Rroxscaffold_5G00343980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000560
Physical Location & Seq
Reverse (-)
13870767 .. 13871078
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343980.1

Sequence Viewer

Length: 312 bp
ATGGTAGAAGGTGCTGCCACGAATAATGGTAAGCAAGACGATTTTGGAGACGAGGGTGATGAGGAAGTCGATTATGGGGAAGAAGAGGAACAAGGTGACTATGATAATGAAGTCGGAATCGAATACAAAATAGGAGATGACATAGCTTTTGACATGGAAACCTTATTCCCATTTTACAAGGGCGAGGCCGCCTTTGGAAAAGGAGAAGGTAATACAATAGACATCAACATGGTTTATGTCCTACCTTCGAACTCAAAGCTCAACCAAAGTCGGTCAAATGAACCGATCGGCGACTTTGTTGTTGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.39

Weight (kDa)

4.05

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AluBI AGCT 2 cut(s) 146, 259
AluI AGCT 2 cut(s) 146, 259
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AsuHPI GGTGA 2 cut(s) 68, 107
AsuII TTCGAA 1 cut(s) 248
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 42
BisI GCNGC 2 cut(s) 15, 189
BlsI GCNGC 2 cut(s) 16, 190
Bpu14I TTCGAA 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 2 cut(s) 285, 304
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 248
BssMI GATC 2 cut(s) 285, 304
Bst6I CTCTTC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 248
BstKTI GATC 2 cut(s) 288, 307
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 285, 304
BstMCI CGRYCG 1 cut(s) 288
BsuRI GGCC 1 cut(s) 188
CviAII CATG 2 cut(s) 154, 229
CviJI RGCY 3 cut(s) 146, 188, 259
CviKI_1 RGCY 3 cut(s) 146, 188, 259
DpnI GATC 2 cut(s) 287, 306
DpnII GATC 2 cut(s) 285, 304
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 157, 232
FaiI YATR 6 cut(s) 75, 102, 143, 155, 230, 237
FatI CATG 2 cut(s) 153, 228
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 15, 189
Fsp4HI GCNGC 2 cut(s) 15, 189
GluI GCNGC 2 cut(s) 15, 189
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 2 cut(s) 157, 232
HinfI GANTC 1 cut(s) 117
HphI GGTGA 2 cut(s) 68, 107
Hpy188I TCNGA 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 200, 255
Hsp92II CATG 2 cut(s) 157, 232
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 2 cut(s) 285, 304
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 287, 306
MboI GATC 2 cut(s) 285, 304
MboII GAAGA 2 cut(s) 92, 95
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 4 cut(s) 46, 55, 79, 178
MslI CAYNNNNRTG 1 cut(s) 227
NdeII GATC 2 cut(s) 285, 304
NlaIII CATG 2 cut(s) 157, 232
NmuCI GTSAC 1 cut(s) 95
NspV TTCGAA 1 cut(s) 248
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 16, 190
Ple19I CGATCG 1 cut(s) 288
PvuI CGATCG 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 2 cut(s) 15, 189
Sau3AI GATC 2 cut(s) 285, 304
SetI ASST 7 cut(s) 13, 97, 148, 164, 211, 247, 261
SfuI TTCGAA 1 cut(s) 248
SgeI CNNG 8 cut(s) 31, 47, 64, 104, 166, 190, 196, 241
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 1 cut(s) 189
TaqI TCGA 3 cut(s) 69, 120, 248
TaqII GACCGA 1 cut(s) 261
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 117
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 123, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.