RLG00000030152

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000560
Physical Location & Seq
Forward (+)
56509477 .. 56510202
726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030152

Sequence Viewer

Length: 342 bp
ATGTTCCAGGCAGTGTGGGAAAGTTCATCTCCAACAGTGTGCACACCGGAGGATAGATCAGCCCTTCCAGTGTCTGAGGAAGATCTATTGTATTTAACGGAGTACCACCGGCGCTATTCGGCTGAGAAGTTATATGGCCTTACTAAGGAAGAGGAAGAACTGGCAGATGCATTCGATCGGTACATCTTCCAGAAGAAGAGTGAGGCAGGGATAAAAGCTACAGATAATTCTCAATCTGAGCAGCGGGAGATTGAGTATGCAGCCAAAGTAAGCAAGGAAGACTCTGATTTTGAGTTGAGTGATGGGCCAGAAGATATGGTTACAGATTGCAATGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.98

Weight (kDa)

4.25

Isoelectric Point (pI)

74.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000560)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21400 FvH4_1g29793 FvH4_2g35581 FvH4_4g18554 FvH4_6g21671
pyrus_communis pycom11g14070
rosa_chinensis RchiOBHm_Chr6g0263201
rosa_laevigata RLG00000001861 RLG00000002050 RLG00000018783 RLG00000022649 RLG00000030152
rosa_multiflora Rmu_co8107100.1_g000001 Rmu_sc0000805.1_g000009 Rmu_sc0001347.1_g000002 Rmu_sc0001896.1_g000004 Rmu_sc0002170.1_g000040 Rmu_sc0002413.1_g000005 Rmu_sc0002489.1_g000053 Rmu_sc0002942.1_g000015 Rmu_sc0003071.1_g000022 Rmu_sc0003623.1_g000021 Rmu_sc0004063.1_g000005 Rmu_sc0004574.1_g000014 Rmu_sc0004723.1_g000009 Rmu_sc0005177.1_g000013 Rmu_sc0005994.1_g000011 Rmu_sc0006163.1_g000006 Rmu_sc0006583.1_g000008 Rmu_sc0008303.1_g000005 Rmu_sc0009027.1_g000002 Rmu_sc0009027.1_g000003 Rmu_sc0011790.1_g000009 Rmu_sc0011833.1_g000005 Rmu_sc0013493.1_g000006 Rmu_sc0016701.1_g000002 Rmu_sc0022033.1_g000001 Rmu_sc0022185.1_g000001 Rmu_sc0027245.1_g000005 Rmu_sc0030292.1_g000002 Rmu_ssc0000242.1_g000003
rosa_roxburghii Rroxscaffold_1G00015200 Rroxscaffold_1G00059290 Rroxscaffold_2G00079850 Rroxscaffold_2G00079860 Rroxscaffold_2G00107520 Rroxscaffold_2G00123420 Rroxscaffold_2G00123430 Rroxscaffold_3G00265790 Rroxscaffold_5G00335960 Rroxscaffold_5G00338270 Rroxscaffold_5G00343980 Rroxscaffold_5G00343990
rosa_samantha Rh1AG036500 Rh1DG429900 Rh2AG172600 Rh2AG610900 Rh2BG180200 Rh2BG180300 Rh2BG340600 Rh2BG400300 Rh2BG468400 Rh2BG478200 Rh2BG612500 Rh2BG612600 Rh3BG290000 Rh3BG290100 Rh3BG345200 Rh3BG345300 Rh3BG359800 Rh3CG291300 Rh4CG156300 Rh4CG264600 Rh5AG430300 Rh5BG185400 Rh6DG198700 Rh7CG199900 Rh7CG200000 Rh7CG370300 Rh7CG370600 Rh7CG395500 Rh7DG405800 Rh7DG405900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 244
AfaI GTAC 2 cut(s) 104, 182
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 74
AoxI GGCC 2 cut(s) 136, 305
ApaLI GTGCAC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 241, 260
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 253, 272
BccI CCATC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 82
BisI GCNGC 2 cut(s) 242, 261
BlsI GCNGC 2 cut(s) 243, 262
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 2 cut(s) 68, 165
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 3 cut(s) 66, 114, 228
BseNI ACTGG 2 cut(s) 68, 165
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 2 cut(s) 253, 272
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 2 cut(s) 138, 307
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 47, 109
BslI CCNNNNNNNGG 1 cut(s) 145
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 2 cut(s) 138, 307
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 56, 82, 175
BspACI CCGC 1 cut(s) 244
BspANI GGCC 2 cut(s) 138, 307
BspCNI CTCAG 3 cut(s) 67, 115, 229
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 2 cut(s) 68, 165
BssAI RCCGGY 1 cut(s) 108
BssMI GATC 3 cut(s) 56, 82, 175
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 144, 191
BstDEI CTNAG 4 cut(s) 75, 123, 144, 237
BstENI CCTNNNNNAGG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 59, 85, 178
BstMBI GATC 3 cut(s) 56, 82, 175
BstMCI CGRYCG 1 cut(s) 178
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 253, 272
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 2 cut(s) 138, 307
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 42, 75
CaiI CAGNNNCTG 1 cut(s) 74
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 103, 181
CviJI RGCY 6 cut(s) 62, 122, 138, 218, 263, 307
CviKI_1 RGCY 6 cut(s) 62, 122, 138, 218, 263, 307
CviQI GTAC 2 cut(s) 103, 181
DdeI CTNAG 4 cut(s) 75, 123, 144, 237
DpnI GATC 3 cut(s) 58, 84, 177
DpnII GATC 3 cut(s) 56, 82, 175
Eam1104I CTCTTC 2 cut(s) 144, 191
EarI CTCTTC 2 cut(s) 144, 191
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 172
FaiI YATR 4 cut(s) 133, 135, 258, 317
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 242, 261
Fsp4HI GCNGC 2 cut(s) 242, 261
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 242, 261
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 138, 307
HapII CCGG 2 cut(s) 47, 109
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 281
HpaII CCGG 2 cut(s) 47, 109
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 3 cut(s) 76, 238, 286
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 42, 170, 260, 330
HpyF3I CTNAG 4 cut(s) 75, 123, 144, 237
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 3 cut(s) 56, 82, 175
LpnPI CCDG 8 cut(s) 20, 60, 81, 122, 146, 192, 203, 321
Lsp1109I GCAGC 2 cut(s) 253, 272
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 319
MalI GATC 3 cut(s) 58, 84, 177
MboI GATC 3 cut(s) 56, 82, 175
MboII GAAGA 8 cut(s) 92, 161, 167, 178, 205, 208, 290, 323
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 4 cut(s) 43, 70, 145, 196
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 2 cut(s) 47, 109
MspR9I CCNGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 8
NdeII GATC 3 cut(s) 56, 82, 175
NsiI ATGCAT 1 cut(s) 172
PctI GAATGC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 243, 262
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 82
PvuI CGATCG 1 cut(s) 178
RsaI GTAC 2 cut(s) 104, 182
RsaNI GTAC 2 cut(s) 103, 181
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 242, 261
Sau3AI GATC 3 cut(s) 56, 82, 175
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 44
SetI ASST 1 cut(s) 220
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 219
SgrAI CRCCGGYG 1 cut(s) 108
Sse9I AATT 1 cut(s) 226
SsiI CCGC 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 226
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 3 cut(s) 18, 42, 75
TseI GCWGC 2 cut(s) 241, 260
TspDTI ATGAA 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 3 cut(s) 18, 42, 75
VneI GTGCAC 1 cut(s) 40
XagI CCTNNNNNAGG 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.