Rw4G034250

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000064
Physical Location & Seq
Forward (+)
61376771 .. 61378616
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034250.1

Sequence Viewer

Length: 1287 bp
ATGCATGAGGTCCACCCGGATAACAAGAATAAGCGACGTTTGGAGTTTGAGCTCCCTCCCCATAGGTCAATTAAGAAGCTCCACCGAATTGCCTGCAACGCTAGTTGCTCATCTGTATCAGAATGGGCAAGTCTTCCGAAGGACATTCTCCTTTTGATGTTGCACAAGTTGTTCGAACCCATTGACCATGTTCGTCTGGCTGCTGTTTGCAACCATTGGCATAAAGTCTCCAAAGAGCATAATCATACTACTCAGCGCTGGTGCAACCTACTTCCAATGCTCATGATCCCCCCCTCCCGCCCCCCTAGCCCAATGAAGCAAATGGTTTATAGCCTTTCTGAAGGAGAAACCTATACAAACGTTCAATTACCGGTGCCTTATGATAGGAGGTGCTGTGGCTCCAGCCATGGTTGGTTGGCCACAGCACACGAGAATTTCGCCATAACTCTTTTGAATCCTTTCAGAAAAGCGGCGGCCATTCATTTGCCTCCCTTGACAACCCCACATAATCTCCGAGACTACCCATTTGGGTTACAGAAGTTCCAGGATCAGTTGAAGAAGCGCTACGACTATTATGTCTGTAAGGTTATATTATCTGCTGACCCGTCTTTGAATCCGCATAATTATGTGGTTGTGGCAACCTACGAATATTGTTGCAGGTTGGCTTTCATTAAAGCAGGACAAAGAGATTGGACTTATGTCGAGAAAACATATATGTTTTCTGATGCTATTTTTCACAGAAATGAAATTTATGCAGTTGGACTAGGGGGAATAATTGCGTCAGTTGATGTCAATAGTAGTAATGATCCTTCGCGGCCGCCAGAAGCAATTCCACTTACACGTTTACGACCAATGGAACACCCTCTGTTCCCATACAAAGCAGATAAGGCATATCTTGTTGAATCAACCAATGGAGACTTGCTGCATGTTCGAAGGTTTTTGAAACGAAAGGAAGGTCTTGATCAAAAGCTGGGGGTTATCAATTTTGTGGTATACAAGGTGTTATTCAACGACAACGATGGGACCTTTGTGAGGCAGGATCTGATAGACAGCATTGGGGATGATGCTTTGTTCTTGGGTGATAATCATTCAATATCTGTTTCGGCTTCAAATTTTCCTAGGTGCCAACCAAATTCCATCTACTTCACAAATGACATTATGAAGGGTGGTATGGGTATCTTCAATTTAGCAGACAAGACCGCCACACAACACTACCCTCTAAATCCCAGTGAGAGGTACATCCGACCCGCTATATGGATTGTGCCACCGTTCAATGGTCTTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

428

Amino Acids

49.08

Weight (kDa)

8.93

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 42 - 78 2e-06 F-box-like
Beta-prop_KIB1-4 PF03478 109 - 395 1.8e-53 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 648
AccB1I GGYRCC 2 cut(s) 373, 1122
AccI GTMKAC 1 cut(s) 993
AccII CGCG 1 cut(s) 814
AciI CCGC 8 cut(s) 298, 470, 473, 617, 814, 818, 1200, 1248
AclI AACGTT 1 cut(s) 360
AclWI GGATC 4 cut(s) 280, 555, 800, 1047
AcoI YGGCCR 3 cut(s) 417, 474, 815
AcsI RAATTY 4 cut(s) 433, 747, 1111, 1132
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 1 cut(s) 1238
AfeI AGCGCT 2 cut(s) 257, 563
AfiI CCNNNNNNNGG 4 cut(s) 1032, 1233, 1254, 1274
AflIII ACRYGT 1 cut(s) 839
AgeI ACCGGT 1 cut(s) 370
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 3 cut(s) 52, 79, 970
AluI AGCT 3 cut(s) 52, 79, 970
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 232, 510, 909
AlwI GGATC 4 cut(s) 280, 555, 800, 1047
AlwNI CAGNNNCTG 1 cut(s) 1042
Aor51HI AGCGCT 2 cut(s) 257, 563
AoxI GGCC 3 cut(s) 417, 474, 815
ApeKI GCWGC 2 cut(s) 200, 922
ApoI RAATTY 4 cut(s) 433, 747, 1111, 1132
ArsI GACNNNNNNTTYG 4 cut(s) 509, 541, 940, 972
AsiGI ACCGGT 1 cut(s) 370
Asp700I GAANNNNTTC 2 cut(s) 458, 828
AspA2I CCTAGG 1 cut(s) 1118
AspLEI GCGC 2 cut(s) 258, 564
AspS9I GGNCC 2 cut(s) 10, 1023
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 1091
AsuII TTCGAA 2 cut(s) 174, 931
AvaII GGWCC 2 cut(s) 10, 1023
AvrII CCTAGG 1 cut(s) 1118
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 373, 1122
BanII GRGCYC 1 cut(s) 54
BarI GAAGNNNNNNTAC 4 cut(s) 548, 580, 793, 825
BauI CACGAG 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 125, 1271
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 187, 909
BccI CCATC 2 cut(s) 1013, 1145
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 1 cut(s) 545
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 3 cut(s) 232, 510, 909
BfaI CTAG 5 cut(s) 102, 306, 764, 1119, 1285
BfoI RGCGCY 2 cut(s) 259, 565
BfuAI ACCTGC 1 cut(s) 648
BisI GCNGC 6 cut(s) 201, 471, 474, 815, 818, 923
BlnI CCTAGG 1 cut(s) 1118
BlsI GCNGC 6 cut(s) 202, 472, 475, 816, 819, 924
Bme1390I CCNGG 2 cut(s) 17, 545
Bme18I GGWCC 2 cut(s) 10, 1023
BmgT120I GGNCC 2 cut(s) 10, 1023
BmiI GGNNCC 4 cut(s) 375, 400, 1024, 1124
BmrFI CCNGG 2 cut(s) 17, 545
BmrI ACTGGG 1 cut(s) 1221
BmsI GCATC 2 cut(s) 715, 1054
BmuI ACTGGG 1 cut(s) 1221
BoxI GACNNNNGTC 1 cut(s) 698
BpiI GAAGAC 2 cut(s) 125, 1271
BpmI CTGGAG 1 cut(s) 385
Bpu14I TTCGAA 2 cut(s) 174, 931
BpuMI CCSGG 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 406, 1118
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 4 cut(s) 379, 409, 495, 525
Bsc4I CCNNNNNNNGG 4 cut(s) 1032, 1233, 1254, 1274
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 1227
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 406, 1118
BseGI GGATG 2 cut(s) 1066, 1239
BseLI CCNNNNNNNGG 4 cut(s) 1032, 1233, 1254, 1274
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 1227
BseX3I CGGCCG 1 cut(s) 815
BseXI GCAGC 2 cut(s) 187, 909
BseYI CCCAGC 1 cut(s) 970
Bsh1236I CGCG 1 cut(s) 814
Bsh1285I CGRYCG 1 cut(s) 818
BshFI GGCC 3 cut(s) 419, 476, 817
BshNI GGYRCC 2 cut(s) 373, 1122
BshTI ACCGGT 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 818
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 17, 371
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 4 cut(s) 1032, 1233, 1254, 1274
BsmAI GTCTC 3 cut(s) 232, 510, 909
BsmFI GGGAC 1 cut(s) 1036
BsnI GGCC 3 cut(s) 419, 476, 817
Bsp119I TTCGAA 2 cut(s) 174, 931
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 5 cut(s) 285, 547, 805, 961, 1039
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 8 cut(s) 298, 470, 473, 617, 814, 818, 1200, 1248
BspANI GGCC 3 cut(s) 419, 476, 817
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 814
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 4 cut(s) 375, 400, 1024, 1124
BspMI ACCTGC 1 cut(s) 648
BspPI GGATC 4 cut(s) 280, 555, 800, 1047
BspT104I TTCGAA 2 cut(s) 174, 931
BspT107I GGYRCC 2 cut(s) 373, 1122
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 1227
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 406, 1118
BssMI GATC 5 cut(s) 285, 547, 805, 961, 1039
BssNAI GTATAC 1 cut(s) 994
BssSI CACGAG 1 cut(s) 428
BssT1I CCWWGG 2 cut(s) 406, 1118
Bst1107I GTATAC 1 cut(s) 994
Bst2BI CACGAG 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 1269
BstBI TTCGAA 2 cut(s) 174, 931
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 406
BstENI CCTNNNNNAGG 1 cut(s) 1030
BstF5I GGATG 2 cut(s) 1066, 1239
BstFNI CGCG 1 cut(s) 814
BstH2I RGCGCY 2 cut(s) 259, 565
BstHHI GCGC 2 cut(s) 258, 564
BstKTI GATC 5 cut(s) 288, 550, 808, 964, 1042
BstMAI GTCTC 3 cut(s) 232, 510, 909
BstMBI GATC 5 cut(s) 285, 547, 805, 961, 1039
BstMCI CGRYCG 1 cut(s) 818
BstMWI GCNNNNNNNGC 3 cut(s) 98, 306, 887
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 929
BstPAI GACNNNNGTC 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 15, 543
BstUI CGCG 1 cut(s) 814
BstV1I GCAGC 2 cut(s) 187, 909
BstV2I GAAGAC 2 cut(s) 125, 1271
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
BstZ17I GTATAC 1 cut(s) 994
BstZI CGGCCG 1 cut(s) 815
BsuRI GGCC 3 cut(s) 419, 476, 817
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 1066, 1239
BtsIMutI CAGTG 1 cut(s) 1234
BveI ACCTGC 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 1042
CciI TCATGA 1 cut(s) 282
CciNI GCGGCCGC 1 cut(s) 815
CfoI GCGC 2 cut(s) 258, 564
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 10, 1023
CseI GACGC 1 cut(s) 768
Csp6I GTAC 1 cut(s) 1237
CspAI ACCGGT 1 cut(s) 370
CviAII CATG 5 cut(s) 5, 188, 283, 407, 926
CviQI GTAC 1 cut(s) 1237
DdeI CTNAG 1 cut(s) 252
DpnI GATC 5 cut(s) 287, 549, 807, 963, 1041
DpnII GATC 5 cut(s) 285, 547, 805, 961, 1039
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
EaeI YGGCCR 3 cut(s) 417, 474, 815
EagI CGGCCG 1 cut(s) 815
Ecl136II GAGCTC 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 815
Eco130I CCWWGG 2 cut(s) 406, 1118
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 10, 1023
Eco47III AGCGCT 2 cut(s) 257, 563
Eco52I CGGCCG 1 cut(s) 815
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 1030
EcoO109I RGGNCCY 1 cut(s) 1023
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 406, 1118
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 406, 1118
FaeI CATG 5 cut(s) 8, 191, 286, 410, 929
FaqI GGGAC 1 cut(s) 1036
FatI CATG 5 cut(s) 4, 187, 282, 406, 925
FauI CCCGC 2 cut(s) 305, 1255
FbaI TGATCA 1 cut(s) 961
FblI GTMKAC 1 cut(s) 993
Fnu4HI GCNGC 6 cut(s) 201, 471, 474, 815, 818, 923
FokI GGATG 2 cut(s) 1073, 1226
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 6 cut(s) 201, 471, 474, 815, 818, 923
FspBI CTAG 5 cut(s) 102, 306, 764, 1119, 1285
GlaI GCGC 2 cut(s) 257, 563
GluI GCNGC 6 cut(s) 201, 471, 474, 815, 818, 923
GsaI CCCAGC 1 cut(s) 974
GsuI CTGGAG 1 cut(s) 385
HaeII RGCGCY 2 cut(s) 259, 565
HaeIII GGCC 3 cut(s) 419, 476, 817
HapII CCGG 2 cut(s) 17, 371
HgaI GACGC 1 cut(s) 768
HhaI GCGC 2 cut(s) 258, 564
Hin1II CATG 5 cut(s) 8, 191, 286, 410, 929
Hin6I GCGC 2 cut(s) 256, 562
HinP1I GCGC 2 cut(s) 256, 562
HinfI GANTC 3 cut(s) 454, 613, 902
HpaII CCGG 2 cut(s) 17, 371
HphI GGTGA 1 cut(s) 1091
Hpy166II GTNNAC 3 cut(s) 13, 845, 994
Hpy188I TCNGA 8 cut(s) 121, 138, 340, 464, 515, 724, 1044, 1244
Hpy188III TCNNGA 3 cut(s) 283, 703, 959
Hpy8I GTNNAC 3 cut(s) 13, 845, 994
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 6 cut(s) 133, 335, 819, 927, 947, 1156
HpyCH4III ACNGT 1 cut(s) 1269
HpyCH4IV ACGT 3 cut(s) 37, 360, 841
HpyCH4V TGCA 8 cut(s) 4, 96, 163, 210, 264, 657, 755, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 306, 887
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 3 cut(s) 37, 360, 841
Hsp92II CATG 5 cut(s) 8, 191, 286, 410, 929
HspAI GCGC 2 cut(s) 256, 562
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 5 cut(s) 285, 547, 805, 961, 1039
LmnI GCTCC 3 cut(s) 57, 84, 404
Lsp1109I GCAGC 2 cut(s) 187, 909
LweI GCATC 2 cut(s) 715, 1054
MaeI CTAG 5 cut(s) 102, 306, 764, 1119, 1285
MaeII ACGT 3 cut(s) 37, 360, 841
MaeIII GTNAC 1 cut(s) 531
MalI GATC 5 cut(s) 287, 549, 807, 963, 1041
MboI GATC 5 cut(s) 285, 547, 805, 961, 1039
MboII GAAGA 4 cut(s) 125, 568, 1171, 1271
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 419
MluNI TGGCCA 1 cut(s) 419
MmeI TCCRAC 2 cut(s) 739, 1267
MnlI CCTC 8 cut(s) 66, 304, 381, 498, 873, 1026, 1227, 1227
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 458, 828
MscI TGGCCA 1 cut(s) 419
MseI TTAA 2 cut(s) 72, 672
MslI CAYNNNNRTG 2 cut(s) 624, 741
Msp20I TGGCCA 1 cut(s) 419
MspI CCGG 2 cut(s) 17, 371
MspR9I CCNGG 2 cut(s) 17, 545
MvaI CCWGG 1 cut(s) 545
MvnI CGCG 1 cut(s) 814
MwoI GCNNNNNNNGC 3 cut(s) 98, 306, 887
NciI CCSGG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 406
NdeII GATC 5 cut(s) 285, 547, 805, 961, 1039
NlaIII CATG 5 cut(s) 8, 191, 286, 410, 929
NlaIV GGNNCC 4 cut(s) 375, 400, 1024, 1124
NotI GCGGCCGC 1 cut(s) 815
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 929
NspV TTCGAA 2 cut(s) 174, 931
PagI TCATGA 1 cut(s) 282
PdmI GAANNNNTTC 2 cut(s) 458, 828
PfeI GAWTC 3 cut(s) 454, 613, 902
PfoI TCCNGGA 1 cut(s) 543
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 6 cut(s) 202, 472, 475, 816, 819, 924
PpuMI RGGWCCY 1 cut(s) 1023
PshAI GACNNNNGTC 1 cut(s) 698
Psp124BI GAGCTC 1 cut(s) 54
Psp1406I AACGTT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 1023
Psp6I CCWGG 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 4 cut(s) 375, 400, 1024, 1124
PspPI GGNCC 2 cut(s) 10, 1023
PspPPI RGGWCCY 1 cut(s) 1023
PstNI CAGNNNCTG 1 cut(s) 1042
PsuI RGATCY 1 cut(s) 1039
RsaI GTAC 1 cut(s) 1238
RsaNI GTAC 1 cut(s) 1237
RseI CAYNNNNRTG 2 cut(s) 624, 741
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 72, 672
SatI GCNGC 6 cut(s) 201, 471, 474, 815, 818, 923
Sau3AI GATC 5 cut(s) 285, 547, 805, 961, 1039
Sau96I GGNCC 2 cut(s) 10, 1023
ScrFI CCNGG 2 cut(s) 17, 545
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 2 cut(s) 715, 1054
SfuI TTCGAA 2 cut(s) 174, 931
SinI GGWCC 2 cut(s) 10, 1023
SmiMI CAYNNNNRTG 2 cut(s) 624, 741
SsiI CCGC 8 cut(s) 298, 470, 473, 617, 814, 818, 1200, 1248
SspI AATATT 1 cut(s) 650
SspMI CTAG 5 cut(s) 102, 306, 764, 1119, 1285
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 15, 543
StyI CCWWGG 2 cut(s) 406, 1118
TaaI ACNGT 1 cut(s) 1269
TaiI ACGT 3 cut(s) 40, 363, 844
TaqI TCGA 3 cut(s) 174, 702, 931
TauI GCSGC 4 cut(s) 473, 476, 817, 820
TfiI GAWTC 3 cut(s) 454, 613, 902
Tru1I TTAA 2 cut(s) 72, 672
Tru9I TTAA 2 cut(s) 72, 672
TscAI CASTG 1 cut(s) 1234
TseI GCWGC 2 cut(s) 200, 922
TspDTI ATGAA 5 cut(s) 329, 470, 658, 759, 1175
TspRI CASTG 1 cut(s) 1234
VpaK11BI GGWCC 2 cut(s) 10, 1023
XagI CCTNNNNNAGG 1 cut(s) 1030
XapI RAATTY 4 cut(s) 433, 747, 1111, 1132
XceI RCATGY 1 cut(s) 929
XmaJI CCTAGG 1 cut(s) 1118
XmiI GTMKAC 1 cut(s) 993
XmnI GAANNNNTTC 2 cut(s) 458, 828
XspI CTAG 5 cut(s) 102, 306, 764, 1119, 1285
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.