Rh2DG677700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000064
Physical Location & Seq
Forward (+)
89839276 .. 89840833
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG677700.1

Sequence Viewer

Length: 1419 bp
ATGAGAAAGCACGAGAGGGACTATGGGGTTTCTAGTTCAATTGCAAAGAAGCACAAGACAGACGAGAACCCAAAAGAGGTCCGACCAACACTGCCAAATTCCAAGCACAAGCATGCAAGAGATTCTGGGGATTCTAGTTCAATCGCAAAGAAGAAGCTGAAAACTGAAGTAGAAGTCTCTTCAAGTGGGGAAGGGAACCCACTGGCATGTCTTCCTCCAGATGTTTCCTTTATGATTCTTGATAAGTTGTTCGAACCCACCGACCATCTTTCTTTCGCTAGGGTTTGCAAAGATTGGTGCTCTATTTCAAGAAACTATAATATTGCAACTCAACGCTGGCACAAGAAGGGCAAGTTGCTTCCCCTTTTCTTGGTAAGTACTGAATCCGAATCGACAGGAAAGACTACCAACCATGAACTCGAAGCATATAACGTTTCTAGTGGAAAAAGATGTTACGATAATATTCATTTTCCGGTCACTCATGGAAAGAGGTGTTGTGGTTCTAGCCATGGTTGGTTGGCCATATTAGATATAGAAGGCATATGTCTCTCCATAACTCTGGTGCACCCTTTCCAAAAATCAGTGGAAGCCATCAAACTCCCTCTTTTGGATTTCATGACGACCAAGTCGTTGCAGTACTATGACATTAACCACTTAAAGAACACCTACCAAGAATACATTCGAAAGGTTATCTTGTCCTCCGATCCCATCTTGAATCGGGATAATTATGTTGTTGTTGTGCTCTACGGTTATGGTGGTTCAAAGTTGGCTTTCATCAAAGGAGGACAACAAAGATGGACTTATCCCGATAGGCGTCAAAGCTGCCTTAAGGATGCCATATTTTATAGAAACCAAGTTTATGCAGTTGGCGGAGGCGATGGAAATGAAAAAATCCTCTCATTTGATGTTAATAGTTGTAATAAACCTTCAAAGCCTCCAAAAGCAAACCAGCGTACGCCTAATAATGTCCTAAAAAAATGCTCTGCTAGTTCATATCTTGTGGAATCAGTCGAGGGAGACCACCTATGGCATGTTAGAAGACTAGTTTCTTATTCAAGGAGAGCCGATAAGTACATTGAGAGGTTTATGGTTTACAAGGTGGCGTTTGAGGACAAAGATGGATCGGTTGTGGAACAAGTAGAGGTACAAAGCATCGGAGACGAGACTCTGTTTGTGGGTGCATCTCATTCAATAGCCGTCCTGGCTTCAAACTTTCCTGGGTGTAAGCCAAATTCCATATACTATGCCACTGAGGAGCCGTATTGTTTTGGAGATCCGGACCACAAAACCTATCATATATCTAGTCTAGATGATGGAACCATCACGGAATATCAGCAAAACCTACGCCGGCATCCAAGTTTACATTTAGGAATTCCATGTGGAGTTTGGATTCTACCAATGTTTAAGGGACTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

472

Amino Acids

53.4

Weight (kDa)

8.82

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 69 - 104 1.8e-06 F-box-like
Beta-prop_KIB1-4 PF03478 147 - 425 3.4e-46 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 625
AccIII TCCGGA 1 cut(s) 1276
AciI CCGC 1 cut(s) 870
AclI AACGTT 1 cut(s) 432
AclWI GGATC 3 cut(s) 698, 1129, 1268
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 3 cut(s) 97, 1231, 1371
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 814
AfaI GTAC 5 cut(s) 379, 638, 955, 1073, 1146
AfiI CCNNNNNNNGG 3 cut(s) 76, 370, 607
AflII CTTAAG 1 cut(s) 827
AhlI ACTAGT 1 cut(s) 1042
AjnI CCWGG 2 cut(s) 1200, 1216
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 2 cut(s) 157, 822
AluI AGCT 2 cut(s) 157, 822
Alw21I GWGCWC 3 cut(s) 302, 567, 744
Alw26I GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 3 cut(s) 698, 1129, 1268
Aor13HI TCCGGA 1 cut(s) 1276
AoxI GGCC 1 cut(s) 519
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 822
ApoI RAATTY 3 cut(s) 97, 1231, 1371
Asp700I GAANNNNTTC 1 cut(s) 678
AspS9I GGNCC 2 cut(s) 79, 1279
AsuII TTCGAA 2 cut(s) 252, 682
AvaII GGWCC 2 cut(s) 79, 1279
BaeGI GKGCMC 1 cut(s) 567
BalI TGGCCA 1 cut(s) 521
BarI GAAGNNNNNNTAC 2 cut(s) 910, 942
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 203, 1045
Bbv12I GWGCWC 3 cut(s) 302, 567, 744
BbvI GCAGC 1 cut(s) 809
BccI CCATC 8 cut(s) 273, 599, 716, 789, 872, 1112, 1307, 1328
BceAI ACGGC 2 cut(s) 1181, 1243
BciT130I CCWGG 2 cut(s) 1202, 1218
BcoDI GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
BcuI ACTAGT 1 cut(s) 1042
BfrI CTTAAG 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 1202
BisI GCNGC 1 cut(s) 823
BlsI GCNGC 1 cut(s) 824
BmcAI AGTACT 2 cut(s) 379, 638
Bme1390I CCNGG 2 cut(s) 1202, 1218
Bme18I GGWCC 2 cut(s) 79, 1279
BmgT120I GGNCC 2 cut(s) 79, 1279
BmiI GGNNCC 3 cut(s) 197, 1257, 1318
BmrFI CCNGG 2 cut(s) 1202, 1218
BmsI GCATC 4 cut(s) 823, 1161, 1190, 1360
BpiI GAAGAC 2 cut(s) 203, 1045
BpmI CTGGAG 1 cut(s) 201
Bpu14I TTCGAA 2 cut(s) 252, 682
BsaHI GRCGYC 1 cut(s) 814
BsaI GGTCTC 1 cut(s) 1011
BsaJI CCNNGG 2 cut(s) 508, 1217
BsaWI WCCGGW 2 cut(s) 472, 1276
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 370, 607
Bse118I RCCGGY 1 cut(s) 1347
Bse1I ACTGG 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 1276
BseBI CCWGG 2 cut(s) 1202, 1218
BseDI CCNNGG 2 cut(s) 508, 1217
BseGI GGATG 2 cut(s) 838, 1351
BseLI CCNNNNNNNGG 3 cut(s) 76, 370, 607
BseMII CTCAG 1 cut(s) 1242
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 1268
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 1 cut(s) 809
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 3 cut(s) 302, 567, 744
BsiSI CCGG 3 cut(s) 473, 1277, 1348
BsiWI CGTACG 1 cut(s) 953
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 76, 370, 607
BsmAI GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
BsmBI CGTCTC 1 cut(s) 1152
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 1011
Bsp119I TTCGAA 2 cut(s) 252, 682
Bsp1286I GDGCHC 3 cut(s) 302, 567, 744
Bsp13I TCCGGA 1 cut(s) 1276
Bsp143I GATC 3 cut(s) 703, 1121, 1273
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 1 cut(s) 870
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 1243
BspEI TCCGGA 1 cut(s) 1276
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 197, 1257, 1318
BspPI GGATC 3 cut(s) 698, 1129, 1268
BspT104I TTCGAA 2 cut(s) 252, 682
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 1347
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 1347
BssECI CCNNGG 2 cut(s) 508, 1217
BssMI GATC 3 cut(s) 703, 1121, 1273
BssNI GRCGYC 1 cut(s) 814
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 1202, 1218
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 814
BstAFI CTTAAG 1 cut(s) 827
BstBI TTCGAA 2 cut(s) 252, 682
BstC8I GCNNGC 3 cut(s) 114, 338, 1349
BstDEI CTNAG 1 cut(s) 1251
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 838, 1351
BstKTI GATC 3 cut(s) 706, 1124, 1276
BstMAI GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
BstMBI GATC 3 cut(s) 703, 1121, 1273
BstMWI GCNNNNNNNGC 1 cut(s) 1202
BstNI CCWGG 2 cut(s) 1202, 1218
BstNSI RCATGY 3 cut(s) 116, 210, 1034
BstSCI CCNGG 2 cut(s) 1200, 1216
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 809
BstV2I GAAGAC 2 cut(s) 203, 1045
BstX2I RGATCY 1 cut(s) 1273
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 1273
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 838, 1351
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 4 cut(s) 89, 200, 588, 1248
Cac8I GCNNGC 3 cut(s) 114, 338, 1349
CciI TCATGA 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 1347
Cfr13I GGNCC 2 cut(s) 79, 1279
CseI GACGC 1 cut(s) 803
Csp6I GTAC 5 cut(s) 378, 637, 954, 1072, 1145
CviAII CATG 8 cut(s) 113, 207, 413, 482, 509, 616, 1031, 1377
CviQI GTAC 5 cut(s) 378, 637, 954, 1072, 1145
DdeI CTNAG 1 cut(s) 1251
DpnI GATC 3 cut(s) 705, 1123, 1275
DpnII GATC 3 cut(s) 703, 1121, 1273
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 79, 1279
Eco57I CTGAAG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 1371
EcoRII CCWGG 2 cut(s) 1200, 1216
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 1152
FaeI CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
FalI AAGNNNNNCTT 4 cut(s) 677, 709, 784, 816
FaqI GGGAC 1 cut(s) 32
FatI CATG 8 cut(s) 112, 206, 412, 481, 508, 615, 1030, 1376
FauNDI CATATG 1 cut(s) 542
Fnu4HI GCNGC 1 cut(s) 823
FokI GGATG 2 cut(s) 845, 1338
Fsp4HI GCNGC 1 cut(s) 823
GluI GCNGC 1 cut(s) 823
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 521
HapII CCGG 3 cut(s) 473, 1277, 1348
HgaI GACGC 1 cut(s) 803
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
HinfI GANTC 9 cut(s) 122, 131, 235, 383, 389, 715, 1004, 1165, 1390
HpaII CCGG 3 cut(s) 473, 1277, 1348
Hpy166II GTNNAC 3 cut(s) 565, 1093, 1361
Hpy188I TCNGA 4 cut(s) 83, 388, 703, 1157
Hpy188III TCNNGA 9 cut(s) 218, 239, 309, 616, 712, 719, 806, 1277, 1307
Hpy8I GTNNAC 3 cut(s) 565, 1093, 1361
HpyAV CCTTC 4 cut(s) 185, 340, 530, 936
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 8 cut(s) 44, 116, 288, 326, 565, 634, 863, 1181
HpyF10VI GCNNNNNNNGC 1 cut(s) 1202
HpyF3I CTNAG 1 cut(s) 1251
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
Kpn2I TCCGGA 1 cut(s) 1276
KroI GCCGGC 1 cut(s) 1347
KroNI GCCGGC 1 cut(s) 1349
Kzo9I GATC 3 cut(s) 703, 1121, 1273
LmnI GCTCC 1 cut(s) 1255
Lsp1109I GCAGC 1 cut(s) 809
LweI GCATC 4 cut(s) 823, 1161, 1190, 1360
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 452, 475
MalI GATC 3 cut(s) 705, 1123, 1275
MboI GATC 3 cut(s) 703, 1121, 1273
MboII GAAGA 4 cut(s) 163, 171, 203, 1050
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 3 cut(s) 302, 567, 744
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 5 cut(s) 39, 97, 724, 1231, 1371
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 1 cut(s) 1159
MmeI TCCRAC 1 cut(s) 106
Mox20I TGGCCA 1 cut(s) 521
MroI TCCGGA 1 cut(s) 1276
MroNI GCCGGC 1 cut(s) 1347
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 1 cut(s) 521
MseI TTAA 5 cut(s) 648, 656, 828, 909, 1404
MslI CAYNNNNRTG 2 cut(s) 111, 205
Msp20I TGGCCA 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 3 cut(s) 473, 1277, 1348
MspR9I CCNGG 2 cut(s) 1202, 1218
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 2 cut(s) 1202, 1218
MwoI GCNNNNNNNGC 1 cut(s) 1202
NaeI GCCGGC 1 cut(s) 1349
NcoI CCATGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 542
NdeII GATC 3 cut(s) 703, 1121, 1273
NgoMIV GCCGGC 1 cut(s) 1347
NlaIII CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
NlaIV GGNNCC 3 cut(s) 197, 1257, 1318
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 3 cut(s) 116, 210, 1034
NspV TTCGAA 2 cut(s) 252, 682
PaeI GCATGC 1 cut(s) 116
PagI TCATGA 1 cut(s) 615
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 626
PdiI GCCGGC 1 cut(s) 1349
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 8 cut(s) 122, 131, 235, 383, 389, 715, 1004, 1390
Pfl23II CGTACG 1 cut(s) 953
PflFI GACNNNGTC 1 cut(s) 625
PkrI GCNGC 1 cut(s) 824
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 1200, 1216
PspGI CCWGG 2 cut(s) 1200, 1216
PspLI CGTACG 1 cut(s) 953
PspN4I GGNNCC 3 cut(s) 197, 1257, 1318
PspPI GGNCC 2 cut(s) 79, 1279
PsuI RGATCY 1 cut(s) 1273
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 5 cut(s) 379, 638, 955, 1073, 1146
RsaNI GTAC 5 cut(s) 378, 637, 954, 1072, 1145
RseI CAYNNNNRTG 2 cut(s) 111, 205
SaqAI TTAA 5 cut(s) 648, 656, 828, 909, 1404
SatI GCNGC 1 cut(s) 823
Sau3AI GATC 3 cut(s) 703, 1121, 1273
Sau96I GGNCC 2 cut(s) 79, 1279
ScaI AGTACT 2 cut(s) 379, 638
SchI GAGTC 1 cut(s) 1159
ScrFI CCNGG 2 cut(s) 1202, 1218
SduI GDGCHC 3 cut(s) 302, 567, 744
SfaNI GCATC 4 cut(s) 823, 1161, 1190, 1360
SfuI TTCGAA 2 cut(s) 252, 682
SinI GGWCC 2 cut(s) 79, 1279
SmiMI CAYNNNNRTG 2 cut(s) 111, 205
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SpeI ACTAGT 1 cut(s) 1042
SphI GCATGC 1 cut(s) 116
Sse9I AATT 5 cut(s) 39, 97, 724, 1231, 1371
SsiI CCGC 1 cut(s) 870
SspI AATATT 2 cut(s) 322, 463
StyD4I CCNGG 2 cut(s) 1200, 1216
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 1 cut(s) 435
TaqI TCGA 5 cut(s) 252, 392, 420, 682, 1011
TasI AATT 5 cut(s) 39, 97, 724, 1231, 1371
TatI WGTACW 3 cut(s) 377, 636, 1071
TfiI GAWTC 8 cut(s) 122, 131, 235, 383, 389, 715, 1004, 1390
Tru1I TTAA 5 cut(s) 648, 656, 828, 909, 1404
Tru9I TTAA 5 cut(s) 648, 656, 828, 909, 1404
TscAI CASTG 4 cut(s) 96, 207, 588, 1255
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 822
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 6 cut(s) 429, 455, 604, 763, 900, 981
TspGWI ACGGA 1 cut(s) 1340
TspRI CASTG 4 cut(s) 96, 207, 588, 1255
Tth111I GACNNNGTC 1 cut(s) 625
Vha464I CTTAAG 1 cut(s) 827
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 79, 1279
XapI RAATTY 3 cut(s) 97, 1231, 1371
XbaI TCTAGA 1 cut(s) 1306
XceI RCATGY 3 cut(s) 116, 210, 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 1383
XmnI GAANNNNTTC 1 cut(s) 678
ZrmI AGTACT 2 cut(s) 379, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.