Protein of unknown function (DUF295)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_S8 | PF00082 | 114 - 577 | 1e-44 | Subtilase family |
| TPPII_Ig-like-1 | PF21223 | 624 - 730 | 3.1e-22 | Tripeptidyl-peptidase II, first Ig-like domain |
| TPPII_GBD | PF21316 | 750 - 834 | 2.1e-15 | TPPII, galactose-binding domain-like |
| TPPII | PF12580 | 876 - 1060 | 1.2e-59 | Tripeptidyl peptidase II |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 582, 3105 |
| AarI | CACCTGC | 1 cut(s) | 2659 |
| Acc36I | ACCTGC | 2 cut(s) | 768, 2659 |
| Acc65I | GGTACC | 1 cut(s) | 1382 |
| AccB1I | GGYRCC | 5 cut(s) | 302, 1372, 1382, 2294, 2599 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1271, 3842 |
| AccBSI | CCGCTC | 1 cut(s) | 725 |
| AccI | GTMKAC | 1 cut(s) | 2215 |
| AccII | CGCG | 2 cut(s) | 345, 2160 |
| AclI | AACGTT | 1 cut(s) | 3370 |
| AclWI | GGATC | 3 cut(s) | 3202, 3254, 3644 |
| AcoI | YGGCCR | 2 cut(s) | 340, 2065 |
| AcsI | RAATTY | 5 cut(s) | 701, 1946, 2676, 2849, 3629 |
| AcuI | CTGAAG | 5 cut(s) | 501, 2640, 2820, 3816, 3992 |
| AcvI | CACGTG | 3 cut(s) | 50, 574, 3938 |
| AcyI | GRCGYC | 2 cut(s) | 303, 348 |
| AdeI | CACNNNGTG | 1 cut(s) | 1379 |
| AfaI | GTAC | 7 cut(s) | 985, 1384, 1818, 2286, 2583, 3725, 4028 |
| AflII | CTTAAG | 1 cut(s) | 3473 |
| AflIII | ACRYGT | 2 cut(s) | 1057, 3935 |
| AhlI | ACTAGT | 1 cut(s) | 2578 |
| AjiI | CACGTC | 2 cut(s) | 59, 535 |
| AjnI | CCWGG | 7 cut(s) | 508, 1117, 1375, 1540, 2254, 3124, 3835 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2274, 2306 |
| Alw21I | GWGCWC | 4 cut(s) | 1126, 1364, 1444, 1540 |
| Alw26I | GTCTC | 9 cut(s) | 65, 118, 134, 1166, 1423, 1812, 2862, 3686, 4081 |
| AlwI | GGATC | 3 cut(s) | 3202, 3254, 3644 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1181, 3842 |
| Ama87I | CYCGRG | 3 cut(s) | 750, 1191, 1809 |
| AoxI | GGCC | 9 cut(s) | 340, 486, 815, 1349, 2065, 2161, 2257, 3079, 3151 |
| ApaI | GGGCCC | 1 cut(s) | 3155 |
| ApoI | RAATTY | 5 cut(s) | 701, 1946, 2676, 2849, 3629 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 804, 836, 1180, 1212 |
| AseI | ATTAAT | 1 cut(s) | 2559 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1980, 3337, 3384 |
| Asp718I | GGTACC | 1 cut(s) | 1382 |
| AspLEI | GCGC | 4 cut(s) | 305, 1278, 2160, 4107 |
| AsuC2I | CCSGG | 3 cut(s) | 383, 1464, 3275 |
| AsuHPI | GGTGA | 6 cut(s) | 493, 575, 1478, 2918, 3630, 4087 |
| AsuNHI | GCTAGC | 1 cut(s) | 3622 |
| AvaI | CYCGRG | 3 cut(s) | 750, 1191, 1809 |
| AvaII | GGWCC | 5 cut(s) | 379, 757, 1499, 1572, 3833 |
| AxyI | CCTNAGG | 1 cut(s) | 1889 |
| BaeGI | GKGCMC | 3 cut(s) | 927, 1375, 3155 |
| BanI | GGYRCC | 5 cut(s) | 302, 1372, 1382, 2294, 2599 |
| BanII | GRGCYC | 4 cut(s) | 751, 1098, 2038, 3155 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4010, 4042 |
| BauI | CACGAG | 2 cut(s) | 1875, 3699 |
| BbrPI | CACGTG | 3 cut(s) | 50, 574, 3938 |
| BbsI | GAAGAC | 2 cut(s) | 136, 3330 |
| Bbv12I | GWGCWC | 4 cut(s) | 1126, 1364, 1444, 1540 |
| BbvCI | CCTCAGC | 1 cut(s) | 1665 |
| BceAI | ACGGC | 2 cut(s) | 355, 2052 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2627, 2661 |
| BciT130I | CCWGG | 7 cut(s) | 510, 1119, 1377, 1542, 2256, 3126, 3837 |
| BclI | TGATCA | 2 cut(s) | 1230, 3703 |
| BcnI | CCSGG | 3 cut(s) | 383, 1464, 3275 |
| BcoDI | GTCTC | 9 cut(s) | 65, 118, 134, 1166, 1423, 1812, 2862, 3686, 4081 |
| BcuI | ACTAGT | 1 cut(s) | 2578 |
| BfaI | CTAG | 8 cut(s) | 431, 1491, 1899, 2579, 2630, 3623, 3642, 3737 |
| BfmI | CTRYAG | 2 cut(s) | 1725, 2481 |
| BfoI | RGCGCY | 2 cut(s) | 306, 1279 |
| BfrI | CTTAAG | 1 cut(s) | 3473 |
| BfuAI | ACCTGC | 2 cut(s) | 768, 2659 |
| BglII | AGATCT | 1 cut(s) | 1516 |
| BmcAI | AGTACT | 1 cut(s) | 2583 |
| Bme18I | GGWCC | 5 cut(s) | 379, 757, 1499, 1572, 3833 |
| BmeT110I | CYCGRG | 3 cut(s) | 750, 1191, 1809 |
| BmgBI | CACGTC | 2 cut(s) | 59, 535 |
| BmrI | ACTGGG | 3 cut(s) | 459, 1191, 1767 |
| BmtI | GCTAGC | 1 cut(s) | 3626 |
| BmuI | ACTGGG | 3 cut(s) | 459, 1191, 1767 |
| BoxI | GACNNNNGTC | 1 cut(s) | 57 |
| BpiI | GAAGAC | 2 cut(s) | 136, 3330 |
| BpmI | CTGGAG | 3 cut(s) | 393, 531, 1140 |
| Bpu10I | CCTNAGC | 3 cut(s) | 678, 1159, 1665 |
| BpuEI | CTTGAG | 2 cut(s) | 905, 2796 |
| BpuMI | CCSGG | 3 cut(s) | 383, 1464, 3275 |
| Bsa29I | ATCGAT | 1 cut(s) | 310 |
| BsaAI | YACGTR | 4 cut(s) | 50, 574, 1569, 3938 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1515 |
| BsaHI | GRCGYC | 2 cut(s) | 303, 348 |
| BsaI | GGTCTC | 2 cut(s) | 134, 3686 |
| BsaJI | CCNNGG | 6 cut(s) | 343, 1048, 1462, 1495, 2153, 3125 |
| BsaWI | WCCGGW | 1 cut(s) | 3073 |
| Bse118I | RCCGGY | 2 cut(s) | 1337, 1351 |
| Bse1I | ACTGG | 8 cut(s) | 168, 454, 610, 1186, 1762, 2603, 2690, 3747 |
| Bse21I | CCTNAGG | 1 cut(s) | 1889 |
| Bse3DI | GCAATG | 2 cut(s) | 195, 1434 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1515 |
| BseBI | CCWGG | 7 cut(s) | 510, 1119, 1377, 1542, 2256, 3126, 3837 |
| BseCI | ATCGAT | 1 cut(s) | 310 |
| BseDI | CCNNGG | 6 cut(s) | 343, 1048, 1462, 1495, 2153, 3125 |
| BseJI | GATNNNNATC | 1 cut(s) | 1515 |
| BseMI | GCAATG | 2 cut(s) | 195, 1434 |
| BseMII | CTCAG | 8 cut(s) | 1656, 2031, 2501, 2754, 2873, 3126, 3459, 3942 |
| BseNI | ACTGG | 8 cut(s) | 168, 454, 610, 1186, 1762, 2603, 2690, 3747 |
| BseRI | GAGGAG | 3 cut(s) | 53, 2006, 3677 |
| BseSI | GKGCMC | 3 cut(s) | 927, 1375, 3155 |
| BseX3I | CGGCCG | 1 cut(s) | 340 |
| BsgI | GTGCAG | 4 cut(s) | 430, 515, 1566, 2099 |
| Bsh1236I | CGCG | 2 cut(s) | 345, 2160 |
| Bsh1285I | CGRYCG | 3 cut(s) | 310, 343, 2833 |
| BshFI | GGCC | 9 cut(s) | 342, 488, 817, 1351, 2067, 2163, 2259, 3081, 3153 |
| BshNI | GGYRCC | 5 cut(s) | 302, 1372, 1382, 2294, 2599 |
| BshVI | ATCGAT | 1 cut(s) | 310 |
| BsiEI | CGRYCG | 3 cut(s) | 310, 343, 2833 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1126, 1364, 1444, 1540 |
| BsiHKCI | CYCGRG | 3 cut(s) | 750, 1191, 1809 |
| BsiSI | CCGG | 6 cut(s) | 383, 1338, 1352, 1464, 3074, 3275 |
| BslFI | GGGAC | 2 cut(s) | 665, 2361 |
| BsmAI | GTCTC | 9 cut(s) | 65, 118, 134, 1166, 1423, 1812, 2862, 3686, 4081 |
| BsmBI | CGTCTC | 2 cut(s) | 65, 118 |
| BsmFI | GGGAC | 2 cut(s) | 665, 2361 |
| BsnI | GGCC | 9 cut(s) | 342, 488, 817, 1351, 2067, 2163, 2259, 3081, 3153 |
| Bso31I | GGTCTC | 2 cut(s) | 134, 3686 |
| BsoBI | CYCGRG | 3 cut(s) | 750, 1191, 1809 |
| Bsp120I | GGGCCC | 1 cut(s) | 3151 |
| Bsp19I | CCATGG | 1 cut(s) | 1048 |
| BspANI | GGCC | 9 cut(s) | 342, 488, 817, 1351, 2067, 2163, 2259, 3081, 3153 |
| BspCNI | CTCAG | 8 cut(s) | 1657, 2032, 2500, 2753, 2872, 3125, 3458, 3941 |
| BspDI | ATCGAT | 1 cut(s) | 310 |
| BspFNI | CGCG | 2 cut(s) | 345, 2160 |
| BspHI | TCATGA | 4 cut(s) | 697, 1593, 1951, 3562 |
| BspMI | ACCTGC | 2 cut(s) | 768, 2659 |
| BspOI | GCTAGC | 1 cut(s) | 3626 |
| BspPI | GGATC | 3 cut(s) | 3202, 3254, 3644 |
| BspQI | GCTCTTC | 1 cut(s) | 2929 |
| BspT107I | GGYRCC | 5 cut(s) | 302, 1372, 1382, 2294, 2599 |
| BspTI | CTTAAG | 1 cut(s) | 3473 |
| BspTNI | GGTCTC | 2 cut(s) | 134, 3686 |
| BsrBI | CCGCTC | 1 cut(s) | 725 |
| BsrDI | GCAATG | 2 cut(s) | 195, 1434 |
| BsrFI | RCCGGY | 2 cut(s) | 1337, 1351 |
| BsrI | ACTGG | 8 cut(s) | 168, 454, 610, 1186, 1762, 2603, 2690, 3747 |
| BssAI | RCCGGY | 2 cut(s) | 1337, 1351 |
| BssECI | CCNNGG | 6 cut(s) | 343, 1048, 1462, 1495, 2153, 3125 |
| BssNI | GRCGYC | 2 cut(s) | 303, 348 |
| BssSI | CACGAG | 2 cut(s) | 1875, 3699 |
| BssT1I | CCWWGG | 2 cut(s) | 1048, 2153 |
| Bst2BI | CACGAG | 2 cut(s) | 1875, 3699 |
| Bst2UI | CCWGG | 7 cut(s) | 510, 1119, 1377, 1542, 2256, 3126, 3837 |
| Bst4CI | ACNGT | 6 cut(s) | 227, 500, 1316, 1366, 1930, 2206 |
| Bst6I | CTCTTC | 8 cut(s) | 547, 623, 2425, 2718, 2929, 3030, 3375, 4047 |
| BstACI | GRCGYC | 2 cut(s) | 303, 348 |
| BstAFI | CTTAAG | 1 cut(s) | 3473 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1433, 1553, 2654 |
| BstBAI | YACGTR | 4 cut(s) | 50, 574, 1569, 3938 |
| BstC8I | GCNNGC | 8 cut(s) | 792, 1156, 1339, 1353, 1906, 2427, 3507, 3624 |
| BstDSI | CCRYGG | 2 cut(s) | 343, 1048 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1892 |
| BstFNI | CGCG | 2 cut(s) | 345, 2160 |
| BstH2I | RGCGCY | 2 cut(s) | 306, 1279 |
| BstHHI | GCGC | 4 cut(s) | 305, 1278, 2160, 4107 |
| BstMAI | GTCTC | 9 cut(s) | 65, 118, 134, 1166, 1423, 1812, 2862, 3686, 4081 |
| BstMCI | CGRYCG | 3 cut(s) | 310, 343, 2833 |
| BstNI | CCWGG | 7 cut(s) | 510, 1119, 1377, 1542, 2256, 3126, 3837 |
| BstNSI | RCATGY | 4 cut(s) | 1061, 2983, 3509, 4103 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 57 |
| BstSFI | CTRYAG | 2 cut(s) | 1725, 2481 |
| BstSLI | GKGCMC | 3 cut(s) | 927, 1375, 3155 |
| BstUI | CGCG | 2 cut(s) | 345, 2160 |
| BstV2I | GAAGAC | 2 cut(s) | 136, 3330 |
| BstX2I | RGATCY | 3 cut(s) | 1516, 3194, 3259 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1827 |
| BstYI | RGATCY | 3 cut(s) | 1516, 3194, 3259 |
| BstZI | CGGCCG | 1 cut(s) | 340 |
| Bsu15I | ATCGAT | 1 cut(s) | 310 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1889 |
| BsuRI | GGCC | 9 cut(s) | 342, 488, 817, 1351, 2067, 2163, 2259, 3081, 3153 |
| BsuTUI | ATCGAT | 1 cut(s) | 310 |
| BtgI | CCRYGG | 2 cut(s) | 343, 1048 |
| BtrI | CACGTC | 2 cut(s) | 59, 535 |
| BtsI | GCAGTG | 1 cut(s) | 3500 |
| BtsIMutI | CAGTG | 9 cut(s) | 447, 1362, 1935, 2013, 2202, 2759, 3500, 3740, 3968 |
| BveI | ACCTGC | 2 cut(s) | 768, 2659 |
| Cac8I | GCNNGC | 8 cut(s) | 792, 1156, 1339, 1353, 1906, 2427, 3507, 3624 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1181, 3842 |
| CciI | TCATGA | 4 cut(s) | 697, 1593, 1951, 3562 |
| CfoI | GCGC | 4 cut(s) | 305, 1278, 2160, 4107 |
| Cfr10I | RCCGGY | 2 cut(s) | 1337, 1351 |
| Cfr42I | CCGCGG | 1 cut(s) | 346 |
| ClaI | ATCGAT | 1 cut(s) | 310 |
| CseI | GACGC | 1 cut(s) | 337 |
| CsiI | ACCWGGT | 1 cut(s) | 1375 |
| Csp6I | GTAC | 7 cut(s) | 984, 1383, 1817, 2285, 2582, 3724, 4027 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2287, 2322, 2511, 2546 |
| CviQI | GTAC | 7 cut(s) | 984, 1383, 1817, 2285, 2582, 3724, 4027 |
| DinI | GGCGCC | 1 cut(s) | 304 |
| DraI | TTTAAA | 1 cut(s) | 3877 |
| DraIII | CACNNNGTG | 1 cut(s) | 1379 |
| EaeI | YGGCCR | 2 cut(s) | 340, 2065 |
| EagI | CGGCCG | 1 cut(s) | 340 |
| Eam1104I | CTCTTC | 8 cut(s) | 547, 623, 2425, 2718, 2929, 3030, 3375, 4047 |
| EarI | CTCTTC | 8 cut(s) | 547, 623, 2425, 2718, 2929, 3030, 3375, 4047 |
| EclXI | CGGCCG | 1 cut(s) | 340 |
| Eco130I | CCWWGG | 2 cut(s) | 1048, 2153 |
| Eco24I | GRGCYC | 4 cut(s) | 751, 1098, 2038, 3155 |
| Eco31I | GGTCTC | 2 cut(s) | 134, 3686 |
| Eco47I | GGWCC | 5 cut(s) | 379, 757, 1499, 1572, 3833 |
| Eco52I | CGGCCG | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 5 cut(s) | 501, 2640, 2820, 3816, 3992 |
| Eco72I | CACGTG | 3 cut(s) | 50, 574, 3938 |
| Eco81I | CCTNAGG | 1 cut(s) | 1889 |
| Eco88I | CYCGRG | 3 cut(s) | 750, 1191, 1809 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1892 |
| EcoO109I | RGGNCCY | 2 cut(s) | 757, 815 |
| EcoRI | GAATTC | 1 cut(s) | 2676 |
| EcoRII | CCWGG | 7 cut(s) | 508, 1117, 1375, 1540, 2254, 3124, 3835 |
| EcoT14I | CCWWGG | 2 cut(s) | 1048, 2153 |
| EcoT22I | ATGCAT | 1 cut(s) | 4101 |
| EcoT38I | GRGCYC | 4 cut(s) | 751, 1098, 2038, 3155 |
| EgeI | GGCGCC | 1 cut(s) | 304 |
| EheI | GGCGCC | 1 cut(s) | 304 |
| ErhI | CCWWGG | 2 cut(s) | 1048, 2153 |
| Esp3I | CGTCTC | 2 cut(s) | 65, 118 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2274, 2306, 3513, 3545 |
| FaqI | GGGAC | 2 cut(s) | 665, 2361 |
| FauI | CCCGC | 1 cut(s) | 629 |
| FauNDI | CATATG | 3 cut(s) | 1414, 3235, 4081 |
| FbaI | TGATCA | 2 cut(s) | 1230, 3703 |
| FblI | GTMKAC | 1 cut(s) | 2215 |
| FriOI | GRGCYC | 4 cut(s) | 751, 1098, 2038, 3155 |
| FspBI | CTAG | 8 cut(s) | 431, 1491, 1899, 2579, 2630, 3623, 3642, 3737 |
| GlaI | GCGC | 4 cut(s) | 304, 1277, 2159, 4106 |
| GsuI | CTGGAG | 3 cut(s) | 393, 531, 1140 |
| HaeII | RGCGCY | 2 cut(s) | 306, 1279 |
| HaeIII | GGCC | 9 cut(s) | 342, 488, 817, 1351, 2067, 2163, 2259, 3081, 3153 |
| HapII | CCGG | 6 cut(s) | 383, 1338, 1352, 1464, 3074, 3275 |
| HgaI | GACGC | 1 cut(s) | 337 |
| HhaI | GCGC | 4 cut(s) | 305, 1278, 2160, 4107 |
| Hin1I | GRCGYC | 2 cut(s) | 303, 348 |
| Hin6I | GCGC | 4 cut(s) | 303, 1276, 2158, 4105 |
| HinP1I | GCGC | 4 cut(s) | 303, 1276, 2158, 4105 |
| HincII | GTYRAC | 5 cut(s) | 538, 1285, 1780, 2216, 2359 |
| HindII | GTYRAC | 5 cut(s) | 538, 1285, 1780, 2216, 2359 |
| HindIII | AAGCTT | 2 cut(s) | 2437, 2910 |
| HpaII | CCGG | 6 cut(s) | 383, 1338, 1352, 1464, 3074, 3275 |
| HphI | GGTGA | 6 cut(s) | 493, 575, 1478, 2918, 3630, 4087 |
| Hpy99I | CGWCG | 6 cut(s) | 17, 227, 320, 341, 353, 1587 |
| HpyCH4III | ACNGT | 6 cut(s) | 227, 500, 1316, 1366, 1930, 2206 |
| Hsp92I | GRCGYC | 2 cut(s) | 303, 348 |
| HspAI | GCGC | 4 cut(s) | 303, 1276, 2158, 4105 |
| KasI | GGCGCC | 1 cut(s) | 302 |
| KpnI | GGTACC | 1 cut(s) | 1386 |
| KroI | GCCGGC | 2 cut(s) | 1337, 1351 |
| KroNI | GCCGGC | 2 cut(s) | 1339, 1353 |
| Ksp22I | TGATCA | 2 cut(s) | 1230, 3703 |
| KspI | CCGCGG | 1 cut(s) | 346 |
| LguI | GCTCTTC | 1 cut(s) | 2929 |
| MabI | ACCWGGT | 1 cut(s) | 1375 |
| MaeI | CTAG | 8 cut(s) | 431, 1491, 1899, 2579, 2630, 3623, 3642, 3737 |
| MbiI | CCGCTC | 1 cut(s) | 725 |
| MflI | RGATCY | 3 cut(s) | 1516, 3194, 3259 |
| Mly113I | GGCGCC | 1 cut(s) | 303 |
| MlyI | GAGTC | 7 cut(s) | 47, 269, 874, 1183, 1690, 2354, 2864 |
| MmeI | TCCRAC | 2 cut(s) | 1603, 2741 |
| Mph1103I | ATGCAT | 1 cut(s) | 4101 |
| MroNI | GCCGGC | 2 cut(s) | 1337, 1351 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1980, 3337, 3384 |
| MslI | CAYNNNNRTG | 4 cut(s) | 696, 1221, 1956, 2121 |
| MspA1I | CMGCKG | 2 cut(s) | 345, 3007 |
| MspCI | CTTAAG | 1 cut(s) | 3473 |
| MspI | CCGG | 6 cut(s) | 383, 1338, 1352, 1464, 3074, 3275 |
| MvaI | CCWGG | 7 cut(s) | 510, 1119, 1377, 1542, 2256, 3126, 3837 |
| MvnI | CGCG | 2 cut(s) | 345, 2160 |
| NaeI | GCCGGC | 2 cut(s) | 1339, 1353 |
| NarI | GGCGCC | 1 cut(s) | 303 |
| NciI | CCSGG | 3 cut(s) | 383, 1464, 3275 |
| NcoI | CCATGG | 1 cut(s) | 1048 |
| NdeI | CATATG | 3 cut(s) | 1414, 3235, 4081 |
| NgoMIV | GCCGGC | 2 cut(s) | 1337, 1351 |
| NheI | GCTAGC | 1 cut(s) | 3622 |
| NmeAIII | GCCGAG | 2 cut(s) | 138, 1520 |
| NmuCI | GTSAC | 4 cut(s) | 45, 50, 2726, 4075 |
| NsiI | ATGCAT | 1 cut(s) | 4101 |
| NspI | RCATGY | 4 cut(s) | 1061, 2983, 3509, 4103 |
| PaeI | GCATGC | 1 cut(s) | 3509 |
| PaeR7I | CTCGAG | 1 cut(s) | 1191 |
| PagI | TCATGA | 4 cut(s) | 697, 1593, 1951, 3562 |
| PaqCI | CACCTGC | 1 cut(s) | 2659 |
| PciI | ACATGT | 1 cut(s) | 1057 |
| PciSI | GCTCTTC | 1 cut(s) | 2929 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 55, 284, 345, 4010 |
| PdiI | GCCGGC | 2 cut(s) | 1339, 1353 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1980, 3337, 3384 |
| PfeI | GAWTC | 5 cut(s) | 312, 368, 2175, 3827, 3921 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1271, 3842 |
| Ple19I | CGATCG | 2 cut(s) | 310, 2833 |
| PleI | GAGTC | 7 cut(s) | 47, 268, 874, 1183, 1689, 2354, 2863 |
| PluTI | GGCGCC | 1 cut(s) | 306 |
| PmaCI | CACGTG | 3 cut(s) | 50, 574, 3938 |
| PmlI | CACGTG | 3 cut(s) | 50, 574, 3938 |
| PpsI | GAGTC | 7 cut(s) | 47, 268, 874, 1183, 1689, 2354, 2863 |
| Ppu21I | YACGTR | 4 cut(s) | 50, 574, 1569, 3938 |
| PpuMI | RGGWCCY | 1 cut(s) | 757 |
| PscI | ACATGT | 1 cut(s) | 1057 |
| PshAI | GACNNNNGTC | 1 cut(s) | 57 |
| PshBI | ATTAAT | 1 cut(s) | 2559 |
| PsiI | TTATAA | 2 cut(s) | 582, 3105 |
| Psp1406I | AACGTT | 1 cut(s) | 3370 |
| Psp5II | RGGWCCY | 1 cut(s) | 757 |
| Psp6I | CCWGG | 7 cut(s) | 508, 1117, 1375, 1540, 2254, 3124, 3835 |
| PspCI | CACGTG | 3 cut(s) | 50, 574, 3938 |
| PspGI | CCWGG | 7 cut(s) | 508, 1117, 1375, 1540, 2254, 3124, 3835 |
| PspOMI | GGGCCC | 1 cut(s) | 3151 |
| PspPPI | RGGWCCY | 1 cut(s) | 757 |
| PspXI | VCTCGAGB | 1 cut(s) | 1191 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1242, 1274 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1181, 3842 |
| PsuI | RGATCY | 3 cut(s) | 1516, 3194, 3259 |
| PvuI | CGATCG | 2 cut(s) | 310, 2833 |
| PvuII | CAGCTG | 1 cut(s) | 3007 |
| RsaI | GTAC | 7 cut(s) | 985, 1384, 1818, 2286, 2583, 3725, 4028 |
| RsaNI | GTAC | 7 cut(s) | 984, 1383, 1817, 2285, 2582, 3724, 4027 |
| RseI | CAYNNNNRTG | 4 cut(s) | 696, 1221, 1956, 2121 |
| SacII | CCGCGG | 1 cut(s) | 346 |
| SalI | GTCGAC | 1 cut(s) | 2214 |
| SapI | GCTCTTC | 1 cut(s) | 2929 |
| ScaI | AGTACT | 1 cut(s) | 2583 |
| SchI | GAGTC | 7 cut(s) | 47, 269, 874, 1183, 1690, 2354, 2864 |
| SexAI | ACCWGGT | 1 cut(s) | 1375 |
| SfcI | CTRYAG | 2 cut(s) | 1725, 2481 |
| SfoI | GGCGCC | 1 cut(s) | 304 |
| Sfr274I | CTCGAG | 1 cut(s) | 1191 |
| Sfr303I | CCGCGG | 1 cut(s) | 346 |
| SgrBI | CCGCGG | 1 cut(s) | 346 |
| SinI | GGWCC | 5 cut(s) | 379, 757, 1499, 1572, 3833 |
| SlaI | CTCGAG | 1 cut(s) | 1191 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 696, 1221, 1956, 2121 |
| SmlI | CTYRAG | 4 cut(s) | 884, 1191, 2811, 3473 |
| SmoI | CTYRAG | 4 cut(s) | 884, 1191, 2811, 3473 |
| SpeI | ACTAGT | 1 cut(s) | 2578 |
| SphI | GCATGC | 1 cut(s) | 3509 |
| SspDI | GGCGCC | 1 cut(s) | 302 |
| SspMI | CTAG | 8 cut(s) | 431, 1491, 1899, 2579, 2630, 3623, 3642, 3737 |
| StyI | CCWWGG | 2 cut(s) | 1048, 2153 |
| TaaI | ACNGT | 6 cut(s) | 227, 500, 1316, 1366, 1930, 2206 |
| TaqII | GACCGA | 1 cut(s) | 158 |
| TatI | WGTACW | 1 cut(s) | 2581 |
| TauI | GCSGC | 6 cut(s) | 213, 216, 345, 348, 2163, 2699 |
| TfiI | GAWTC | 5 cut(s) | 312, 368, 2175, 3827, 3921 |
| TscAI | CASTG | 9 cut(s) | 454, 1369, 1935, 2020, 2209, 2766, 3507, 3747, 3975 |
| TseFI | GTSAC | 4 cut(s) | 45, 50, 2726, 4075 |
| Tsp45I | GTSAC | 4 cut(s) | 45, 50, 2726, 4075 |
| TspGWI | ACGGA | 3 cut(s) | 1600, 3933, 4019 |
| TspRI | CASTG | 9 cut(s) | 454, 1369, 1935, 2020, 2209, 2766, 3507, 3747, 3975 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1271, 3842 |
| Vha464I | CTTAAG | 1 cut(s) | 3473 |
| VpaK11BI | GGWCC | 5 cut(s) | 379, 757, 1499, 1572, 3833 |
| VspI | ATTAAT | 1 cut(s) | 2559 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1892 |
| XapI | RAATTY | 5 cut(s) | 701, 1946, 2676, 2849, 3629 |
| XbaI | TCTAGA | 1 cut(s) | 430 |
| XceI | RCATGY | 4 cut(s) | 1061, 2983, 3509, 4103 |
| XhoI | CTCGAG | 1 cut(s) | 1191 |
| XmiI | GTMKAC | 1 cut(s) | 2215 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1980, 3337, 3384 |
| XspI | CTAG | 8 cut(s) | 431, 1491, 1899, 2579, 2630, 3623, 3642, 3737 |
| ZrmI | AGTACT | 1 cut(s) | 2583 |
| Zsp2I | ATGCAT | 1 cut(s) | 4101 |