26S proteasome non-ATPase regulatory subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FAR1 | PF03101 | 50 - 139 | 3.7e-11 | FAR1 DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 533 |
| Acc16I | TGCGCA | 1 cut(s) | 520 |
| AccII | CGCG | 2 cut(s) | 185, 187 |
| AciI | CCGC | 1 cut(s) | 493 |
| AcsI | RAATTY | 2 cut(s) | 79, 386 |
| AcuI | CTGAAG | 1 cut(s) | 90 |
| AgsI | TTSAA | 4 cut(s) | 85, 391, 504, 579 |
| AhlI | ACTAGT | 1 cut(s) | 542 |
| AluBI | AGCT | 1 cut(s) | 609 |
| AluI | AGCT | 1 cut(s) | 609 |
| Alw26I | GTCTC | 2 cut(s) | 308, 422 |
| ApeKI | GCWGC | 2 cut(s) | 98, 335 |
| ApoI | RAATTY | 2 cut(s) | 79, 386 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 80 |
| AspLEI | GCGC | 3 cut(s) | 185, 187, 521 |
| AspS9I | GGNCC | 2 cut(s) | 289, 309 |
| AvaII | GGWCC | 2 cut(s) | 289, 309 |
| BbvI | GCAGC | 2 cut(s) | 85, 347 |
| BccI | CCATC | 2 cut(s) | 141, 579 |
| BcoDI | GTCTC | 2 cut(s) | 308, 422 |
| BcuI | ACTAGT | 1 cut(s) | 542 |
| BfaI | CTAG | 2 cut(s) | 332, 543 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BisI | GCNGC | 2 cut(s) | 99, 336 |
| BlsI | GCNGC | 2 cut(s) | 100, 337 |
| Bme18I | GGWCC | 2 cut(s) | 289, 309 |
| BmgT120I | GGNCC | 2 cut(s) | 289, 309 |
| BmsI | GCATC | 4 cut(s) | 127, 256, 579, 612 |
| Bsa29I | ATCGAT | 1 cut(s) | 451 |
| BsaI | GGTCTC | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 1 cut(s) | 305 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 207, 237 |
| Bse3DI | GCAATG | 1 cut(s) | 495 |
| BseCI | ATCGAT | 1 cut(s) | 451 |
| BseDI | CCNNGG | 1 cut(s) | 305 |
| BseGI | GGATG | 3 cut(s) | 142, 594, 627 |
| BseMI | GCAATG | 1 cut(s) | 495 |
| BsePI | GCGCGC | 1 cut(s) | 183 |
| BseXI | GCAGC | 2 cut(s) | 85, 347 |
| Bsh1236I | CGCG | 2 cut(s) | 185, 187 |
| BshVI | ATCGAT | 1 cut(s) | 451 |
| BslFI | GGGAC | 1 cut(s) | 178 |
| BsmAI | GTCTC | 2 cut(s) | 308, 422 |
| BsmFI | GGGAC | 1 cut(s) | 178 |
| Bso31I | GGTCTC | 1 cut(s) | 308 |
| Bsp143I | GATC | 1 cut(s) | 443 |
| BspACI | CCGC | 1 cut(s) | 493 |
| BspDI | ATCGAT | 1 cut(s) | 451 |
| BspFNI | CGCG | 2 cut(s) | 185, 187 |
| BspHI | TCATGA | 1 cut(s) | 406 |
| BspTNI | GGTCTC | 1 cut(s) | 308 |
| BsrDI | GCAATG | 1 cut(s) | 495 |
| BssECI | CCNNGG | 1 cut(s) | 305 |
| BssHII | GCGCGC | 1 cut(s) | 183 |
| BssMI | GATC | 1 cut(s) | 443 |
| BssT1I | CCWWGG | 1 cut(s) | 305 |
| Bst4CI | ACNGT | 2 cut(s) | 130, 404 |
| Bst6I | CTCTTC | 2 cut(s) | 109, 229 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 516 |
| BstC8I | GCNNGC | 1 cut(s) | 185 |
| BstEII | GGTNACC | 1 cut(s) | 223 |
| BstF5I | GGATG | 3 cut(s) | 142, 594, 627 |
| BstFNI | CGCG | 2 cut(s) | 185, 187 |
| BstHHI | GCGC | 3 cut(s) | 185, 187, 521 |
| BstKTI | GATC | 1 cut(s) | 446 |
| BstMAI | GTCTC | 2 cut(s) | 308, 422 |
| BstMBI | GATC | 1 cut(s) | 443 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 473, 516, 637 |
| BstNSI | RCATGY | 1 cut(s) | 342 |
| BstPI | GGTNACC | 1 cut(s) | 223 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstUI | CGCG | 2 cut(s) | 185, 187 |
| BstV1I | GCAGC | 2 cut(s) | 85, 347 |
| Bsu15I | ATCGAT | 1 cut(s) | 451 |
| BsuTUI | ATCGAT | 1 cut(s) | 451 |
| BtsCI | GGATG | 3 cut(s) | 142, 594, 627 |
| BtsIMutI | CAGTG | 1 cut(s) | 381 |
| Cac8I | GCNNGC | 1 cut(s) | 185 |
| CciI | TCATGA | 1 cut(s) | 406 |
| CfoI | GCGC | 3 cut(s) | 185, 187, 521 |
| Cfr13I | GGNCC | 2 cut(s) | 289, 309 |
| ClaI | ATCGAT | 1 cut(s) | 451 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 526, 561 |
| CviAII | CATG | 4 cut(s) | 293, 339, 407, 479 |
| CviJI | RGCY | 4 cut(s) | 421, 476, 609, 631 |
| CviKI_1 | RGCY | 4 cut(s) | 421, 476, 609, 631 |
| DpnI | GATC | 1 cut(s) | 445 |
| DpnII | GATC | 1 cut(s) | 443 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 533 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 533 |
| Eam1104I | CTCTTC | 2 cut(s) | 109, 229 |
| EarI | CTCTTC | 2 cut(s) | 109, 229 |
| Eco130I | CCWWGG | 1 cut(s) | 305 |
| Eco31I | GGTCTC | 1 cut(s) | 308 |
| Eco47I | GGWCC | 2 cut(s) | 289, 309 |
| Eco57I | CTGAAG | 1 cut(s) | 90 |
| Eco91I | GGTNACC | 1 cut(s) | 223 |
| EcoO65I | GGTNACC | 1 cut(s) | 223 |
| EcoRI | GAATTC | 1 cut(s) | 386 |
| EcoT14I | CCWWGG | 1 cut(s) | 305 |
| ErhI | CCWWGG | 1 cut(s) | 305 |
| FaeI | CATG | 4 cut(s) | 296, 342, 410, 482 |
| FaqI | GGGAC | 1 cut(s) | 178 |
| FatI | CATG | 4 cut(s) | 292, 338, 406, 478 |
| FauNDI | CATATG | 1 cut(s) | 523 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 336 |
| FokI | GGATG | 3 cut(s) | 149, 601, 634 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 336 |
| FspBI | CTAG | 2 cut(s) | 332, 543 |
| FspI | TGCGCA | 1 cut(s) | 520 |
| GlaI | GCGC | 3 cut(s) | 184, 186, 520 |
| GluI | GCNGC | 2 cut(s) | 99, 336 |
| HhaI | GCGC | 3 cut(s) | 185, 187, 521 |
| Hin1II | CATG | 4 cut(s) | 296, 342, 410, 482 |
| Hin6I | GCGC | 3 cut(s) | 183, 185, 519 |
| HinP1I | GCGC | 3 cut(s) | 183, 185, 519 |
| HincII | GTYRAC | 1 cut(s) | 538 |
| HindII | GTYRAC | 1 cut(s) | 538 |
| HindIII | AAGCTT | 1 cut(s) | 607 |
| HinfI | GANTC | 3 cut(s) | 52, 362, 430 |
| Hpy166II | GTNNAC | 1 cut(s) | 538 |
| Hpy188I | TCNGA | 1 cut(s) | 57 |
| Hpy188III | TCNNGA | 3 cut(s) | 251, 391, 407 |
| Hpy8I | GTNNAC | 1 cut(s) | 538 |
| HpyAV | CCTTC | 3 cut(s) | 65, 183, 248 |
| HpyCH4III | ACNGT | 2 cut(s) | 130, 404 |
| HpyCH4V | TGCA | 4 cut(s) | 269, 467, 488, 625 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 473, 516, 637 |
| Hsp92II | CATG | 4 cut(s) | 296, 342, 410, 482 |
| HspAI | GCGC | 3 cut(s) | 183, 185, 519 |
| Kzo9I | GATC | 1 cut(s) | 443 |
| LpnPI | CCDG | 6 cut(s) | 81, 241, 331, 351, 529, 613 |
| Lsp1109I | GCAGC | 2 cut(s) | 85, 347 |
| LweI | GCATC | 4 cut(s) | 127, 256, 579, 612 |
| MaeI | CTAG | 2 cut(s) | 332, 543 |
| MaeIII | GTNAC | 2 cut(s) | 199, 223 |
| MalI | GATC | 1 cut(s) | 445 |
| MboI | GATC | 1 cut(s) | 443 |
| MboII | GAAGA | 2 cut(s) | 126, 246 |
| MfeI | CAATTG | 1 cut(s) | 635 |
| MluCI | AATT | 7 cut(s) | 79, 89, 271, 386, 410, 434, 635 |
| MlyI | GAGTC | 2 cut(s) | 61, 424 |
| MmeI | TCCRAC | 2 cut(s) | 193, 544 |
| MnlI | CCTC | 6 cut(s) | 37, 127, 209, 213, 280, 523 |
| MroXI | GAANNNNTTC | 1 cut(s) | 80 |
| MseI | TTAA | 1 cut(s) | 483 |
| MslI | CAYNNNNRTG | 2 cut(s) | 405, 483 |
| MunI | CAATTG | 1 cut(s) | 635 |
| MvnI | CGCG | 2 cut(s) | 185, 187 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 473, 516, 637 |
| NdeI | CATATG | 1 cut(s) | 523 |
| NdeII | GATC | 1 cut(s) | 443 |
| NlaIII | CATG | 4 cut(s) | 296, 342, 410, 482 |
| NmuCI | GTSAC | 1 cut(s) | 199 |
| NsbI | TGCGCA | 1 cut(s) | 520 |
| NspI | RCATGY | 1 cut(s) | 342 |
| PagI | TCATGA | 1 cut(s) | 406 |
| PauI | GCGCGC | 1 cut(s) | 183 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 448 |
| PdmI | GAANNNNTTC | 1 cut(s) | 80 |
| PfeI | GAWTC | 1 cut(s) | 362 |
| PkrI | GCNGC | 2 cut(s) | 100, 337 |
| PleI | GAGTC | 2 cut(s) | 60, 424 |
| PpsI | GAGTC | 2 cut(s) | 60, 424 |
| PspEI | GGTNACC | 1 cut(s) | 223 |
| PspPI | GGNCC | 2 cut(s) | 289, 309 |
| PteI | GCGCGC | 1 cut(s) | 183 |
| RseI | CAYNNNNRTG | 2 cut(s) | 405, 483 |
| SaqAI | TTAA | 1 cut(s) | 483 |
| SatI | GCNGC | 2 cut(s) | 99, 336 |
| Sau3AI | GATC | 1 cut(s) | 443 |
| Sau96I | GGNCC | 2 cut(s) | 289, 309 |
| SchI | GAGTC | 2 cut(s) | 61, 424 |
| SetI | ASST | 3 cut(s) | 70, 515, 611 |
| SfaNI | GCATC | 4 cut(s) | 127, 256, 579, 612 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| SinI | GGWCC | 2 cut(s) | 289, 309 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 405, 483 |
| SpeI | ACTAGT | 1 cut(s) | 542 |
| Sse9I | AATT | 7 cut(s) | 79, 89, 271, 386, 410, 434, 635 |
| SsiI | CCGC | 1 cut(s) | 493 |
| SspMI | CTAG | 2 cut(s) | 332, 543 |
| StyI | CCWWGG | 1 cut(s) | 305 |
| TaaI | ACNGT | 2 cut(s) | 130, 404 |
| TaqI | TCGA | 2 cut(s) | 442, 451 |
| TaqII | GACCGA | 1 cut(s) | 326 |
| TasI | AATT | 7 cut(s) | 79, 89, 271, 386, 410, 434, 635 |
| TfiI | GAWTC | 1 cut(s) | 362 |
| Tru1I | TTAA | 1 cut(s) | 483 |
| Tru9I | TTAA | 1 cut(s) | 483 |
| TscAI | CASTG | 1 cut(s) | 388 |
| TseFI | GTSAC | 1 cut(s) | 199 |
| TseI | GCWGC | 2 cut(s) | 98, 335 |
| Tsp45I | GTSAC | 1 cut(s) | 199 |
| TspDTI | ATGAA | 3 cut(s) | 51, 423, 427 |
| TspRI | CASTG | 1 cut(s) | 388 |
| VpaK11BI | GGWCC | 2 cut(s) | 289, 309 |
| XapI | RAATTY | 2 cut(s) | 79, 386 |
| XceI | RCATGY | 1 cut(s) | 342 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 235 |
| XmnI | GAANNNNTTC | 1 cut(s) | 80 |
| XspI | CTAG | 2 cut(s) | 332, 543 |