcccaccataagagtactgagaggacaagaaccgccgttctcaaatcaagacctggggatgatgaataaatatgataggatgtattcagcattggctacttatggcctaaccgaggagaaaagcgcgatgattaagatgttagaaaaggatctatcttcagagtcatacctcatcactaaggattctagtatcggcttaaagatcagttatcaggcaatgatagagaactgtaagctggaagccaacactgataacttgcccatttctgattctgaccttgcttatcttcacacttaccataaacaacatccggttgttgagatgtatggattcatgtccgccgagagcaaattattggacaatttgtccaaatacttgcgggctcgtgcaattgagtggcaagctgagacggaaaagacaaccactaagctgacaactggagctattaaagagttaaaaaaagagcaagctagtctcaatcaacaaaataaggatgaggaaatggtagacggtgctgccacgaataatggcaagcaggacgattttggagacgatggtgatgaggaagtcgactatggggaagaggaagaacaagacataggagatgatacagcttttgacatagaaatcttatccccattttacaaaggcgaggctgcctttggaaaaggagaaggtaatacaagggacatcaacatgttttatgtcctaccttcagagctccaagctcagccaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.08

Weight (kDa)

4.49

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 519, 582
AccII CGCG 1 cut(s) 137
AciI CCGC 3 cut(s) 44, 351, 391
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 153, 711
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 708
AhdI GACNNNNNGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 63, 745
AluBI AGCT 8 cut(s) 247, 416, 442, 455, 482, 626, 733, 740
AluI AGCT 8 cut(s) 247, 416, 442, 455, 482, 626, 733, 740
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 3 cut(s) 413, 491, 555
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 527, 668
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 581
BanII GRGCYC 2 cut(s) 397, 735
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 514, 655
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 65, 747
BcoDI GTCTC 3 cut(s) 413, 491, 555
BfaI CTAG 2 cut(s) 198, 483
BisI GCNGC 2 cut(s) 528, 669
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 2 cut(s) 529, 670
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 65, 747
BmeRI GACNNNNNGTC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 65, 747
BpmI CTGGAG 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 64, 123
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 65, 747
BseDI CCNNGG 2 cut(s) 64, 123
BseGI GGATG 4 cut(s) 75, 96, 319, 511
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 20, 408
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 514, 655
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 413, 491, 555
BsmBI CGTCTC 2 cut(s) 413, 555
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 397, 735
Bsp143I GATC 2 cut(s) 160, 213
Bsp1720I GCTNAGC 1 cut(s) 741
BspACI CCGC 3 cut(s) 44, 351, 391
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 21, 409
BspFNI CGCG 1 cut(s) 137
BspPI GGATC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 64, 123
BssMI GATC 2 cut(s) 160, 213
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 65, 747
Bst4CI ACNGT 2 cut(s) 242, 524
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 4 cut(s) 393, 414, 480, 545
BstDEI CTNAG 5 cut(s) 29, 189, 417, 438, 741
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 4 cut(s) 75, 96, 319, 511
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 163, 216
BstMAI GTCTC 3 cut(s) 413, 491, 555
BstMBI GATC 2 cut(s) 160, 213
BstNI CCWGG 2 cut(s) 65, 747
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 63, 745
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 514, 655
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 4 cut(s) 75, 96, 319, 511
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 4 cut(s) 393, 414, 480, 545
CfoI GCGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 26
CviAII CATG 2 cut(s) 346, 709
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 5 cut(s) 29, 189, 417, 438, 741
DpnI GATC 2 cut(s) 162, 215
DpnII GATC 2 cut(s) 160, 213
DriI GACNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 588
Eam1105I GACNNNNNGTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 340
Ecl136II GAGCTC 1 cut(s) 733
Eco24I GRGCYC 2 cut(s) 397, 735
Eco53kI GAGCTC 1 cut(s) 733
Eco57I CTGAAG 2 cut(s) 153, 711
EcoICRI GAGCTC 1 cut(s) 733
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 63, 745
EcoT38I GRGCYC 2 cut(s) 397, 735
Esp3I CGTCTC 2 cut(s) 413, 555
FaeI CATG 2 cut(s) 349, 712
FaqI GGGAC 1 cut(s) 713
FatI CATG 2 cut(s) 345, 708
FauI CCCGC 1 cut(s) 384
FblI GTMKAC 2 cut(s) 519, 582
Fnu4HI GCNGC 2 cut(s) 528, 669
FokI GGATG 4 cut(s) 82, 103, 306, 518
FriOI GRGCYC 2 cut(s) 397, 735
Fsp4HI GCNGC 2 cut(s) 528, 669
FspBI CTAG 2 cut(s) 198, 483
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 528, 669
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 349, 712
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 4 cut(s) 173, 194, 281, 342
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 2 cut(s) 520, 583
Hpy188I TCNGA 4 cut(s) 172, 280, 286, 730
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 2 cut(s) 520, 583
HpyAV CCTTC 2 cut(s) 680, 735
HpyCH4III ACNGT 2 cut(s) 242, 524
HpyCH4V TGCA 1 cut(s) 401
HpyF3I CTNAG 5 cut(s) 29, 189, 417, 438, 741
Hsp92II CATG 2 cut(s) 349, 712
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 160, 213
LmnI GCTCC 2 cut(s) 452, 738
LpnPI CCDG 8 cut(s) 50, 77, 209, 233, 336, 435, 533, 732
Lsp1109I GCAGC 2 cut(s) 514, 655
MaeI CTAG 2 cut(s) 198, 483
MalI GATC 2 cut(s) 162, 215
MboI GATC 2 cut(s) 160, 213
MboII GAAGA 4 cut(s) 159, 290, 605, 611
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 397, 735
MluCI AATT 4 cut(s) 9, 362, 373, 402
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 7 cut(s) 26, 118, 191, 502, 568, 589, 658
MseI TTAA 4 cut(s) 144, 209, 459, 467
MslI CAYNNNNRTG 1 cut(s) 707
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 65, 747
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 65, 747
MvnI CGCG 1 cut(s) 137
NdeII GATC 2 cut(s) 160, 213
NlaIII CATG 2 cut(s) 349, 712
NmeAIII GCCGAG 1 cut(s) 379
NspI RCATGY 1 cut(s) 712
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 3 cut(s) 194, 281, 342
PkrI GCNGC 2 cut(s) 529, 670
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 735
Psp6I CCWGG 2 cut(s) 63, 745
PspGI CCWGG 2 cut(s) 63, 745
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 707
SacI GAGCTC 1 cut(s) 735
SalI GTCGAC 1 cut(s) 581
SaqAI TTAA 4 cut(s) 144, 209, 459, 467
SatI GCNGC 2 cut(s) 528, 669
Sau3AI GATC 2 cut(s) 160, 213
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 65, 747
SduI GDGCHC 2 cut(s) 397, 735
SmiMI CAYNNNNRTG 1 cut(s) 707
Sse9I AATT 4 cut(s) 9, 362, 373, 402
SsiI CCGC 3 cut(s) 44, 351, 391
SspMI CTAG 2 cut(s) 198, 483
SstI GAGCTC 1 cut(s) 735
StyD4I CCNGG 2 cut(s) 63, 745
TaaI ACNGT 2 cut(s) 242, 524
TaqI TCGA 1 cut(s) 582
TasI AATT 4 cut(s) 9, 362, 373, 402
TatI WGTACW 1 cut(s) 25
TfiI GAWTC 3 cut(s) 194, 281, 342
Tru1I TTAA 4 cut(s) 144, 209, 459, 467
Tru9I TTAA 4 cut(s) 144, 209, 459, 467
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 527, 668
TspDTI ATGAA 2 cut(s) 89, 334
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 9
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 2 cut(s) 519, 582
XspI CTAG 2 cut(s) 198, 483
ZrmI AGTACT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.