Rh7CG370600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000560
Physical Location & Seq
Reverse (-)
46573479 .. 46578328
4850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG370600.1

Sequence Viewer

Length: 375 bp
ATGGTTACAGACTGCAATGAGATTCAACAAGGAGCCATCTTTCATGCGGCCGAGGTTGAAAATTCACAACCCCAAGTTCAGAGTAAGAAATTTGAAATTGAAGATGAACTAGCAATGATTGATGTTGAAGATCAAGAGGGTGACAAGCACAATGAAGATTTTGTTGAGGGTCAGGTTTTCGAAGGAGGAGCAGAGTACAACAATCATGGGGTAGGTGAGATTGTCCTAGCCGAGGTCCGGTTGATCTTGGTCAAGGTTCGGCTCAATGGTGGGCCGTCAAAATTTAATTTGGGTGATATCACGTTTGGGGTGAAGCAAATTAAGTTTGTCCTAGCCGAGGTTCGGTTGATCATAGATTTAATTGTAGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.78

Weight (kDa)

4.43

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 3 cut(s) 61, 89, 281
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 4 cut(s) 232, 237, 337, 342
AgsI TTSAA 5 cut(s) 26, 59, 95, 101, 128
AoxI GGCC 2 cut(s) 48, 272
ApoI RAATTY 3 cut(s) 61, 89, 281
AspS9I GGNCC 2 cut(s) 235, 272
AsuHPI GGTGA 4 cut(s) 152, 227, 305, 322
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 235
BccI CCATC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 259
BclI TGATCA 1 cut(s) 348
BfaI CTAG 3 cut(s) 110, 227, 332
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 235, 272
BmiI GGNNCC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 51, 231, 336
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 237, 337, 342
Bse3DI GCAATG 2 cut(s) 22, 120
BseDI CCNNGG 3 cut(s) 51, 231, 336
BseLI CCNNNNNNNGG 4 cut(s) 232, 237, 337, 342
BseMI GCAATG 2 cut(s) 22, 120
BseRI GAGGAG 1 cut(s) 201
BseX3I CGGCCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 50, 274
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 238
BslI CCNNNNNNNGG 4 cut(s) 232, 237, 337, 342
BsnI GGCC 2 cut(s) 50, 274
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 3 cut(s) 130, 243, 348
BspACI CCGC 1 cut(s) 47
BspANI GGCC 2 cut(s) 50, 274
BspLI GGNNCC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 22, 120
BssECI CCNNGG 3 cut(s) 51, 231, 336
BssMI GATC 3 cut(s) 130, 243, 348
BstBI TTCGAA 1 cut(s) 180
BstENI CCTNNNNNAGG 2 cut(s) 230, 335
BstKTI GATC 3 cut(s) 133, 246, 351
BstMBI GATC 3 cut(s) 130, 243, 348
BstMCI CGRYCG 1 cut(s) 51
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 2 cut(s) 50, 274
Cfr13I GGNCC 2 cut(s) 235, 272
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 44, 206
CviJI RGCY 6 cut(s) 35, 50, 230, 262, 274, 335
CviKI_1 RGCY 6 cut(s) 35, 50, 230, 262, 274, 335
CviQI GTAC 1 cut(s) 196
DpnI GATC 3 cut(s) 132, 245, 350
DpnII GATC 3 cut(s) 130, 243, 348
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
EclXI CGGCCG 1 cut(s) 48
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 235
Eco52I CGGCCG 1 cut(s) 48
EcoNI CCTNNNNNAGG 2 cut(s) 230, 335
EcoRV GATATC 1 cut(s) 298
FaeI CATG 2 cut(s) 47, 209
FaiI YATR 3 cut(s) 45, 207, 353
FatI CATG 2 cut(s) 43, 205
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 3 cut(s) 110, 227, 332
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 50, 274
HapII CCGG 1 cut(s) 238
Hin1II CATG 2 cut(s) 47, 209
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 238
HphI GGTGA 4 cut(s) 152, 227, 305, 322
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 2 cut(s) 47, 209
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 130, 243, 348
LmnI GCTCC 2 cut(s) 32, 188
LpnPI CCDG 2 cut(s) 158, 251
MaeI CTAG 3 cut(s) 110, 227, 332
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 4, 140
MalI GATC 3 cut(s) 132, 245, 350
MboI GATC 3 cut(s) 130, 243, 348
MboII GAAGA 3 cut(s) 113, 140, 167
MluCI AATT 8 cut(s) 61, 89, 96, 281, 286, 318, 360, 369
MnlI CCTC 6 cut(s) 46, 130, 160, 179, 226, 331
MseI TTAA 4 cut(s) 285, 321, 359, 373
MspI CCGG 1 cut(s) 238
NdeII GATC 3 cut(s) 130, 243, 348
NlaIII CATG 2 cut(s) 47, 209
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 3 cut(s) 76, 256, 361
NmuCI GTSAC 1 cut(s) 140
NspV TTCGAA 1 cut(s) 180
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 235, 272
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 4 cut(s) 285, 321, 359, 373
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 3 cut(s) 130, 243, 348
Sau96I GGNCC 2 cut(s) 235, 272
SetI ASST 7 cut(s) 57, 177, 217, 237, 258, 305, 342
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 235
Sse9I AATT 8 cut(s) 61, 89, 96, 281, 286, 318, 360, 369
SsiI CCGC 1 cut(s) 47
SspMI CTAG 3 cut(s) 110, 227, 332
TaiI ACGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 180
TasI AATT 8 cut(s) 61, 89, 96, 281, 286, 318, 360, 369
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 4 cut(s) 285, 321, 359, 373
Tru9I TTAA 4 cut(s) 285, 321, 359, 373
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 32, 120, 168
VpaK11BI GGWCC 1 cut(s) 235
XagI CCTNNNNNAGG 2 cut(s) 230, 335
XapI RAATTY 3 cut(s) 61, 89, 281
XspI CTAG 3 cut(s) 110, 227, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.