Rmu_sc0008303.1_g000005

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008303.1
OG0000560
Physical Location & Seq
Reverse (-)
4073 .. 4773
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008303.1_g000005.1.cds

Sequence Viewer

Length: 636 bp
atggaacttgagaccatcggtgttcattttgaaaatgtccgtagcttcccaaagctaccccatctacggtttacagaaggaggggttaaggttttcaaacatcttaaccctccatttaagttggctgaattagaaacaatgaggaagtttcaccggaaacattcagcccttgcaatttatgggcttccaaggagtcaagactatattctcaatacaatagtagcaaattctgatgccgatcatgctctgatttggcagggtttccatagccgattcattacacctggtttaaaagctttgtatcaagcacatcgcaaaagaatccaaaagaaggatatagttgctcaaattccagtttcaaaagccgactttcatttccttagatgttttcatagaagtcactcagctgaggaaacctatggcataaagccagaagaggcccagcttgcaagggaacttgatggttatttagaaaagaaagactttgcgactgaagagcaagcgaaagccgatgccaaagctaaggatattgaacaacagaaggaagtgcaaaaggcggctatggataagacgccaaatggaaaagtccctaccataagagatgtattcaacattggccacttatggcctaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

211

Amino Acids

24.29

Weight (kDa)

9.3

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 2 cut(s) 226, 348
AcuI CTGAAG 1 cut(s) 513
AcyI GRCGYC 1 cut(s) 572
AfiI CCNNNNNNNGG 2 cut(s) 66, 331
AgsI TTSAA 5 cut(s) 32, 97, 360, 533, 610
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 6 cut(s) 45, 55, 296, 407, 445, 521
AluI AGCT 6 cut(s) 45, 55, 296, 407, 445, 521
Alw26I GTCTC 1 cut(s) 5
AoxI GGCC 3 cut(s) 438, 616, 626
ApoI RAATTY 2 cut(s) 226, 348
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 143
BalI TGGCCA 1 cut(s) 618
BbvCI CCTCAGC 1 cut(s) 408
BccI CCATC 3 cut(s) 23, 69, 455
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 5
BisI GCNGC 1 cut(s) 558
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 2 cut(s) 223, 502
Bpu10I CCTNAGC 2 cut(s) 408, 522
BpuEI CTTGAG 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 331
Bse1I ACTGG 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 188
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 2 cut(s) 66, 331
BseMII CTCAG 2 cut(s) 399, 417
BseNI ACTGG 1 cut(s) 353
BseYI CCCAGC 1 cut(s) 441
BshFI GGCC 3 cut(s) 440, 618, 628
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 2 cut(s) 66, 331
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 3 cut(s) 440, 618, 628
Bso31I GGTCTC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 1 cut(s) 557
BspANI GGCC 3 cut(s) 440, 618, 628
BspCNI CTCAG 2 cut(s) 400, 416
BspQI GCTCTTC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 572
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 429, 489
BstACI GRCGYC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 447, 501
BstDEI CTNAG 4 cut(s) 380, 403, 408, 522
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 242, 446
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BsuRI GGCC 3 cut(s) 440, 618, 628
BtgZI GCGATG 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 447, 501
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 1 cut(s) 580
CsiI ACCWGGT 1 cut(s) 283
CviAII CATG 1 cut(s) 242
DdeI CTNAG 4 cut(s) 380, 403, 408, 522
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DraI TTTAAA 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 429, 489
EarI CTCTTC 2 cut(s) 429, 489
Eco130I CCWWGG 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 5
Eco57I CTGAAG 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 1 cut(s) 245
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 572
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 558
Fsp4HI GCNGC 1 cut(s) 558
GluI GCNGC 1 cut(s) 558
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 3 cut(s) 440, 618, 628
HapII CCGG 1 cut(s) 154
HgaI GACGC 1 cut(s) 580
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 193, 273, 321
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 232, 249
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 3 cut(s) 71, 325, 535
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 173, 449, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 446
HpyF3I CTNAG 4 cut(s) 380, 403, 408, 522
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 489
LpnPI CCDG 7 cut(s) 167, 242, 270, 297, 366, 444, 455
LweI GCATC 2 cut(s) 223, 502
MabI ACCWGGT 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 446, 506
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 4 cut(s) 128, 174, 226, 348
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 5 cut(s) 74, 120, 135, 403, 430
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 4 cut(s) 87, 105, 117, 290
Msp20I TGGCCA 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 242, 446
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 273, 321
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 1 cut(s) 283
PspPI GGNCC 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 4 cut(s) 87, 105, 117, 290
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 285
SetI ASST 9 cut(s) 47, 57, 93, 286, 298, 409, 419, 447, 523
SexAI ACCWGGT 1 cut(s) 283
SfaNI GCATC 2 cut(s) 223, 502
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 4 cut(s) 128, 174, 226, 348
SsiI CCGC 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 69
TasI AATT 4 cut(s) 128, 174, 226, 348
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 2 cut(s) 273, 321
Tru1I TTAA 4 cut(s) 87, 105, 117, 290
Tru9I TTAA 4 cut(s) 87, 105, 117, 290
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 4 cut(s) 14, 265, 362, 380
TspGWI ACGGA 1 cut(s) 29
XapI RAATTY 2 cut(s) 226, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.