RLG00000033364

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
26366864 .. 26367920
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033364

Sequence Viewer

Length: 354 bp
ATGAGTCATGAGTGGGTTAGTGGATTGGATAAACGACATCATCAAGCTCTGAAGGAGATTGAGATCACCGCCTCCACAAAAAACTATCCAAATGGTGACCAAGCAACACCTGACGCCGGCACCCACATGAATCAATCCCGGTACAAGGAGACGATCCCATCTCCGGTCAAAACGCTTCTGCAGTTCTGCTTCACAAGAGGAGAAGCCAACCTCATCTTCCTGCTGCCGCTTCTGCTTGAGGAAGTGACAGCGGGGGATCCTATTGCAGTCAAAGCCACGAGGCCACCGCCGCACTGCAACACGAAACCTAGGGCTAGGTTACAGATTAGTTCTGTGTTTTCGGGAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.91

Weight (kDa)

8.66

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 5 cut(s) 69, 227, 251, 287, 290
AclWI GGATC 3 cut(s) 148, 251, 264
AcuI CTGAAG 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 116, 145, 163
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 2 cut(s) 47, 350
AluI AGCT 2 cut(s) 47, 350
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 3 cut(s) 148, 251, 264
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 223, 347
AspA2I CCTAGG 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 58, 107
AvrII CCTAGG 1 cut(s) 308
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 119
BauI CACGAG 1 cut(s) 277
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 166
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 2 cut(s) 309, 315
BfmI CTRYAG 1 cut(s) 179
BisI GCNGC 4 cut(s) 224, 227, 290, 348
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 4 cut(s) 225, 228, 291, 349
Bme1390I CCNGG 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 121, 258
BmrFI CCNGG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 145, 163
Bse118I RCCGGY 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 308
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 116, 145, 163
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 117, 139, 164
BslI CCNNNNNNNGG 3 cut(s) 116, 145, 163
BsmAI GTCTC 1 cut(s) 143
BsmBI CGTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 283
Bsp143I GATC 3 cut(s) 63, 153, 256
BspACI CCGC 5 cut(s) 69, 227, 251, 287, 290
BspANI GGCC 1 cut(s) 283
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 121, 258
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 3 cut(s) 148, 251, 264
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 3 cut(s) 63, 153, 256
BssNI GRCGYC 1 cut(s) 114
BssSI CACGAG 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 277
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 118
BstEII GGTNACC 1 cut(s) 95
BstKTI GATC 3 cut(s) 66, 156, 259
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 63, 153, 256
BstMWI GCNNNNNNNGC 3 cut(s) 232, 272, 289
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 118
CciI TCATGA 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 116
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 8, 127
CviJI RGCY 6 cut(s) 47, 206, 275, 283, 314, 350
CviKI_1 RGCY 6 cut(s) 47, 206, 275, 283, 314, 350
CviQI GTAC 1 cut(s) 142
DpnI GATC 3 cut(s) 65, 155, 258
DpnII GATC 3 cut(s) 63, 153, 256
Eco130I CCWWGG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 2 cut(s) 11, 130
FaiI YATR 2 cut(s) 9, 128
FatI CATG 2 cut(s) 7, 126
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 224, 227, 290, 348
Fsp4HI GCNGC 4 cut(s) 224, 227, 290, 348
FspBI CTAG 2 cut(s) 309, 315
GluI GCNGC 4 cut(s) 224, 227, 290, 348
HaeIII GGCC 1 cut(s) 283
HapII CCGG 3 cut(s) 117, 139, 164
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 2 cut(s) 11, 130
HinfI GANTC 2 cut(s) 4, 130
HpaII CCGG 3 cut(s) 117, 139, 164
HphI GGTGA 2 cut(s) 58, 107
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 8, 342
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 181, 266, 297
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 272, 289
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 2 cut(s) 11, 130
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 3 cut(s) 63, 153, 256
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 5 cut(s) 123, 130, 152, 177, 233
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 2 cut(s) 309, 315
MaeIII GTNAC 3 cut(s) 95, 244, 318
MalI GATC 3 cut(s) 65, 155, 258
MboI GATC 3 cut(s) 63, 153, 256
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 256
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 82, 191, 221, 232, 273
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 1 cut(s) 352
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 3 cut(s) 117, 139, 164
MspR9I CCNGG 1 cut(s) 139
MwoI GCNNNNNNNGC 3 cut(s) 232, 272, 289
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 139
NdeII GATC 3 cut(s) 63, 153, 256
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 2 cut(s) 11, 130
NlaIV GGNNCC 2 cut(s) 121, 258
NmuCI GTSAC 2 cut(s) 95, 244
PagI TCATGA 1 cut(s) 7
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 4 cut(s) 225, 228, 291, 349
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 121, 258
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 4 cut(s) 224, 227, 290, 348
Sau3AI GATC 3 cut(s) 63, 153, 256
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 139
SetI ASST 6 cut(s) 49, 112, 213, 310, 320, 352
SfcI CTRYAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 5 cut(s) 69, 227, 251, 287, 290
SspMI CTAG 2 cut(s) 309, 315
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 308
TauI GCSGC 2 cut(s) 229, 292
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 2 cut(s) 95, 244
TseI GCWGC 2 cut(s) 223, 347
Tsp45I GTSAC 2 cut(s) 95, 244
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 299
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 2 cut(s) 309, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.