RLG00000006309

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
6181915 .. 6183029
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006309

Sequence Viewer

Length: 660 bp
ATGTGTTCATCGGATAGTCTCCCTCCAACGGTGGTGTTTCTGATTCTTGATAAATTGTTGGAACCTGCTGACCATGTTCGTTTTGCAGCCATTTGCAAAGACTATTATTCTCTTGCGAAAGACTACAACCAGGCAAACCAACACACCTGCCGGCGTAACGAGGATCGATCTACTTCCTCCTCCCATGCTTTTGATACGTTAACGGAAAGCAAACAACATTGTGCAGCGTTTCCGAAGGAAAAATCTACGACAATGTTAAGTTTCCAGGACTGCCTCCTAGTACTTATAGCTGTTTTGGTTCTACACATGGTTGGTTGGCCACAGTGGATGAATGGACCAACAAAGGTTTACAAGGTGGTGTTCAGTGACGGAGATGGCTCCGTTGTTGAGCAGCAAGTTGAACAAGCAGCATTGGAGATGAAGCTCTATTTGTGGATGACTATAATGCAGTCTCTGTTTCGGCATCAAACTTTCCCCAAGTGCCAGCGAAATTCCATATACTACACTACGAATTCTTCCCTAAAGGGTCCAAATGGTACGACTACTTTCAAGTTCAATTTAGAAGATGGAACCATAACACGACCTTACCCTCTAAATACGACGCAGAGGCACACGCCAGAAACACTTTGGATTATGCCATCATATAATGGACTCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

220

Amino Acids

24.99

Weight (kDa)

7.03

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 2 cut(s) 73, 155
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 2 cut(s) 490, 511
AfaI GTAC 2 cut(s) 282, 538
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 3 cut(s) 401, 550, 556
AjnI CCWGG 2 cut(s) 129, 264
AluBI AGCT 2 cut(s) 290, 424
AluI AGCT 2 cut(s) 290, 424
Alw26I GTCTC 2 cut(s) 23, 456
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 454
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 4 cut(s) 86, 224, 391, 407
ApoI RAATTY 2 cut(s) 490, 511
AspS9I GGNCC 2 cut(s) 335, 527
AvaII GGWCC 2 cut(s) 335, 527
BalI TGGCCA 1 cut(s) 319
BbvI GCAGC 4 cut(s) 98, 236, 403, 419
BccI CCATC 3 cut(s) 368, 560, 646
BciT130I CCWGG 2 cut(s) 131, 266
BcoDI GTCTC 2 cut(s) 23, 456
BfaI CTAG 2 cut(s) 278, 658
BfuAI ACCTGC 2 cut(s) 73, 155
BisI GCNGC 4 cut(s) 87, 225, 392, 408
BlsI GCNGC 4 cut(s) 88, 226, 393, 409
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 2 cut(s) 131, 266
Bme18I GGWCC 2 cut(s) 335, 527
BmgT120I GGNCC 2 cut(s) 335, 527
BmiI GGNNCC 4 cut(s) 63, 379, 528, 571
BmrFI CCNGG 2 cut(s) 131, 266
BmsI GCATC 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 150
BseBI CCWGG 2 cut(s) 131, 266
BseCI ATCGAT 1 cut(s) 166
BseGI GGATG 2 cut(s) 333, 441
BseLI CCNNNNNNNGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 4 cut(s) 98, 236, 403, 419
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 166
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 23, 456
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 163, 167
BspANI GGCC 1 cut(s) 319
BspDI ATCGAT 1 cut(s) 166
BspLI GGNNCC 4 cut(s) 63, 379, 528, 571
BspMI ACCTGC 2 cut(s) 73, 155
BspPI GGATC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssMI GATC 2 cut(s) 163, 167
Bst2UI CCWGG 2 cut(s) 131, 266
Bst4CI ACNGT 2 cut(s) 31, 324
BstC8I GCNNGC 2 cut(s) 152, 485
BstF5I GGATG 2 cut(s) 333, 441
BstKTI GATC 2 cut(s) 166, 170
BstMAI GTCTC 2 cut(s) 23, 456
BstMBI GATC 2 cut(s) 163, 167
BstNI CCWGG 2 cut(s) 131, 266
BstSCI CCNGG 2 cut(s) 129, 264
BstV1I GCAGC 4 cut(s) 98, 236, 403, 419
Bsu15I ATCGAT 1 cut(s) 166
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 1 cut(s) 166
BtsCI GGATG 2 cut(s) 333, 441
BtsIMutI CAGTG 2 cut(s) 329, 370
BveI ACCTGC 2 cut(s) 73, 155
Cac8I GCNNGC 2 cut(s) 152, 485
CaiI CAGNNNCTG 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 335, 527
ClaI ATCGAT 1 cut(s) 166
CseI GACGC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 281, 537
CviAII CATG 3 cut(s) 74, 185, 307
CviJI RGCY 5 cut(s) 89, 290, 319, 378, 424
CviKI_1 RGCY 5 cut(s) 89, 290, 319, 378, 424
CviQI GTAC 2 cut(s) 281, 537
DpnI GATC 2 cut(s) 165, 169
DpnII GATC 2 cut(s) 163, 167
EaeI YGGCCR 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 335, 527
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 129, 264
FaeI CATG 3 cut(s) 77, 188, 310
FatI CATG 3 cut(s) 73, 184, 306
Fnu4HI GCNGC 4 cut(s) 87, 225, 392, 408
FokI GGATG 2 cut(s) 340, 448
Fsp4HI GCNGC 4 cut(s) 87, 225, 392, 408
FspBI CTAG 2 cut(s) 278, 658
GluI GCNGC 4 cut(s) 87, 225, 392, 408
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 610
Hin1II CATG 3 cut(s) 77, 188, 310
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HinfI GANTC 2 cut(s) 43, 651
HpaI GTTAAC 1 cut(s) 201
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 201, 349
Hpy188I TCNGA 3 cut(s) 13, 42, 234
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 201, 349
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 31, 324
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 4 cut(s) 86, 96, 224, 448
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 77, 188, 310
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
KspAI GTTAAC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 163, 167
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 9 cut(s) 78, 116, 143, 160, 164, 251, 278, 497, 630
Lsp1109I GCAGC 4 cut(s) 98, 236, 403, 419
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 278, 658
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 155, 365
MalI GATC 2 cut(s) 165, 169
MboI GATC 2 cut(s) 163, 167
MboII GAAGA 2 cut(s) 507, 575
MlsI TGGCCA 1 cut(s) 319
MluCI AATT 4 cut(s) 53, 490, 511, 556
MluNI TGGCCA 1 cut(s) 319
MlyI GAGTC 1 cut(s) 645
MmeI TCCRAC 2 cut(s) 39, 50
MnlI CCTC 7 cut(s) 33, 154, 187, 190, 284, 600, 600
Mox20I TGGCCA 1 cut(s) 319
MroNI GCCGGC 1 cut(s) 150
MscI TGGCCA 1 cut(s) 319
MseI TTAA 2 cut(s) 200, 257
Msp20I TGGCCA 1 cut(s) 319
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 2 cut(s) 131, 266
MvaI CCWGG 2 cut(s) 131, 266
NaeI GCCGGC 1 cut(s) 152
NdeII GATC 2 cut(s) 163, 167
NgoMIV GCCGGC 1 cut(s) 150
NlaIII CATG 3 cut(s) 77, 188, 310
NlaIV GGNNCC 4 cut(s) 63, 379, 528, 571
NmuCI GTSAC 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 4 cut(s) 88, 226, 393, 409
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
Psp6I CCWGG 2 cut(s) 129, 264
PspGI CCWGG 2 cut(s) 129, 264
PspN4I GGNNCC 4 cut(s) 63, 379, 528, 571
PspPI GGNCC 2 cut(s) 335, 527
PstNI CAGNNNCTG 1 cut(s) 454
RsaI GTAC 2 cut(s) 282, 538
RsaNI GTAC 2 cut(s) 281, 537
SaqAI TTAA 2 cut(s) 200, 257
SatI GCNGC 4 cut(s) 87, 225, 392, 408
Sau3AI GATC 2 cut(s) 163, 167
Sau96I GGNCC 2 cut(s) 335, 527
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 1 cut(s) 645
ScrFI CCNGG 2 cut(s) 131, 266
SetI ASST 8 cut(s) 67, 149, 200, 292, 348, 357, 426, 586
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 2 cut(s) 335, 527
Sse9I AATT 4 cut(s) 53, 490, 511, 556
SspMI CTAG 2 cut(s) 278, 658
StyD4I CCNGG 2 cut(s) 129, 264
TaaI ACNGT 2 cut(s) 31, 324
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 166
TasI AATT 4 cut(s) 53, 490, 511, 556
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 200, 257
Tru9I TTAA 2 cut(s) 200, 257
TscAI CASTG 2 cut(s) 329, 370
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 4 cut(s) 86, 224, 391, 407
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 344, 434
TspGWI ACGGA 3 cut(s) 218, 370, 384
TspRI CASTG 2 cut(s) 329, 370
VpaK11BI GGWCC 2 cut(s) 335, 527
XapI RAATTY 2 cut(s) 490, 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 624
XspI CTAG 2 cut(s) 278, 658
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.