Rroxscaffold_5G00379650

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000064
Physical Location & Seq
Forward (+)
59929186 .. 59931332
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379650.1

Sequence Viewer

Length: 1062 bp
ATGCGGACGGAGCGAGAGCGACCAAAAACTATCGAGAAGCTTCCTTGGAGCGTTGACTTGAAGTTTGACCGTCGACTCGAGGAGGGGGGTACCTACGAGAAAACCCTCCGATGCCTAACGCTGGTGCAACCTACTTCCAATGCTCATGATCTCCCCCCCCCCCCCCCCAGCCGAACGAAACAAATGGTTTATAGCCTTTCTGAAGGAGAAACCTATACGAATGTTCAATTACCGGTGCCTTATGATAGGAGGTGCAGTGGCTCCAGCCATGGTTGGTTGGCCACAGCACATGAGAATTTCGCCATAATTCTTTTGAATCCTTTCAGAAAAGCAGAGGCCATTCATTTGCCTCCCTTGTCAACCTCACATAATTTCGAAGTTGAGTTGCAGAAGTTCCAGGATGAGTTGAAGAAGCGGTACGACTATTATGTCTATAAGGTTATATTATCAGCTGACCACCCGTCTTTGAATCCGCATAATTATGTGGTTGTGGCAATCTACGACATCCATTGCAGAAATGAAATTTATGCAGTTGGACTAGGGGGAATAATTGCGTCAGTTGATGTCAATAGTAGTAATGATCCTTCGCGGTCGCCAAAAGCAATTCCTCTTACACCCTTACGACCAATGGAACACCCTCTGTTCCCATACAAAGCAGATAAGGCATATCTTGTTGAATCAACCAATGGAGACTTGCTGCATGTTCGAAGGTTTTTGAAACGAAAGGAAAGTCTTGATCAAAAGCTGGGGGTTATCAATGTTGTGGTATACAAGTTGTTATTCAACGACAACGATGGGACCTTTGTGAGGCAGGATCTGGTAGACAGCATTGGGGATGATGCTTTGTTCTTGGGTGATAATCATTCAATATCTGTTTTGGCTTCTAATTTTCCTAGGTGCCAACCAAATTCCATTTACTTCACAAATGACATTATGAATGGTGGTATGGGTTTCTTCAATTTAGCAGACAAAACCGTCACACAACACTACCCTCTAAATCTCAGTGAGAGGTACATCCGATCCGCGATATGGATTGTGCCACCGTTCAATGGTCTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

353

Amino Acids

40.25

Weight (kDa)

7.2

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 63 - 168 3.8e-14 KIB1-4 beta-propeller
Beta-prop_KIB1-4 PF03478 169 - 320 1.6e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 428, 974
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 3 cut(s) 89, 235, 897
AccI GTMKAC 3 cut(s) 73, 768, 822
AccII CGCG 2 cut(s) 589, 1025
AciI CCGC 5 cut(s) 4, 415, 473, 589, 1023
AclWI GGATC 3 cut(s) 575, 822, 1014
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 3 cut(s) 295, 522, 907
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 3 cut(s) 91, 419, 1013
AfiI CCNNNNNNNGG 4 cut(s) 121, 807, 1029, 1049
AgeI ACCGGT 1 cut(s) 232
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 3 cut(s) 40, 452, 745
AluI AGCT 3 cut(s) 40, 452, 745
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 3 cut(s) 575, 822, 1014
AlwNI CAGNNNCTG 1 cut(s) 817
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 279, 336
ApeKI GCWGC 1 cut(s) 697
ApoI RAATTY 3 cut(s) 295, 522, 907
ArsI GACNNNNNNTTYG 4 cut(s) 47, 79, 715, 747
AsiGI ACCGGT 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 320
Asp718I GGTACC 1 cut(s) 89
AspA2I CCTAGG 1 cut(s) 893
AspS9I GGNCC 1 cut(s) 798
AsuHPI GGTGA 1 cut(s) 866
AsuII TTCGAA 2 cut(s) 375, 706
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 798
AvrII CCTAGG 1 cut(s) 893
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 3 cut(s) 89, 235, 897
BarI GAAGNNNNNNTAC 4 cut(s) 401, 433, 568, 600
BbsI GAAGAC 1 cut(s) 1046
BbvI GCAGC 1 cut(s) 684
BccI CCATC 1 cut(s) 788
BciT130I CCWGG 1 cut(s) 398
BclI TGATCA 1 cut(s) 736
BcoDI GTCTC 1 cut(s) 684
BfaI CTAG 3 cut(s) 539, 894, 1060
BisI GCNGC 1 cut(s) 698
BlnI CCTAGG 1 cut(s) 893
BlsI GCNGC 1 cut(s) 699
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 1 cut(s) 798
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 798
BmiI GGNNCC 5 cut(s) 91, 237, 262, 799, 899
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 2 cut(s) 101, 829
BpiI GAAGAC 1 cut(s) 1046
BpmI CTGGAG 1 cut(s) 247
Bpu14I TTCGAA 2 cut(s) 375, 706
BsaJI CCNNGG 3 cut(s) 44, 268, 893
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 807, 1029, 1049
Bse118I RCCGGY 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 44, 268, 893
BseGI GGATG 4 cut(s) 406, 504, 841, 1014
BseLI CCNNNNNNNGG 4 cut(s) 121, 807, 1029, 1049
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 1015
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 684
BseYI CCCAGC 2 cut(s) 167, 745
BsgI GTGCAG 1 cut(s) 274
Bsh1236I CGCG 2 cut(s) 589, 1025
Bsh1285I CGRYCG 1 cut(s) 593
BshFI GGCC 2 cut(s) 281, 338
BshNI GGYRCC 3 cut(s) 89, 235, 897
BshTI ACCGGT 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 593
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 4 cut(s) 121, 807, 1029, 1049
BsmAI GTCTC 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 2 cut(s) 281, 338
BsoBI CYCGRG 1 cut(s) 77
Bsp119I TTCGAA 2 cut(s) 375, 706
Bsp143I GATC 5 cut(s) 148, 580, 736, 814, 1019
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 5 cut(s) 4, 415, 473, 589, 1023
BspANI GGCC 2 cut(s) 281, 338
BspCNI CTCAG 1 cut(s) 1014
BspFNI CGCG 2 cut(s) 589, 1025
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 5 cut(s) 91, 237, 262, 799, 899
BspPI GGATC 3 cut(s) 575, 822, 1014
BspT104I TTCGAA 2 cut(s) 375, 706
BspT107I GGYRCC 3 cut(s) 89, 235, 897
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 44, 268, 893
BssMI GATC 5 cut(s) 148, 580, 736, 814, 1019
BssNAI GTATAC 1 cut(s) 769
BssT1I CCWWGG 3 cut(s) 44, 268, 893
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 71, 976, 1044
BstBI TTCGAA 2 cut(s) 375, 706
BstDEI CTNAG 1 cut(s) 1001
BstDSI CCRYGG 1 cut(s) 268
BstENI CCTNNNNNAGG 1 cut(s) 805
BstF5I GGATG 4 cut(s) 406, 504, 841, 1014
BstFNI CGCG 2 cut(s) 589, 1025
BstKTI GATC 5 cut(s) 151, 583, 739, 817, 1022
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 5 cut(s) 148, 580, 736, 814, 1019
BstMCI CGRYCG 1 cut(s) 593
BstMWI GCNNNNNNNGC 2 cut(s) 10, 662
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 396
BstUI CGCG 2 cut(s) 589, 1025
BstV1I GCAGC 1 cut(s) 684
BstV2I GAAGAC 1 cut(s) 1046
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZ17I GTATAC 1 cut(s) 769
BsuRI GGCC 2 cut(s) 281, 338
BtgI CCRYGG 1 cut(s) 268
BtsCI GGATG 4 cut(s) 406, 504, 841, 1014
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 262, 1009
CaiI CAGNNNCTG 1 cut(s) 817
CciI TCATGA 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 798
CseI GACGC 1 cut(s) 543
Csp6I GTAC 3 cut(s) 90, 418, 1012
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 4 cut(s) 146, 269, 290, 701
CviQI GTAC 3 cut(s) 90, 418, 1012
DdeI CTNAG 1 cut(s) 1001
DpnI GATC 5 cut(s) 150, 582, 738, 816, 1021
DpnII GATC 5 cut(s) 148, 580, 736, 814, 1019
DrdI GACNNNNNNGTC 2 cut(s) 428, 974
DriI GACNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 2 cut(s) 428, 974
EaeI YGGCCR 1 cut(s) 279
Eam1105I GACNNNNNGTC 1 cut(s) 460
Eco130I CCWWGG 3 cut(s) 44, 268, 893
Eco47I GGWCC 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 3 cut(s) 44, 268, 893
ErhI CCWWGG 3 cut(s) 44, 268, 893
FaeI CATG 4 cut(s) 149, 272, 293, 704
FaqI GGGAC 1 cut(s) 811
FatI CATG 4 cut(s) 145, 268, 289, 700
FbaI TGATCA 1 cut(s) 736
FblI GTMKAC 3 cut(s) 73, 768, 822
Fnu4HI GCNGC 1 cut(s) 698
FokI GGATG 4 cut(s) 413, 491, 848, 1001
Fsp4HI GCNGC 1 cut(s) 698
FspBI CTAG 3 cut(s) 539, 894, 1060
GluI GCNGC 1 cut(s) 698
GsaI CCCAGC 2 cut(s) 171, 749
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 2 cut(s) 281, 338
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 543
Hin1II CATG 4 cut(s) 149, 272, 293, 704
HincII GTYRAC 3 cut(s) 55, 74, 360
HindII GTYRAC 3 cut(s) 55, 74, 360
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 4 cut(s) 75, 316, 469, 677
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 866
Hpy166II GTNNAC 5 cut(s) 55, 74, 360, 769, 823
Hpy188I TCNGA 4 cut(s) 110, 202, 326, 1019
Hpy188III TCNNGA 3 cut(s) 34, 146, 734
Hpy8I GTNNAC 5 cut(s) 55, 74, 360, 769, 823
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 3 cut(s) 197, 594, 702
HpyCH4III ACNGT 3 cut(s) 71, 976, 1044
HpyCH4V TGCA 6 cut(s) 127, 255, 388, 513, 530, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 662
HpyF3I CTNAG 1 cut(s) 1001
Hsp92II CATG 4 cut(s) 149, 272, 293, 704
KpnI GGTACC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 5 cut(s) 148, 580, 736, 814, 1019
LmnI GCTCC 3 cut(s) 10, 48, 266
LpnPI CCDG 9 cut(s) 107, 181, 246, 277, 383, 410, 731, 797, 803
Lsp1109I GCAGC 1 cut(s) 684
LweI GCATC 2 cut(s) 101, 829
MaeI CTAG 3 cut(s) 539, 894, 1060
MaeIII GTNAC 1 cut(s) 976
MalI GATC 5 cut(s) 150, 582, 738, 816, 1021
MboI GATC 5 cut(s) 148, 580, 736, 814, 1019
MboII GAAGA 3 cut(s) 421, 946, 1046
MflI RGATCY 1 cut(s) 814
MlsI TGGCCA 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 514
Mox20I TGGCCA 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 2 cut(s) 589, 1025
MwoI GCNNNNNNNGC 2 cut(s) 10, 662
NcoI CCATGG 1 cut(s) 268
NdeII GATC 5 cut(s) 148, 580, 736, 814, 1019
NlaIII CATG 4 cut(s) 149, 272, 293, 704
NlaIV GGNNCC 5 cut(s) 91, 237, 262, 799, 899
NmuCI GTSAC 1 cut(s) 976
NspI RCATGY 1 cut(s) 704
NspV TTCGAA 2 cut(s) 375, 706
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 316, 469, 677
PfoI TCCNGGA 1 cut(s) 396
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 1 cut(s) 699
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 798
Psp5II RGGWCCY 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 396
PspFI CCCAGC 2 cut(s) 167, 745
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 5 cut(s) 91, 237, 262, 799, 899
PspPI GGNCC 1 cut(s) 798
PspPPI RGGWCCY 1 cut(s) 798
PspXI VCTCGAGB 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 91, 419, 1013
RsaNI GTAC 3 cut(s) 90, 418, 1012
RseI CAYNNNNRTG 1 cut(s) 480
SalI GTCGAC 1 cut(s) 72
SatI GCNGC 1 cut(s) 698
Sau3AI GATC 5 cut(s) 148, 580, 736, 814, 1019
Sau96I GGNCC 1 cut(s) 798
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 398
SfaNI GCATC 2 cut(s) 101, 829
Sfr274I CTCGAG 1 cut(s) 77
SfuI TTCGAA 2 cut(s) 375, 706
SinI GGWCC 1 cut(s) 798
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SsiI CCGC 5 cut(s) 4, 415, 473, 589, 1023
SspMI CTAG 3 cut(s) 539, 894, 1060
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 3 cut(s) 44, 268, 893
TaaI ACNGT 3 cut(s) 71, 976, 1044
TaqI TCGA 5 cut(s) 33, 73, 78, 375, 706
TfiI GAWTC 3 cut(s) 316, 469, 677
TscAI CASTG 2 cut(s) 262, 1009
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 1 cut(s) 697
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 3 cut(s) 332, 534, 950
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 2 cut(s) 262, 1009
VpaK11BI GGWCC 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 805
XapI RAATTY 3 cut(s) 295, 522, 907
XceI RCATGY 1 cut(s) 704
XhoI CTCGAG 1 cut(s) 77
XmaJI CCTAGG 1 cut(s) 893
XmiI GTMKAC 3 cut(s) 73, 768, 822
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 539, 894, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.