Rmu_sc0009027.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009027.1
OG0000560
Physical Location & Seq
Forward (+)
3119 .. 3718
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009027.1_g000003.1.cds

Sequence Viewer

Length: 600 bp
atgtactcagcattggccacttatggcctaactgaggaggaaagcgcgatgatgaaaatgttagaaaaggatctgtcttcagagtcatacctcatcactgaggattctagcatcgtcttaaaaatcagttatcaggcaatgatggagaattataaactggaagccaatactgataacttacctatttctgatgttgacctgacttacctccgcgcctaccataaacaacatccagccgctgagatttatggattcacgtccgccgagagcaaattactagataatttgtccaaatacctgcgggctcgtgcaattgagtggcaagcaaagacagaaaaggcattcaccaagctgacaactggagccattgaagaattgaaaaaagagcaagccagtctcaatcaacagttgaaggatgaagaaatggtagaaggtgctgccacgaacaatggtaagcaagacgattatggagacgagggtgatgaggaagtcgattatggggaagaagaagaacaaggtgactatgataatgaagctggaatcgactacgacataggatatgacacagcttttgatatggaaaccttatccccattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.53

Weight (kDa)

4.16

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 306
AccII CGCG 2 cut(s) 47, 213
AciI CCGC 4 cut(s) 211, 237, 261, 301
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 371, 379, 412
AjiI CACGTC 1 cut(s) 258
AluBI AGCT 3 cut(s) 352, 536, 569
AluI AGCT 3 cut(s) 352, 536, 569
Alw26I GTCTC 2 cut(s) 401, 465
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 2 cut(s) 15, 25
ApeKI GCWGC 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 554, 586
AspLEI GCGC 2 cut(s) 47, 215
AsuHPI GGTGA 3 cut(s) 337, 491, 530
BalI TGGCCA 1 cut(s) 17
BanII GRGCYC 1 cut(s) 307
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 401, 465
BfaI CTAG 2 cut(s) 108, 278
BfuAI ACCTGC 1 cut(s) 306
BisI GCNGC 2 cut(s) 237, 438
BlsI GCNGC 2 cut(s) 238, 439
BmgBI CACGTC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 364
BmsI GCATC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 162, 364, 393
Bse3DI GCAATG 1 cut(s) 144
BseGI GGATG 2 cut(s) 229, 421
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 4 cut(s) 21, 24, 90, 231
BseNI ACTGG 3 cut(s) 162, 364, 393
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 2 cut(s) 47, 213
BshFI GGCC 2 cut(s) 17, 27
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 401, 465
BsmBI CGTCTC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 2 cut(s) 17, 27
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 4 cut(s) 211, 237, 261, 301
BspANI GGCC 2 cut(s) 17, 27
BspCNI CTCAG 4 cut(s) 20, 25, 91, 232
BspFNI CGCG 2 cut(s) 47, 213
BspLI GGNNCC 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 144
BsrI ACTGG 3 cut(s) 162, 364, 393
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 303, 324, 390
BstDEI CTNAG 4 cut(s) 7, 33, 99, 240
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 229, 421
BstFNI CGCG 2 cut(s) 47, 213
BstHHI GCGC 2 cut(s) 47, 215
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 401, 465
BstMBI GATC 1 cut(s) 70
BstUI CGCG 2 cut(s) 47, 213
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 17, 27
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 229, 421
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 3 cut(s) 303, 324, 390
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 2 cut(s) 47, 215
Csp6I GTAC 1 cut(s) 4
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 7, 33, 99, 240
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 15
EciI GGCGGA 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 465
FauI CCCGC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 237, 438
FokI GGATG 2 cut(s) 216, 428
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 237, 438
FspBI CTAG 2 cut(s) 108, 278
GlaI GCGC 2 cut(s) 46, 214
GluI GCNGC 2 cut(s) 237, 438
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 2 cut(s) 17, 27
HhaI GCGC 2 cut(s) 47, 215
Hin6I GCGC 2 cut(s) 45, 213
HinP1I GCGC 2 cut(s) 45, 213
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 83, 104, 252, 540
HphI GGTGA 3 cut(s) 337, 491, 530
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 82, 190
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 406, 425
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 311
HpyF3I CTNAG 4 cut(s) 7, 33, 99, 240
HpySE526I ACGT 1 cut(s) 257
HspAI GCGC 2 cut(s) 45, 213
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 8 cut(s) 119, 143, 212, 246, 311, 345, 406, 522
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 108, 278
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 518
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 6 cut(s) 69, 383, 431, 515, 518, 521
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 17
MluCI AATT 5 cut(s) 148, 272, 283, 312, 374
MluNI TGGCCA 1 cut(s) 17
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 28, 31, 94, 101, 218, 469, 478
Mox20I TGGCCA 1 cut(s) 17
MscI TGGCCA 1 cut(s) 17
MseI TTAA 2 cut(s) 119, 598
Msp20I TGGCCA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 239
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 341
MvnI CGCG 2 cut(s) 47, 213
NdeII GATC 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 364
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 518
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 3 cut(s) 104, 252, 540
PkrI GCNGC 2 cut(s) 238, 439
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PsiI TTATAA 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 119, 598
SatI GCNGC 2 cut(s) 237, 438
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 307
SfaNI GCATC 1 cut(s) 120
Sse9I AATT 5 cut(s) 148, 272, 283, 312, 374
SsiI CCGC 4 cut(s) 211, 237, 261, 301
SspMI CTAG 2 cut(s) 108, 278
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 260
TaqI TCGA 2 cut(s) 492, 543
TasI AATT 5 cut(s) 148, 272, 283, 312, 374
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 3 cut(s) 104, 252, 540
Tru1I TTAA 2 cut(s) 119, 598
Tru9I TTAA 2 cut(s) 119, 598
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 3 cut(s) 68, 432, 546
TspRI CASTG 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 32
XspI CTAG 2 cut(s) 108, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.