Rmu_sc0005742.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005742.1
OG0000064
Physical Location & Seq
Forward (+)
74377 .. 74925
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005742.1_g000015.1.cds

Sequence Viewer

Length: 549 bp
atgattgaagaagttgtcaacgttggaaataaagtttatgctgtgaatctttggagagaagtttcatcttttgatgttactactcggacatactcagatgtaaagttggttggacgcggcgcttttccagattctcatgctaccaagagatatatctttgaaggagaagacaataaattgttgatggtccaaaggtacatggagtatagcgaagacaaacgagtgacaaagaaatttagagtttttgagttgaattttcaaacgggtgaatggactgagaagaacaccttgggtggagttgctctctttgttggagataactcttcaatatgcgtgttggcttcaaaagtttccggatttcagtcaaattgcatatacttcaaccatgatagtgattatgtgggcggtggtggcgaatatgattttggtgtttataacgttgaagatcaaagcttcccaaaaacttacactaaccgcgttaggaagatcctgcagatgagttatccacgaccgatttgggttaagccgactttgtcttttccattgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295

Protein Analysis

182

Amino Acids

20.91

Weight (kDa)

6.74

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AccII CGCG 2 cut(s) 117, 477
AccIII TCCGGA 1 cut(s) 353
AciI CCGC 3 cut(s) 117, 405, 475
AclI AACGTT 2 cut(s) 21, 438
AclWI GGATC 1 cut(s) 481
AcsI RAATTY 2 cut(s) 233, 253
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 8 cut(s) 8, 161, 253, 260, 327, 345, 382, 443
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 408, 440
AluBI AGCT 1 cut(s) 453
AluI AGCT 1 cut(s) 453
AlwI GGATC 1 cut(s) 481
Aor13HI TCCGGA 1 cut(s) 353
ApoI RAATTY 2 cut(s) 233, 253
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 174, 219
BccI CCATC 1 cut(s) 178
BfmI CTRYAG 1 cut(s) 491
BfoI RGCGCY 1 cut(s) 123
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BpiI GAAGAC 2 cut(s) 174, 219
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 353
BseAI TCCGGA 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 108, 267
Bsh1236I CGCG 2 cut(s) 117, 477
Bsh1285I CGRYCG 1 cut(s) 512
BsiEI CGRYCG 1 cut(s) 512
BsiSI CCGG 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 353
Bsp143I GATC 2 cut(s) 445, 486
BspACI CCGC 3 cut(s) 117, 405, 475
BspCNI CTCAG 2 cut(s) 107, 268
BspEI TCCGGA 1 cut(s) 353
BspFNI CGCG 2 cut(s) 117, 477
BspMAI CTGCAG 1 cut(s) 495
BspPI GGATC 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 445, 486
BssT1I CCWWGG 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 94, 276
BstFNI CGCG 2 cut(s) 117, 477
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 448, 489
BstMBI GATC 2 cut(s) 445, 486
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 491
BstUI CGCG 2 cut(s) 117, 477
BstV2I GAAGAC 2 cut(s) 174, 219
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 137, 199, 386
CviJI RGCY 3 cut(s) 341, 453, 526
CviKI_1 RGCY 3 cut(s) 341, 453, 526
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 94, 276
DpnI GATC 2 cut(s) 447, 488
DpnII GATC 2 cut(s) 445, 486
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 140, 202, 389
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 3 cut(s) 136, 198, 385
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 118
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 122
Hin1II CATG 3 cut(s) 140, 202, 389
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 2 cut(s) 46, 131
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 87, 97
Hpy188III TCNNGA 2 cut(s) 128, 354
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 21, 438
HpyCH4V TGCA 2 cut(s) 372, 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 2 cut(s) 94, 276
HpySE526I ACGT 2 cut(s) 21, 438
Hsp92II CATG 3 cut(s) 140, 202, 389
HspAI GCGC 1 cut(s) 120
Kpn2I TCCGGA 1 cut(s) 353
Kzo9I GATC 2 cut(s) 445, 486
LpnPI CCDG 3 cut(s) 141, 367, 503
MaeII ACGT 2 cut(s) 21, 438
MaeIII GTNAC 2 cut(s) 76, 223
MalI GATC 2 cut(s) 447, 488
MboI GATC 2 cut(s) 445, 486
MboII GAAGA 7 cut(s) 20, 179, 224, 292, 315, 455, 496
MflI RGATCY 1 cut(s) 486
MluCI AATT 4 cut(s) 176, 233, 253, 367
MmeI TCCRAC 3 cut(s) 4, 91, 292
MroI TCCGGA 1 cut(s) 353
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 354
MvnI CGCG 2 cut(s) 117, 477
MwoI GCNNNNNNNGC 1 cut(s) 411
NdeII GATC 2 cut(s) 445, 486
NlaIII CATG 3 cut(s) 140, 202, 389
NmuCI GTSAC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 46, 131
PflFI GACNNNGTC 1 cut(s) 532
PkrI GCNGC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 435
Psp1406I AACGTT 2 cut(s) 21, 438
PspPI GGNCC 1 cut(s) 187
PstI CTGCAG 1 cut(s) 495
PsuI RGATCY 1 cut(s) 486
PsyI GACNNNGTC 1 cut(s) 532
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 2 cut(s) 445, 486
Sau96I GGNCC 1 cut(s) 187
SetI ASST 5 cut(s) 24, 197, 290, 441, 455
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 4 cut(s) 176, 233, 253, 367
SsiI CCGC 3 cut(s) 117, 405, 475
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 2 cut(s) 24, 441
TaqII GACCGA 1 cut(s) 526
TasI AATT 4 cut(s) 176, 233, 253, 367
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 46, 131
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 2 cut(s) 233, 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.