Rmu_sc0005742.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005742.1
Physical Location & Seq
Reverse (-)
26617 .. 27234
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005742.1_g000008.1.cds

Sequence Viewer

Length: 618 bp
atgttggctttcattagattggttaaagatacgacatggacttatgtggatgtaagtgttgataatgcccttgtaggctgcctgatgattgaagaagttgtcaacgttggaaataaagtttatgctgtgaatctttggagagaagtttcatcttttgatgttactactcggacatactcagatgtaaagttggttggacgcggcgcttttccagattctcatgctaccaagagatatatctttgaaggagaagacaataaattgttgatggtccaaaggtacatggagtatagcgaagacaaacgagtgacaaagaaatttagagtttttgagttgaattttcaaacgggtgaatggactaagaagaacaccttgggtggagttgctctctttgttggagataactcttcaatatgcgtgttggcttcaaaagtttccggatttcagtcaaattgcatatacttcaaccatgatagtgattatgtgggcggtggtggcgaatatgattttggtgtttataacgttgaagatcaaagcttcccaaaaacttacactaaccgcgttaagaagatcctgcagatgagttatccacgaccgaccttgtcttttccgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

205

Amino Acids

23.39

Weight (kDa)

6.74

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AccII CGCG 2 cut(s) 201, 561
AccIII TCCGGA 1 cut(s) 437
AciI CCGC 3 cut(s) 201, 489, 559
AclI AACGTT 2 cut(s) 105, 522
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 2 cut(s) 317, 337
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 8 cut(s) 92, 245, 337, 344, 411, 429, 466, 527
AjuI GAANNNNNNNTTGG 4 cut(s) 356, 388, 492, 524
AluBI AGCT 1 cut(s) 537
AluI AGCT 1 cut(s) 537
AlwI GGATC 1 cut(s) 565
Aor13HI TCCGGA 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 2 cut(s) 317, 337
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 271
BbsI GAAGAC 2 cut(s) 258, 303
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 575
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 2 cut(s) 79, 202
BlsI GCNGC 2 cut(s) 80, 203
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BpiI GAAGAC 2 cut(s) 258, 303
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BsaJI CCNNGG 1 cut(s) 372
BsaWI WCCGGW 1 cut(s) 437
BseAI TCCGGA 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 2 cut(s) 201, 561
Bsh1285I CGRYCG 1 cut(s) 596
BsiEI CGRYCG 1 cut(s) 596
BsiSI CCGG 1 cut(s) 438
Bsp13I TCCGGA 1 cut(s) 437
Bsp143I GATC 2 cut(s) 529, 570
BspACI CCGC 3 cut(s) 201, 489, 559
BspCNI CTCAG 1 cut(s) 191
BspEI TCCGGA 1 cut(s) 437
BspFNI CGCG 2 cut(s) 201, 561
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 1 cut(s) 565
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 529, 570
BssT1I CCWWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 178, 360
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 201, 561
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 532, 573
BstMBI GATC 2 cut(s) 529, 570
BstMCI CGRYCG 1 cut(s) 596
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 2 cut(s) 201, 561
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 258, 303
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BtsCI GGATG 1 cut(s) 55
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 280
CviAII CATG 4 cut(s) 36, 221, 283, 470
CviJI RGCY 4 cut(s) 8, 78, 425, 537
CviKI_1 RGCY 4 cut(s) 8, 78, 425, 537
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 178, 360
DpnI GATC 2 cut(s) 531, 572
DpnII GATC 2 cut(s) 529, 570
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 4 cut(s) 39, 224, 286, 473
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 4 cut(s) 35, 220, 282, 469
Fnu4HI GCNGC 2 cut(s) 79, 202
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 79, 202
GlaI GCGC 1 cut(s) 205
GluI GCNGC 2 cut(s) 79, 202
HaeII RGCGCY 1 cut(s) 207
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 206
Hin1II CATG 4 cut(s) 39, 224, 286, 473
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 2 cut(s) 130, 215
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 2 cut(s) 171, 181
Hpy188III TCNNGA 2 cut(s) 212, 438
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 2 cut(s) 105, 522
HpyCH4V TGCA 2 cut(s) 456, 577
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 2 cut(s) 178, 360
HpySE526I ACGT 2 cut(s) 105, 522
Hsp92II CATG 4 cut(s) 39, 224, 286, 473
HspAI GCGC 1 cut(s) 204
Kpn2I TCCGGA 1 cut(s) 437
Kzo9I GATC 2 cut(s) 529, 570
LpnPI CCDG 4 cut(s) 95, 225, 451, 587
Lsp1109I GCAGC 1 cut(s) 65
MaeII ACGT 2 cut(s) 105, 522
MaeIII GTNAC 2 cut(s) 160, 307
MalI GATC 2 cut(s) 531, 572
MboI GATC 2 cut(s) 529, 570
MboII GAAGA 7 cut(s) 104, 263, 308, 376, 399, 539, 580
MflI RGATCY 1 cut(s) 570
MluCI AATT 4 cut(s) 260, 317, 337, 451
MmeI TCCRAC 3 cut(s) 88, 175, 376
MroI TCCGGA 1 cut(s) 437
MseI TTAA 2 cut(s) 24, 564
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 1 cut(s) 438
MvnI CGCG 2 cut(s) 201, 561
MwoI GCNNNNNNNGC 1 cut(s) 495
NdeII GATC 2 cut(s) 529, 570
NlaIII CATG 4 cut(s) 39, 224, 286, 473
NmuCI GTSAC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 130, 215
PflFI GACNNNGTC 1 cut(s) 601
PkrI GCNGC 2 cut(s) 80, 203
PsiI TTATAA 1 cut(s) 519
Psp1406I AACGTT 2 cut(s) 105, 522
PspPI GGNCC 1 cut(s) 271
PstI CTGCAG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 570
PsyI GACNNNGTC 1 cut(s) 601
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 24, 564
SatI GCNGC 2 cut(s) 79, 202
Sau3AI GATC 2 cut(s) 529, 570
Sau96I GGNCC 1 cut(s) 271
SetI ASST 6 cut(s) 108, 281, 374, 525, 539, 602
SfcI CTRYAG 1 cut(s) 575
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 4 cut(s) 260, 317, 337, 451
SsiI CCGC 3 cut(s) 201, 489, 559
StyI CCWWGG 1 cut(s) 372
TaiI ACGT 2 cut(s) 108, 525
TaqII GACCGA 1 cut(s) 610
TasI AATT 4 cut(s) 260, 317, 337, 451
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 2 cut(s) 130, 215
Tru1I TTAA 2 cut(s) 24, 564
Tru9I TTAA 2 cut(s) 24, 564
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 600
Tth111I GACNNNGTC 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 317, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.