FvH4_1g05560

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000064
Physical Location & Seq
Reverse (-)
2935401 .. 2937057
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05560.t1

Sequence Viewer

Length: 1524 bp
ATGGTGGAGCATGATGATGATATTGGTTTTTCTAGGTCGAATGAGGTGTCAATGAGTCTAGAAGACGAAGAAGCAGGAGCAGAAGATCAAGAGAGACATGTTAAAAGACGACGAATAACTGGCCAATTAGGATGCGAACAAAGAGAGATGAAGCTTCAGATTTCATGTCTTCCAACTGATGTTCTGTATTGTGTTCTTGATAAGTTGTTGGAGCTCGTCGATTATGTTCGTTTCGCGGCTGTTTGTAAGGAACTGCAGCAAGTTGCAAAACTCTACAATTGCACTAAGCAACGTTGGGTGAGTAAGCCTAAGCTACTTCCCATGCTCATGCTTGCCCCTAATGAATCCGATAATGATACAAAGCAAAGACTACTGTATAGCGTTTCAGAAAGAAAAATCTACAACAACATCAACATTCGTTTATCGATGCCTTACAATGAGAACCTTTGTGGCTCTAGCCAAGGTTGGTTGGCCTCGGCACTCCAATCAACCGGGGAATGGCCTGAAAATAGAAGATTCAAGCTCGTTCATGAAATAACTCTGCGAAACCCTTTCGGAAAAGCATCAGAGGTGATTCATCTTCCTCCCTATATGCATTGCATCCCAGAAATGTTCGAGCATGTTAAAGAATGGATCCCCAGAGTTATCTTGTCTGCTAACCCAGCTTTGCATCCGGAAAACTATTACGTGCTATTTGCATTATATAGACCATTGCCGCACCGCATACCATTGCCAAACGGCGTAGTACGACGACATATGAATGTTCATGATCCAACGTTAGCGCTATTGACGCACCGCATACCAAACGGCGTAGTACGACGAATTATAAATGTTTATAATCCAACGTTAGCGCTATTTAAAGGAGGACAAGAATCTTGGATCACGATCGACCGACTAGATCAACATTTCCTTAAGTTTGATGATGCTATATTTTATAGAAACAAAATCTGCTTGCTTCTTGAAAGCAGAAATAAGTTGGTAGGCTCCGGGATGCTAACCTTGGATGTTGATAGCATTAACCTTACACAGCCGAAGATACAGTATAGTGGTTTTAAACCAGAACCTGCTTGGAATATTTTCCATGCACGTTGTTGGGAGCAATATCTCGTGGAGTCAACAAACGGAGACCTATTGCTCGTTCAAAGATTTTATGAGTTTGAAGAAACCTCCTTTGGCGTTTGCAAGATCGTGTTCAACGAGGAAGACAAATCCCCCTTTCAGCTGGTTGAGGTAAAATGCATTGGGGATGATGCAATATTCTTAGGTCAGAGCCAATCCCAGTCTGTTTTAGCTTTAAGTATTCCTGGCTGCAAGCCGAACTGCATATACTATGCTACAGAAAGTGTTAGACGGGATGAGTATCCGAAAGATTATAGTGATATCTTAAAAAGCGAGATGGGTATTTTCAATTTAGGGGACAAGTCCAGAACTACACTAATCGCCTCTGATTCTATAAGTAACTGGAATTGGAACGAGATGAATATGCCGTTTTGGGTCCTGCCATCATTGGGTCGTAGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

508

Amino Acids

58.56

Weight (kDa)

6.15

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 125 - 470 4.7e-30 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 827, 837
Acc36I ACCTGC 1 cut(s) 1072
AccII CGCG 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 673
AciI CCGC 4 cut(s) 236, 716, 721, 796
AclI AACGTT 3 cut(s) 292, 776, 845
AclWI GGATC 4 cut(s) 628, 641, 764, 887
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 747, 816
AfeI AGCGCT 2 cut(s) 783, 852
AfiI CCNNNNNNNGG 2 cut(s) 498, 1508
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 6 cut(s) 520, 962, 1142, 1160, 1195, 1408
AjnI CCWGG 1 cut(s) 1303
AjuI GAANNNNNNNTTGG 2 cut(s) 1155, 1187
AluBI AGCT 7 cut(s) 154, 214, 313, 523, 665, 1222, 1292
AluI AGCT 7 cut(s) 154, 214, 313, 523, 665, 1222, 1292
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 88, 1119
AlwI GGATC 4 cut(s) 628, 641, 764, 887
AlwNI CAGNNNCTG 1 cut(s) 1064
Aor13HI TCCGGA 1 cut(s) 673
Aor51HI AGCGCT 2 cut(s) 783, 852
AoxI GGCC 3 cut(s) 121, 471, 500
ApeKI GCWGC 2 cut(s) 256, 1308
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
Asp700I GAANNNNTTC 1 cut(s) 1076
AspLEI GCGC 2 cut(s) 784, 853
AspS9I GGNCC 1 cut(s) 1495
AsuC2I CCSGG 2 cut(s) 493, 988
AsuHPI GGTGA 2 cut(s) 310, 583
AvaII GGWCC 1 cut(s) 1495
BalI TGGCCA 1 cut(s) 123
BamHI GGATCC 1 cut(s) 633
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 1106
BbsI GAAGAC 3 cut(s) 69, 161, 1209
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 268, 1295
BccI CCATC 2 cut(s) 1390, 1510
BceAI ACGGC 3 cut(s) 754, 823, 1471
BciT130I CCWGG 1 cut(s) 1305
BciVI GTATCC 1 cut(s) 1371
BcnI CCSGG 2 cut(s) 493, 988
BcoDI GTCTC 2 cut(s) 88, 1119
BfaI CTAG 4 cut(s) 33, 59, 456, 896
BfmI CTRYAG 2 cut(s) 254, 1335
BfoI RGCGCY 2 cut(s) 785, 854
BfrI CTTAAG 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 1072
BfuI GTATCC 1 cut(s) 1371
BisI GCNGC 4 cut(s) 237, 257, 716, 1309
BlsI GCNGC 4 cut(s) 238, 258, 717, 1310
Bme1390I CCNGG 3 cut(s) 493, 988, 1305
Bme18I GGWCC 1 cut(s) 1495
BmgT120I GGNCC 1 cut(s) 1495
BmiI GGNNCC 3 cut(s) 635, 985, 1496
BmrFI CCNGG 3 cut(s) 493, 988, 1305
BmrI ACTGGG 1 cut(s) 1273
BmsI GCATC 8 cut(s) 122, 417, 572, 609, 679, 913, 981, 1240
BmuI ACTGGG 1 cut(s) 1273
BpiI GAAGAC 3 cut(s) 69, 161, 1209
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 2 cut(s) 493, 988
Bsa29I ATCGAT 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 688
BsaBI GATNNNNATC 2 cut(s) 884, 1359
BsaI GGTCTC 1 cut(s) 1119
BsaJI CCNNGG 4 cut(s) 460, 474, 492, 999
BsaWI WCCGGW 1 cut(s) 673
Bsc4I CCNNNNNNNGG 2 cut(s) 498, 1508
Bse1I ACTGG 3 cut(s) 124, 1279, 1466
Bse3DI GCAATG 3 cut(s) 595, 710, 728
Bse8I GATNNNNATC 2 cut(s) 884, 1359
BseAI TCCGGA 1 cut(s) 673
BseBI CCWGG 1 cut(s) 1305
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 4 cut(s) 460, 474, 492, 999
BseGI GGATG 7 cut(s) 137, 600, 670, 996, 1009, 1252, 1360
BseJI GATNNNNATC 2 cut(s) 884, 1359
BseLI CCNNNNNNNGG 2 cut(s) 498, 1508
BseMI GCAATG 3 cut(s) 595, 710, 728
BseNI ACTGG 3 cut(s) 124, 1279, 1466
BseXI GCAGC 2 cut(s) 268, 1295
BseYI CCCAGC 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 2 cut(s) 888, 892
BshFI GGCC 3 cut(s) 123, 473, 502
BshVI ATCGAT 1 cut(s) 425
BsiEI CGRYCG 2 cut(s) 888, 892
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 3 cut(s) 492, 674, 987
BslFI GGGAC 1 cut(s) 1430
BslI CCNNNNNNNGG 2 cut(s) 498, 1508
BsmAI GTCTC 2 cut(s) 88, 1119
BsmFI GGGAC 1 cut(s) 1430
BsnI GGCC 3 cut(s) 123, 473, 502
Bso31I GGTCTC 1 cut(s) 1119
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 673
Bsp143I GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
BspACI CCGC 4 cut(s) 236, 716, 721, 796
BspANI GGCC 3 cut(s) 123, 473, 502
BspDI ATCGAT 1 cut(s) 425
BspEI TCCGGA 1 cut(s) 673
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 2 cut(s) 529, 766
BspLI GGNNCC 3 cut(s) 635, 985, 1496
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 1072
BspPI GGATC 4 cut(s) 628, 641, 764, 887
BspTI CTTAAG 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 1119
BsrDI GCAATG 3 cut(s) 595, 710, 728
BsrI ACTGG 3 cut(s) 124, 1279, 1466
BssECI CCNNGG 4 cut(s) 460, 474, 492, 999
BssMI GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
BssSI CACGAG 1 cut(s) 1106
BssT1I CCWWGG 2 cut(s) 460, 999
Bst2BI CACGAG 1 cut(s) 1106
Bst2UI CCWGG 1 cut(s) 1305
Bst4CI ACNGT 2 cut(s) 375, 1041
BstAFI CTTAAG 1 cut(s) 911
BstBAI YACGTR 1 cut(s) 688
BstC8I GCNNGC 3 cut(s) 333, 953, 1313
BstDEI CTNAG 3 cut(s) 285, 309, 1261
BstF5I GGATG 7 cut(s) 137, 600, 670, 996, 1009, 1252, 1360
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 2 cut(s) 785, 854
BstHHI GCGC 2 cut(s) 784, 853
BstKTI GATC 7 cut(s) 88, 636, 772, 882, 888, 901, 1188
BstMAI GTCTC 2 cut(s) 88, 1119
BstMBI GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
BstMCI CGRYCG 2 cut(s) 888, 892
BstMWI GCNNNNNNNGC 2 cut(s) 662, 790
BstNI CCWGG 1 cut(s) 1305
BstNSI RCATGY 2 cut(s) 101, 623
BstSCI CCNGG 3 cut(s) 491, 986, 1303
BstSFI CTRYAG 2 cut(s) 254, 1335
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 268, 1295
BstV2I GAAGAC 3 cut(s) 69, 161, 1209
BstX2I RGATCY 1 cut(s) 633
BstYI RGATCY 1 cut(s) 633
Bsu15I ATCGAT 1 cut(s) 425
BsuI GTATCC 1 cut(s) 1371
BsuRI GGCC 3 cut(s) 123, 473, 502
BsuTUI ATCGAT 1 cut(s) 425
BtsCI GGATG 7 cut(s) 137, 600, 670, 996, 1009, 1252, 1360
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 3 cut(s) 333, 953, 1313
CaiI CAGNNNCTG 1 cut(s) 1064
CciI TCATGA 2 cut(s) 529, 766
CfoI GCGC 2 cut(s) 784, 853
Cfr13I GGNCC 1 cut(s) 1495
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 1 cut(s) 799
Csp6I GTAC 2 cut(s) 746, 815
CviAII CATG 9 cut(s) 11, 98, 165, 322, 328, 530, 620, 767, 1082
CviQI GTAC 2 cut(s) 746, 815
DdeI CTNAG 3 cut(s) 285, 309, 1261
DpnI GATC 7 cut(s) 87, 635, 771, 881, 887, 900, 1187
DpnII GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
DraI TTTAAA 2 cut(s) 859, 1054
EaeI YGGCCR 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 460, 999
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 1119
Eco32I GATATC 1 cut(s) 1381
Eco47I GGWCC 1 cut(s) 1495
Eco47III AGCGCT 2 cut(s) 783, 852
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 1495
EcoRII CCWGG 1 cut(s) 1303
EcoRV GATATC 1 cut(s) 1381
EcoT14I CCWWGG 2 cut(s) 460, 999
EcoT22I ATGCAT 2 cut(s) 597, 1241
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 460, 999
FaeI CATG 9 cut(s) 14, 101, 168, 325, 331, 533, 623, 770, 1085
FaqI GGGAC 1 cut(s) 1430
FatI CATG 9 cut(s) 10, 97, 164, 321, 327, 529, 619, 766, 1081
FauNDI CATATG 1 cut(s) 756
Fnu4HI GCNGC 4 cut(s) 237, 257, 716, 1309
FokI GGATG 7 cut(s) 144, 587, 657, 1003, 1016, 1259, 1367
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 4 cut(s) 237, 257, 716, 1309
FspBI CTAG 4 cut(s) 33, 59, 456, 896
GlaI GCGC 2 cut(s) 783, 852
GluI GCNGC 4 cut(s) 237, 257, 716, 1309
GsaI CCCAGC 1 cut(s) 665
HaeII RGCGCY 2 cut(s) 785, 854
HaeIII GGCC 3 cut(s) 123, 473, 502
HapII CCGG 3 cut(s) 492, 674, 987
HgaI GACGC 1 cut(s) 799
HhaI GCGC 2 cut(s) 784, 853
Hin1II CATG 9 cut(s) 14, 101, 168, 325, 331, 533, 623, 770, 1085
Hin6I GCGC 2 cut(s) 782, 851
HinP1I GCGC 2 cut(s) 782, 851
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 7 cut(s) 55, 344, 516, 574, 872, 1112, 1448
HpaII CCGG 3 cut(s) 492, 674, 987
HphI GGTGA 2 cut(s) 310, 583
Hpy166II GTNNAC 1 cut(s) 1116
Hpy188I TCNGA 8 cut(s) 159, 349, 388, 557, 568, 1269, 1365, 1447
Hpy188III TCNNGA 9 cut(s) 59, 89, 197, 530, 674, 767, 883, 959, 1425
Hpy8I GTNNAC 1 cut(s) 1116
Hpy99I CGWCG 4 cut(s) 114, 221, 753, 822
HpyCH4III ACNGT 2 cut(s) 375, 1041
HpyCH4IV ACGT 5 cut(s) 292, 687, 776, 845, 1087
HpyF10VI GCNNNNNNNGC 2 cut(s) 662, 790
HpyF3I CTNAG 3 cut(s) 285, 309, 1261
HpySE526I ACGT 5 cut(s) 292, 687, 776, 845, 1087
Hsp92II CATG 9 cut(s) 14, 101, 168, 325, 331, 533, 623, 770, 1085
HspAI GCGC 2 cut(s) 782, 851
Kpn2I TCCGGA 1 cut(s) 673
Kzo9I GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
LmnI GCTCC 5 cut(s) 7, 77, 211, 989, 1096
Lsp1109I GCAGC 2 cut(s) 268, 1295
LweI GCATC 8 cut(s) 122, 417, 572, 609, 679, 913, 981, 1240
MaeI CTAG 4 cut(s) 33, 59, 456, 896
MaeII ACGT 5 cut(s) 292, 687, 776, 845, 1087
MaeIII GTNAC 1 cut(s) 1457
MalI GATC 7 cut(s) 87, 635, 771, 881, 887, 900, 1187
MboI GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
MboII GAAGA 9 cut(s) 74, 80, 95, 161, 525, 572, 1045, 1172, 1214
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 5 cut(s) 125, 277, 822, 1408, 1465
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 2 cut(s) 64, 1121
MmeI TCCRAC 4 cut(s) 189, 197, 797, 866
MnlI CCTC 9 cut(s) 37, 484, 562, 594, 857, 1177, 1192, 1222, 1453
Mox20I TGGCCA 1 cut(s) 123
Mph1103I ATGCAT 2 cut(s) 597, 1241
MroI TCCGGA 1 cut(s) 673
MroXI GAANNNNTTC 1 cut(s) 1076
MscI TGGCCA 1 cut(s) 123
MseI TTAA 8 cut(s) 102, 624, 858, 912, 1017, 1053, 1295, 1385
MslI CAYNNNNRTG 3 cut(s) 15, 326, 759
Msp20I TGGCCA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 1222
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 3 cut(s) 492, 674, 987
MspR9I CCNGG 3 cut(s) 493, 988, 1305
MunI CAATTG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 1305
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 662, 790
NciI CCSGG 2 cut(s) 493, 988
NdeI CATATG 1 cut(s) 756
NdeII GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
NlaIII CATG 9 cut(s) 14, 101, 168, 325, 331, 533, 623, 770, 1085
NlaIV GGNNCC 3 cut(s) 635, 985, 1496
NmeAIII GCCGAG 1 cut(s) 455
NsiI ATGCAT 2 cut(s) 597, 1241
NspI RCATGY 2 cut(s) 101, 623
PagI TCATGA 2 cut(s) 529, 766
PciI ACATGT 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 1194
PdmI GAANNNNTTC 1 cut(s) 1076
PfeI GAWTC 5 cut(s) 344, 516, 574, 872, 1448
PfoI TCCNGGA 1 cut(s) 986
PkrI GCNGC 4 cut(s) 238, 258, 717, 1310
Ple19I CGATCG 1 cut(s) 888
PleI GAGTC 2 cut(s) 63, 1120
PpsI GAGTC 2 cut(s) 63, 1120
Ppu21I YACGTR 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 1495
PscI ACATGT 1 cut(s) 97
PsiI TTATAA 2 cut(s) 827, 837
Psp124BI GAGCTC 1 cut(s) 216
Psp1406I AACGTT 3 cut(s) 292, 776, 845
Psp5II RGGWCCY 1 cut(s) 1495
Psp6I CCWGG 1 cut(s) 1303
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 1 cut(s) 1303
PspN4I GGNNCC 3 cut(s) 635, 985, 1496
PspPI GGNCC 1 cut(s) 1495
PspPPI RGGWCCY 1 cut(s) 1495
PsrI GAACNNNNNNTAC 2 cut(s) 1310, 1342
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 1064
PsuI RGATCY 1 cut(s) 633
PvuI CGATCG 1 cut(s) 888
PvuII CAGCTG 1 cut(s) 1222
RsaI GTAC 2 cut(s) 747, 816
RsaNI GTAC 2 cut(s) 746, 815
RseI CAYNNNNRTG 3 cut(s) 15, 326, 759
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 8 cut(s) 102, 624, 858, 912, 1017, 1053, 1295, 1385
SatI GCNGC 4 cut(s) 237, 257, 716, 1309
Sau3AI GATC 7 cut(s) 85, 633, 769, 879, 885, 898, 1185
Sau96I GGNCC 1 cut(s) 1495
SchI GAGTC 2 cut(s) 64, 1121
ScrFI CCNGG 3 cut(s) 493, 988, 1305
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 8 cut(s) 122, 417, 572, 609, 679, 913, 981, 1240
SfcI CTRYAG 2 cut(s) 254, 1335
SinI GGWCC 1 cut(s) 1495
SmiMI CAYNNNNRTG 3 cut(s) 15, 326, 759
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 5 cut(s) 125, 277, 822, 1408, 1465
SsiI CCGC 4 cut(s) 236, 716, 721, 796
SspI AATATT 2 cut(s) 1075, 1257
SspMI CTAG 4 cut(s) 33, 59, 456, 896
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 3 cut(s) 491, 986, 1303
StyI CCWWGG 2 cut(s) 460, 999
TaaI ACNGT 2 cut(s) 375, 1041
TaiI ACGT 5 cut(s) 295, 690, 779, 848, 1090
TaqI TCGA 5 cut(s) 38, 219, 425, 615, 888
TaqII GACCGA 1 cut(s) 906
TasI AATT 5 cut(s) 125, 277, 822, 1408, 1465
TauI GCSGC 2 cut(s) 239, 718
TfiI GAWTC 5 cut(s) 344, 516, 574, 872, 1448
Tru1I TTAA 8 cut(s) 102, 624, 858, 912, 1017, 1053, 1295, 1385
Tru9I TTAA 8 cut(s) 102, 624, 858, 912, 1017, 1053, 1295, 1385
TseI GCWGC 2 cut(s) 256, 1308
TspGWI ACGGA 1 cut(s) 1137
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 1495
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 2 cut(s) 101, 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 1076
XspI CTAG 4 cut(s) 33, 59, 456, 896
Zsp2I ATGCAT 2 cut(s) 597, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.