Rh7CG200000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000560
Physical Location & Seq
Forward (+)
17779347 .. 17779529
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG200000.1

Sequence Viewer

Length: 183 bp
ATGTTAGCTTTAAAGAAGACTTCATTATCTGTGATGAAGACCTCACTGGCCGCGGGGGAAGCTTCAATAGCCGTGACCATGATAAAGACCTCATTGGCCGCGGCGGAAGTTTCAATAGCCAAGACCATGGTGAAGACCTCACCGGCCACTGTGAAGGAGGTGAGGTGGATGAAGGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.35

Weight (kDa)

10.0

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 53, 101
AciI CCGC 5 cut(s) 51, 53, 99, 101, 104
AcoI YGGCCR 3 cut(s) 48, 96, 144
AgsI TTSAA 2 cut(s) 66, 114
AluBI AGCT 2 cut(s) 8, 62
AluI AGCT 2 cut(s) 8, 62
AoxI GGCC 3 cut(s) 48, 96, 144
AsuHPI GGTGA 3 cut(s) 132, 142, 172
BbsI GAAGAC 3 cut(s) 23, 44, 140
BceAI ACGGC 1 cut(s) 56
BisI GCNGC 3 cut(s) 51, 99, 102
BlsI GCNGC 3 cut(s) 52, 100, 103
BpiI GAAGAC 3 cut(s) 23, 44, 140
BsaJI CCNNGG 3 cut(s) 51, 99, 126
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 51, 99, 126
BseGI GGATG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 51
Bsh1236I CGCG 2 cut(s) 53, 101
BshFI GGCC 3 cut(s) 50, 98, 146
BsiSI CCGG 1 cut(s) 143
BsnI GGCC 3 cut(s) 50, 98, 146
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 5 cut(s) 51, 53, 99, 101, 104
BspANI GGCC 3 cut(s) 50, 98, 146
BspFNI CGCG 2 cut(s) 53, 101
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 51, 99, 126
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 151
BstDSI CCRYGG 3 cut(s) 51, 99, 126
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 2 cut(s) 53, 101
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstUI CGCG 2 cut(s) 53, 101
BstV2I GAAGAC 3 cut(s) 23, 44, 140
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 3 cut(s) 50, 98, 146
BtgI CCRYGG 3 cut(s) 51, 99, 126
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 44, 147
Cfr10I RCCGGY 1 cut(s) 142
Cfr42I CCGCGG 2 cut(s) 54, 102
CviAII CATG 2 cut(s) 79, 127
CviJI RGCY 7 cut(s) 8, 50, 62, 71, 98, 119, 146
CviKI_1 RGCY 7 cut(s) 8, 50, 62, 71, 98, 119, 146
DraI TTTAAA 1 cut(s) 12
EaeI YGGCCR 3 cut(s) 48, 96, 144
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 82, 130
FaiI YATR 2 cut(s) 80, 128
FatI CATG 2 cut(s) 78, 126
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 51, 99, 102
Fsp4HI GCNGC 3 cut(s) 51, 99, 102
GluI GCNGC 3 cut(s) 51, 99, 102
HaeIII GGCC 3 cut(s) 50, 98, 146
HapII CCGG 1 cut(s) 143
Hin1II CATG 2 cut(s) 82, 130
HindIII AAGCTT 1 cut(s) 60
HpaII CCGG 1 cut(s) 143
HphI GGTGA 3 cut(s) 132, 142, 172
HpyAV CCTTC 2 cut(s) 148, 166
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
Hsp92II CATG 2 cut(s) 82, 130
KspI CCGCGG 2 cut(s) 54, 102
LpnPI CCDG 2 cut(s) 32, 156
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 3 cut(s) 28, 49, 145
MnlI CCTC 5 cut(s) 52, 100, 148, 151, 156
MseI TTAA 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 53, 101
MspI CCGG 1 cut(s) 143
MvnI CGCG 2 cut(s) 53, 101
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 2 cut(s) 82, 130
NmuCI GTSAC 1 cut(s) 73
PkrI GCNGC 3 cut(s) 52, 100, 103
SacII CCGCGG 2 cut(s) 54, 102
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 3 cut(s) 51, 99, 102
SetI ASST 7 cut(s) 10, 44, 64, 92, 140, 162, 167
Sfr303I CCGCGG 2 cut(s) 54, 102
SgeI CNNG 9 cut(s) 59, 64, 66, 85, 91, 112, 133, 139, 155
SgrBI CCGCGG 2 cut(s) 54, 102
SsiI CCGC 5 cut(s) 51, 53, 99, 101, 104
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 151
TauI GCSGC 3 cut(s) 53, 101, 104
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 2 cut(s) 51, 154
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 12, 50
TspRI CASTG 2 cut(s) 51, 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.