MD13G1075200.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000064
Physical Location & Seq
Forward (+)
5315721 .. 5317157
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1075200.v1.1.491

Sequence Viewer

Length: 1266 bp
ATGGCGGACGACGAAACATCAATGAGTTTAAATGGGGATCCGTTGGCCCTGTGCCTAAGCCTGTCGTCTAACAAGAAGCATCGTCTTATGGTTAGGAGGAACCTGTCGATGTCGATATCAGAATGGGCAAGTCTTCCCGAAGCCCTTATCTTTCTAATTCTGGATAACTTGTTGGAACCCATTGATCATGTTCGCTTTGCTGCCGTTTGCAAGGAATGGTGTTATCTTTCCAAAGTCTATAATCTTGCAACGCAGCGGTGGCTTAAGGTACTTCCCATGCTCTTGATCCCTTCCCAATTAGAATCACAAACACAAGTAGAAACTACTGGCCCGACAACAAGAGCAGTATACAGTATTAATGAAGGGAAAGTTTACGAGAATGTTCGGTTACCTGTGCCTTACAGTAAGATATGTCGTGGCTCCAGCCATGGTTGGTTGGCCACAATTGATCTAGCGGACCAACCTATCAACATAACTCTGGTAAACCCTTTCACAAAAGAAACCATTCGTCTTCCTCCGTTAGAGTTCGAGGCCCAAGATATGAACCTATGGTTTCACCCCTACGAGAATTTCGTCCAAAAGGTTATATTATCCACCGATCCCAGTTTGAATCGTGACAATTATATGGTTGTTGCAATATACCGCGGAGTTTGCAGGTTGGCTTTCACTAAAGCGGGAGAAAAGTATTGGAGGTCCATCCATATAAACGTGACTGATGCTGTATTTTATAAAAACAAAATCTACGCAGTTGGGTATCGGTTGGGAAGCATCTTCTCAGTTGATGTTGAGAAGTCACATGCATATCGACGTCAACCATTCATTCAAATCGCACCTTTCATTGAAATCGGACAAGCTGATTGGGAATATCTTGTGGAATCAATCAAGGGAGACTTGTTGCAAGTTCGAATGTTTGCAATTAAGGATGGTCGTACTAAGGGGTCTTGGACCGAGAGTTTCTGCGTTTACAAGGTCGTATTTGACGATAGTAACAGAACCATCCGGAAGGTTGAGGTAAAAGACATTGGAGATGAGGCTTTGTTTCTCGGCGTCAACCATTCATTCTCTGTTCTGGCTTCGAATTTTGTTGGATGTAAGCCGAATTGCATATACCACACATGTAAGCTAAACCCAACTGGCATGAATATCTTCAATTTAGAGGACAAAAGCATCACCCGGATCCAGGTCCCTAGTCCTAATTGTGATCCGACCAGCCGTATACCACCTGCGATTTGGATTTTCCCAACCTTTAACGGACTTGGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

422

Amino Acids

47.99

Weight (kDa)

7.96

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 116 - 384 5.7e-51 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AarI CACCTGC 1 cut(s) 1231
AatII GACGTC 1 cut(s) 811
Acc36I ACCTGC 2 cut(s) 645, 1231
AccI GTMKAC 2 cut(s) 348, 1216
AccII CGCG 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 999
AciI CCGC 6 cut(s) 5, 256, 455, 643, 645, 674
AclWI GGATC 7 cut(s) 32, 45, 280, 593, 1171, 1184, 1196
AcoI YGGCCR 2 cut(s) 438, 1258
AcsI RAATTY 2 cut(s) 568, 1078
AcyI GRCGYC 2 cut(s) 808, 1047
AfaI GTAC 2 cut(s) 270, 931
AfiI CCNNNNNNNGG 1 cut(s) 1180
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 1115
AgsI TTSAA 4 cut(s) 610, 824, 842, 1150
AjnI CCWGG 1 cut(s) 1179
AluBI AGCT 2 cut(s) 854, 1123
AluI AGCT 2 cut(s) 854, 1123
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 7 cut(s) 32, 45, 280, 593, 1171, 1184, 1196
Aor13HI TCCGGA 1 cut(s) 999
AoxI GGCC 5 cut(s) 45, 328, 438, 531, 1258
ApeKI GCWGC 2 cut(s) 200, 253
ApoI RAATTY 2 cut(s) 568, 1078
AseI ATTAAT 1 cut(s) 357
Asp700I GAANNNNTTC 2 cut(s) 504, 1145
AspS9I GGNCC 7 cut(s) 46, 329, 457, 532, 693, 945, 1183
AsuC2I CCSGG 1 cut(s) 1174
AsuHPI GGTGA 2 cut(s) 548, 1162
AsuII TTCGAA 2 cut(s) 904, 1076
AvaII GGWCC 4 cut(s) 457, 693, 945, 1183
BalI TGGCCA 2 cut(s) 440, 1260
BamHI GGATCC 2 cut(s) 37, 1176
BbsI GAAGAC 2 cut(s) 125, 503
BbvI GCAGC 2 cut(s) 187, 265
BccI CCATC 3 cut(s) 704, 917, 1004
BceAI ACGGC 2 cut(s) 188, 1197
BciT130I CCWGG 1 cut(s) 1181
BclI TGATCA 1 cut(s) 184
BcnI CCSGG 1 cut(s) 1174
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 2 cut(s) 452, 1188
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 2 cut(s) 645, 1231
BisI GCNGC 2 cut(s) 201, 254
BlsI GCNGC 2 cut(s) 202, 255
Bme1390I CCNGG 2 cut(s) 1174, 1181
Bme18I GGWCC 4 cut(s) 457, 693, 945, 1183
BmgT120I GGNCC 7 cut(s) 46, 329, 457, 532, 693, 945, 1183
BmiI GGNNCC 6 cut(s) 39, 101, 177, 421, 1178, 1185
BmrFI CCNGG 2 cut(s) 1174, 1181
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 88, 706, 777, 1176
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 2 cut(s) 125, 503
BpmI CTGGAG 1 cut(s) 406
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 2 cut(s) 904, 1076
BpuMI CCSGG 1 cut(s) 1174
BsaHI GRCGYC 2 cut(s) 808, 1047
BsaJI CCNNGG 2 cut(s) 427, 643
BsaWI WCCGGW 1 cut(s) 999
Bsc4I CCNNNNNNNGG 1 cut(s) 1180
Bse1I ACTGG 3 cut(s) 331, 603, 1138
BseAI TCCGGA 1 cut(s) 999
BseBI CCWGG 1 cut(s) 1181
BseDI CCNNGG 2 cut(s) 427, 643
BseGI GGATG 4 cut(s) 696, 928, 996, 1094
BseLI CCNNNNNNNGG 1 cut(s) 1180
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 3 cut(s) 331, 603, 1138
BseXI GCAGC 2 cut(s) 187, 265
Bsh1236I CGCG 1 cut(s) 645
BshFI GGCC 5 cut(s) 47, 330, 440, 533, 1260
BsiSI CCGG 2 cut(s) 1000, 1174
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 1 cut(s) 1180
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 1169
BsnI GGCC 5 cut(s) 47, 330, 440, 533, 1260
Bsp119I TTCGAA 2 cut(s) 904, 1076
Bsp13I TCCGGA 1 cut(s) 999
Bsp143I GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 6 cut(s) 5, 256, 455, 643, 645, 674
BspANI GGCC 5 cut(s) 47, 330, 440, 533, 1260
BspCNI CTCAG 1 cut(s) 788
BspEI TCCGGA 1 cut(s) 999
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 6 cut(s) 39, 101, 177, 421, 1178, 1185
BspMI ACCTGC 2 cut(s) 645, 1231
BspPI GGATC 7 cut(s) 32, 45, 280, 593, 1171, 1184, 1196
BspT104I TTCGAA 2 cut(s) 904, 1076
BspTI CTTAAG 1 cut(s) 263
BsrI ACTGG 3 cut(s) 331, 603, 1138
BssECI CCNNGG 2 cut(s) 427, 643
BssMI GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
BssNAI GTATAC 2 cut(s) 349, 1217
BssNI GRCGYC 2 cut(s) 808, 1047
BssT1I CCWWGG 1 cut(s) 427
Bst1107I GTATAC 2 cut(s) 349, 1217
Bst2UI CCWGG 1 cut(s) 1181
Bst4CI ACNGT 2 cut(s) 353, 404
BstACI GRCGYC 2 cut(s) 808, 1047
BstAFI CTTAAG 1 cut(s) 263
BstBI TTCGAA 2 cut(s) 904, 1076
BstDEI CTNAG 3 cut(s) 56, 775, 933
BstDSI CCRYGG 2 cut(s) 427, 643
BstEII GGTNACC 1 cut(s) 387
BstF5I GGATG 4 cut(s) 696, 928, 996, 1094
BstFNI CGCG 1 cut(s) 645
BstKTI GATC 7 cut(s) 40, 187, 288, 451, 601, 1179, 1204
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
BstMWI GCNNNNNNNGC 2 cut(s) 259, 651
BstNI CCWGG 1 cut(s) 1181
BstNSI RCATGY 2 cut(s) 800, 1119
BstPI GGTNACC 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 1172, 1179
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 187, 265
BstV2I GAAGAC 2 cut(s) 125, 503
BstX2I RGATCY 2 cut(s) 37, 1176
BstYI RGATCY 2 cut(s) 37, 1176
BstZ17I GTATAC 2 cut(s) 349, 1217
BsuRI GGCC 5 cut(s) 47, 330, 440, 533, 1260
BtgI CCRYGG 2 cut(s) 427, 643
BtsCI GGATG 4 cut(s) 696, 928, 996, 1094
BveI ACCTGC 2 cut(s) 645, 1231
Cfr13I GGNCC 7 cut(s) 46, 329, 457, 532, 693, 945, 1183
Cfr42I CCGCGG 1 cut(s) 646
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 2 cut(s) 269, 930
CviAII CATG 6 cut(s) 188, 277, 428, 797, 1116, 1138
CviQI GTAC 2 cut(s) 269, 930
DdeI CTNAG 3 cut(s) 56, 775, 933
DpnI GATC 7 cut(s) 39, 186, 287, 450, 600, 1178, 1203
DpnII GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 2 cut(s) 438, 1258
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 427
Eco32I GATATC 1 cut(s) 117
Eco47I GGWCC 4 cut(s) 457, 693, 945, 1183
Eco91I GGTNACC 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 1183
EcoO65I GGTNACC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 1179
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 427
EcoT22I ATGCAT 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 6 cut(s) 191, 280, 431, 800, 1119, 1141
FalI AAGNNNNNCTT 2 cut(s) 875, 907
FaqI GGGAC 1 cut(s) 1169
FatI CATG 6 cut(s) 187, 276, 427, 796, 1115, 1137
FauI CCCGC 1 cut(s) 667
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 2 cut(s) 348, 1216
Fnu4HI GCNGC 2 cut(s) 201, 254
FokI GGATG 4 cut(s) 683, 935, 983, 1101
Fsp4HI GCNGC 2 cut(s) 201, 254
FspBI CTAG 2 cut(s) 452, 1188
GluI GCNGC 2 cut(s) 201, 254
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 5 cut(s) 47, 330, 440, 533, 1260
HapII CCGG 2 cut(s) 1000, 1174
HgaI GACGC 1 cut(s) 1036
Hin1I GRCGYC 2 cut(s) 808, 1047
Hin1II CATG 6 cut(s) 191, 280, 431, 800, 1119, 1141
HincII GTYRAC 2 cut(s) 812, 1051
HindII GTYRAC 2 cut(s) 812, 1051
HinfI GANTC 3 cut(s) 302, 610, 875
HpaII CCGG 2 cut(s) 1000, 1174
HphI GGTGA 2 cut(s) 548, 1162
Hpy166II GTNNAC 7 cut(s) 349, 373, 484, 812, 964, 1051, 1217
Hpy188I TCNGA 3 cut(s) 121, 848, 1206
Hpy188III TCNNGA 5 cut(s) 137, 161, 283, 614, 1000
Hpy8I GTNNAC 7 cut(s) 349, 373, 484, 812, 964, 1051, 1217
Hpy99I CGWCG 2 cut(s) 14, 810
HpyAV CCTTC 3 cut(s) 300, 356, 997
HpyCH4III ACNGT 2 cut(s) 353, 404
HpyCH4IV ACGT 2 cut(s) 708, 808
HpyCH4V TGCA 8 cut(s) 210, 248, 635, 654, 800, 898, 914, 1104
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 651
HpyF3I CTNAG 3 cut(s) 56, 775, 933
HpySE526I ACGT 2 cut(s) 708, 808
Hsp92I GRCGYC 2 cut(s) 808, 1047
Hsp92II CATG 6 cut(s) 191, 280, 431, 800, 1119, 1141
Kpn2I TCCGGA 1 cut(s) 999
Ksp22I TGATCA 1 cut(s) 184
KspI CCGCGG 1 cut(s) 646
Kzo9I GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 2 cut(s) 187, 265
LweI GCATC 4 cut(s) 88, 706, 777, 1176
MaeI CTAG 2 cut(s) 452, 1188
MaeII ACGT 2 cut(s) 708, 808
MaeIII GTNAC 5 cut(s) 387, 614, 709, 792, 986
MalI GATC 7 cut(s) 39, 186, 287, 450, 600, 1178, 1203
MboI GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
MboII GAAGA 4 cut(s) 125, 503, 763, 1138
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 2 cut(s) 37, 1176
MlsI TGGCCA 2 cut(s) 440, 1260
MluNI TGGCCA 2 cut(s) 440, 1260
MmeI TCCRAC 3 cut(s) 153, 1066, 1229
MnlI CCTC 7 cut(s) 90, 523, 525, 684, 1003, 1024, 1150
Mox20I TGGCCA 2 cut(s) 440, 1260
Mph1103I ATGCAT 1 cut(s) 802
MroI TCCGGA 1 cut(s) 999
MroXI GAANNNNTTC 2 cut(s) 504, 1145
MscI TGGCCA 2 cut(s) 440, 1260
MseI TTAA 5 cut(s) 29, 264, 357, 918, 1248
Msp20I TGGCCA 2 cut(s) 440, 1260
MspA1I CMGCKG 2 cut(s) 256, 645
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 2 cut(s) 1000, 1174
MspR9I CCNGG 2 cut(s) 1174, 1181
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 1181
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 259, 651
NciI CCSGG 1 cut(s) 1174
NcoI CCATGG 1 cut(s) 427
NdeII GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
NlaIII CATG 6 cut(s) 191, 280, 431, 800, 1119, 1141
NlaIV GGNNCC 6 cut(s) 39, 101, 177, 421, 1178, 1185
NmeAIII GCCGAG 1 cut(s) 1023
NmuCI GTSAC 3 cut(s) 614, 709, 792
NsiI ATGCAT 1 cut(s) 802
NspI RCATGY 2 cut(s) 800, 1119
NspV TTCGAA 2 cut(s) 904, 1076
PaqCI CACCTGC 1 cut(s) 1231
PciI ACATGT 1 cut(s) 1115
PcsI WCGNNNNNNNCGW 2 cut(s) 570, 978
PdmI GAANNNNTTC 2 cut(s) 504, 1145
PfeI GAWTC 3 cut(s) 302, 610, 875
PkrI GCNGC 2 cut(s) 202, 255
PpuMI RGGWCCY 1 cut(s) 1183
PscI ACATGT 1 cut(s) 1115
PshBI ATTAAT 1 cut(s) 357
PsiI TTATAA 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 1183
Psp6I CCWGG 1 cut(s) 1179
PspEI GGTNACC 1 cut(s) 387
PspGI CCWGG 1 cut(s) 1179
PspN4I GGNNCC 6 cut(s) 39, 101, 177, 421, 1178, 1185
PspPI GGNCC 7 cut(s) 46, 329, 457, 532, 693, 945, 1183
PspPPI RGGWCCY 1 cut(s) 1183
PsuI RGATCY 2 cut(s) 37, 1176
RsaI GTAC 2 cut(s) 270, 931
RsaNI GTAC 2 cut(s) 269, 930
SacII CCGCGG 1 cut(s) 646
SaqAI TTAA 5 cut(s) 29, 264, 357, 918, 1248
SatI GCNGC 2 cut(s) 201, 254
Sau3AI GATC 7 cut(s) 37, 184, 285, 448, 598, 1176, 1201
Sau96I GGNCC 7 cut(s) 46, 329, 457, 532, 693, 945, 1183
ScrFI CCNGG 2 cut(s) 1174, 1181
SfaNI GCATC 4 cut(s) 88, 706, 777, 1176
Sfr303I CCGCGG 1 cut(s) 646
SfuI TTCGAA 2 cut(s) 904, 1076
SgrBI CCGCGG 1 cut(s) 646
SinI GGWCC 4 cut(s) 457, 693, 945, 1183
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 6 cut(s) 5, 256, 455, 643, 645, 674
SspMI CTAG 2 cut(s) 452, 1188
StyD4I CCNGG 2 cut(s) 1172, 1179
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 353, 404
TaiI ACGT 2 cut(s) 711, 811
TaqI TCGA 6 cut(s) 107, 113, 528, 805, 904, 1076
TaqII GACCGA 1 cut(s) 962
TfiI GAWTC 3 cut(s) 302, 610, 875
Tru1I TTAA 5 cut(s) 29, 264, 357, 918, 1248
Tru9I TTAA 5 cut(s) 29, 264, 357, 918, 1248
TseFI GTSAC 3 cut(s) 614, 709, 792
TseI GCWGC 2 cut(s) 200, 253
Tsp45I GTSAC 3 cut(s) 614, 709, 792
TspDTI ATGAA 6 cut(s) 375, 557, 808, 826, 1047, 1154
TspGWI ACGGA 3 cut(s) 30, 507, 1266
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 4 cut(s) 457, 693, 945, 1183
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 2 cut(s) 568, 1078
XceI RCATGY 2 cut(s) 800, 1119
XcmI CCANNNNNNNNNTGG 1 cut(s) 1227
XmiI GTMKAC 2 cut(s) 348, 1216
XmnI GAANNNNTTC 2 cut(s) 504, 1145
XspI CTAG 2 cut(s) 452, 1188
ZraI GACGTC 1 cut(s) 809
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.