FvH4_6g52260

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000064
Physical Location & Seq
Forward (+)
38547496 .. 38548827
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52260.t1

Sequence Viewer

Length: 1332 bp
ATGAGAAAGCGTGAAACAGACTACGGGGTTGCTAGTTCAATTGCAAAGAAGCACAAGTCTGCAATGGATTCTGGGGATTCTAGTTATTCGATCGCAAAGAAGAAGCCGGAAACTGAAGTAGAAGTCTCTTCAATCCCGGAAGGGAACAACCCTCTGGCAAGTCTTCTTCCTCTAGATGTTTCCTTTATAATTCTTGATAAGTTGTTCGAATCCACAGACCATCTTTCTTTCGCTGGCGTTTGTAAATACTGGTGCTCTATTTCAAGAAACTATAATGTTGCAACTCAACGCTGGCACAAGAAGGGCAAGATGCTTCCCCTTTTCTTGGTTAGTACTGAATCCGAACGAAAAGGAAAGACTAGCAACCATGAACTAGAAGCATATAACGTTTCTGGTGGACATAGATGCAAAGATAATATTCATTTTCCGGTCACTCATGGGAAAAGGTGTTGTGGTTCTAGCCATGGTTGGTTGGCCATATTCGATGTAGAAGGCAAATGTTTCTCCATAACTCTGGTACACCCTTTCCAAAAATCAGTGGATCCAATTAAACTCCCTCTATTGGATTTCATGACGAACAAGCTGCAAGAGTACATCCGAAAGGTTATCTTGTCATCCGATCCCATCTTGAATCCGGATAGTTATGTTGTTGTTGTACTCTACAGTGGTTACGGTGGTTCAAAGTTGGCTTTCATTAAAGGAGGACAACAACAATGGACTTATACCGATAGGCGTCGAACGTGCCTTAAGGATGTCACATTTTACAGAAACCAAGTTTATGCAGTTGTTGGCGGAAGCGATGGAAAGGAAAGAATCATGTCGTTTGATGTTCATAGTTGTACTAAACTTTCAAAGCCACCAAAAGCAATCAATCGTACGCCTAATGATGTGCCAAAAATAAGGGCTAACTATTCGTATCTTGTGGAGTCAGCCGTGGGAGATCACCTGTGGTATGTGAGAAGGCTAATTTCTTATGCATCGAGAAACAAAAAGCACATTGAGAGGTTTAGGGTTTACAAGGTGGTGTTCGATGACAAAGATGGATCGGTTGTGGAACAAGTAGAGGTACATAGCATCGGAGATGAGGCTTTGTTTGTGGGTGCGTCGGATTCGATATCCGTCTTGGCTTCAAGCTTTCCTGGGTGTAAGCCAAATTCTATATACTATACCACTGAGGAGCCCTATAACTTTGAGTATCCGGACCACGAAACCTATCATATCTCTAGTCTAGATGATGGAACCATCAAAGAGTACGAATGGAATTATCGACTTTTACCTTCAGCAATTCCATGTGGAGTTTGGATTCTACCAATGTTTAAGGGACTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

444

Amino Acids

50.2

Weight (kDa)

8.69

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 139 - 396 8e-46 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccIII TCCGGA 2 cut(s) 634, 1198
AciI CCGC 1 cut(s) 792
AclI AACGTT 1 cut(s) 387
AclWI GGATC 4 cut(s) 536, 549, 614, 1051
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 1153
AcuI CTGAAG 2 cut(s) 135, 1263
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 8 cut(s) 334, 519, 593, 657, 841, 877, 1068, 1253
AfiI CCNNNNNNNGG 2 cut(s) 325, 562
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 7 cut(s) 39, 132, 264, 631, 681, 852, 1131
AjnI CCWGG 1 cut(s) 1138
AluBI AGCT 2 cut(s) 583, 1134
AluI AGCT 2 cut(s) 583, 1134
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 4 cut(s) 536, 549, 614, 1051
Aor13HI TCCGGA 2 cut(s) 634, 1198
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 583
ApoI RAATTY 1 cut(s) 1153
AspS9I GGNCC 1 cut(s) 1201
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 935
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 1201
BalI TGGCCA 1 cut(s) 476
BamHI GGATCC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 1182
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 570
BccI CCATC 6 cut(s) 228, 632, 794, 1034, 1229, 1250
BceAI ACGGC 1 cut(s) 917
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 1 cut(s) 1140
BciVI GTATCC 1 cut(s) 1206
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 9 cut(s) 33, 81, 173, 360, 374, 459, 1224, 1229, 1330
BfmI CTRYAG 1 cut(s) 661
BfrI CTTAAG 1 cut(s) 746
BfuI GTATCC 1 cut(s) 1206
BisI GCNGC 1 cut(s) 584
BlsI GCNGC 1 cut(s) 585
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 2 cut(s) 137, 1140
Bme18I GGWCC 1 cut(s) 1201
BmgT120I GGNCC 1 cut(s) 1201
BmiI GGNNCC 3 cut(s) 543, 1179, 1240
BmrFI CCNGG 2 cut(s) 137, 1140
BmsI GCATC 4 cut(s) 300, 395, 986, 1083
BpiI GAAGAC 1 cut(s) 155
Bpu14I TTCGAA 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 733
BsaJI CCNNGG 3 cut(s) 463, 933, 1139
BsaWI WCCGGW 3 cut(s) 427, 634, 1198
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 562
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 69
BseAI TCCGGA 2 cut(s) 634, 1198
BseBI CCWGG 1 cut(s) 1140
BseDI CCNNGG 3 cut(s) 463, 933, 1139
BseGI GGATG 3 cut(s) 594, 614, 757
BseLI CCNNNNNNNGG 2 cut(s) 325, 562
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 1164
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 1190
BseXI GCAGC 1 cut(s) 570
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 5 cut(s) 107, 137, 428, 635, 1199
BsiWI CGTACG 1 cut(s) 875
BslI CCNNNNNNNGG 2 cut(s) 325, 562
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 257, 1182
Bsp13I TCCGGA 2 cut(s) 634, 1198
Bsp143I GATC 5 cut(s) 90, 541, 619, 940, 1043
Bsp19I CCATGG 1 cut(s) 463
BspACI CCGC 1 cut(s) 792
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 1 cut(s) 1165
BspEI TCCGGA 2 cut(s) 634, 1198
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 3 cut(s) 543, 1179, 1240
BspPI GGATC 4 cut(s) 536, 549, 614, 1051
BspT104I TTCGAA 1 cut(s) 207
BspTI CTTAAG 1 cut(s) 746
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 463, 933, 1139
BssMI GATC 5 cut(s) 90, 541, 619, 940, 1043
BssNI GRCGYC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 1140
Bst4CI ACNGT 2 cut(s) 665, 674
Bst6I CTCTTC 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 733
BstAFI CTTAAG 1 cut(s) 746
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 235, 293
BstDEI CTNAG 1 cut(s) 1173
BstDSI CCRYGG 2 cut(s) 463, 933
BstF5I GGATG 3 cut(s) 594, 614, 757
BstKTI GATC 5 cut(s) 93, 544, 622, 943, 1046
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 5 cut(s) 90, 541, 619, 940, 1043
BstMCI CGRYCG 1 cut(s) 93
BstNI CCWGG 1 cut(s) 1140
BstSCI CCNGG 2 cut(s) 135, 1138
BstSFI CTRYAG 1 cut(s) 661
BstV1I GCAGC 1 cut(s) 570
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 1 cut(s) 541
BsuI GTATCC 1 cut(s) 1206
BsuRI GGCC 1 cut(s) 476
BtgI CCRYGG 2 cut(s) 463, 933
BtgZI GCGATG 1 cut(s) 813
BtsCI GGATG 3 cut(s) 594, 614, 757
BtsIMutI CAGTG 3 cut(s) 543, 670, 1170
Cac8I GCNNGC 2 cut(s) 235, 293
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 1201
CseI GACGC 2 cut(s) 722, 1092
Csp6I GTAC 8 cut(s) 333, 518, 592, 656, 840, 876, 1067, 1252
CviAII CATG 6 cut(s) 368, 437, 464, 571, 817, 1290
CviQI GTAC 8 cut(s) 333, 518, 592, 656, 840, 876, 1067, 1252
DdeI CTNAG 1 cut(s) 1173
DpnI GATC 5 cut(s) 92, 543, 621, 942, 1045
DpnII GATC 5 cut(s) 90, 541, 619, 940, 1043
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 1182
Eco32I GATATC 1 cut(s) 1116
Eco47I GGWCC 1 cut(s) 1201
Eco57I CTGAAG 2 cut(s) 135, 1263
EcoRII CCWGG 1 cut(s) 1138
EcoRV GATATC 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 979
EcoT38I GRGCYC 1 cut(s) 1182
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 6 cut(s) 371, 440, 467, 574, 820, 1293
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 6 cut(s) 367, 436, 463, 570, 816, 1289
Fnu4HI GCNGC 1 cut(s) 584
FokI GGATG 3 cut(s) 581, 601, 764
FriOI GRGCYC 1 cut(s) 1182
Fsp4HI GCNGC 1 cut(s) 584
FspBI CTAG 9 cut(s) 33, 81, 173, 360, 374, 459, 1224, 1229, 1330
GluI GCNGC 1 cut(s) 584
HaeIII GGCC 1 cut(s) 476
HapII CCGG 5 cut(s) 107, 137, 428, 635, 1199
HgaI GACGC 2 cut(s) 722, 1092
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 6 cut(s) 371, 440, 467, 574, 820, 1293
HindIII AAGCTT 1 cut(s) 1132
HinfI GANTC 9 cut(s) 68, 77, 209, 338, 631, 813, 926, 1109, 1303
HpaII CCGG 5 cut(s) 107, 137, 428, 635, 1199
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 3 cut(s) 398, 520, 1015
Hpy188I TCNGA 5 cut(s) 343, 599, 619, 1079, 1108
Hpy188III TCNNGA 9 cut(s) 173, 194, 264, 571, 628, 635, 981, 1199, 1229
Hpy8I GTNNAC 3 cut(s) 398, 520, 1015
Hpy99I CGWCG 2 cut(s) 738, 1108
HpyAV CCTTC 5 cut(s) 134, 295, 485, 954, 1287
HpyCH4III ACNGT 2 cut(s) 665, 674
HpyCH4IV ACGT 2 cut(s) 387, 740
HpyCH4V TGCA 7 cut(s) 44, 62, 281, 408, 586, 782, 977
HpyF3I CTNAG 1 cut(s) 1173
HpySE526I ACGT 2 cut(s) 387, 740
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 6 cut(s) 371, 440, 467, 574, 820, 1293
Kpn2I TCCGGA 2 cut(s) 634, 1198
Kzo9I GATC 5 cut(s) 90, 541, 619, 940, 1043
LmnI GCTCC 1 cut(s) 1177
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 4 cut(s) 300, 395, 986, 1083
MaeI CTAG 9 cut(s) 33, 81, 173, 360, 374, 459, 1224, 1229, 1330
MaeII ACGT 2 cut(s) 387, 740
MaeIII GTNAC 3 cut(s) 430, 668, 754
MalI GATC 5 cut(s) 92, 543, 621, 942, 1045
MboI GATC 5 cut(s) 90, 541, 619, 940, 1043
MboII GAAGA 4 cut(s) 112, 120, 155, 158
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 2 cut(s) 257, 1182
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 7 cut(s) 39, 189, 546, 966, 1153, 1261, 1284
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 1 cut(s) 1086
MnlI CCTC 8 cut(s) 162, 180, 567, 695, 996, 1057, 1078, 1168
Mox20I TGGCCA 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 979
MroI TCCGGA 2 cut(s) 634, 1198
MscI TGGCCA 1 cut(s) 476
MseI TTAA 4 cut(s) 549, 696, 747, 1317
Msp20I TGGCCA 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 5 cut(s) 107, 137, 428, 635, 1199
MspR9I CCNGG 2 cut(s) 137, 1140
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 1140
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 463
NdeII GATC 5 cut(s) 90, 541, 619, 940, 1043
NlaIII CATG 6 cut(s) 371, 440, 467, 574, 820, 1293
NlaIV GGNNCC 3 cut(s) 543, 1179, 1240
NmuCI GTSAC 2 cut(s) 430, 754
NsiI ATGCAT 1 cut(s) 979
NspV TTCGAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 570
PfeI GAWTC 8 cut(s) 68, 77, 209, 338, 631, 813, 1109, 1303
Pfl23II CGTACG 1 cut(s) 875
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 1 cut(s) 585
Ple19I CGATCG 1 cut(s) 93
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
PsiI TTATAA 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 1138
PspGI CCWGG 1 cut(s) 1138
PspLI CGTACG 1 cut(s) 875
PspN4I GGNNCC 3 cut(s) 543, 1179, 1240
PspPI GGNCC 1 cut(s) 1201
PsuI RGATCY 1 cut(s) 541
PvuI CGATCG 1 cut(s) 93
RsaI GTAC 8 cut(s) 334, 519, 593, 657, 841, 877, 1068, 1253
RsaNI GTAC 8 cut(s) 333, 518, 592, 656, 840, 876, 1067, 1252
SaqAI TTAA 4 cut(s) 549, 696, 747, 1317
SatI GCNGC 1 cut(s) 584
Sau3AI GATC 5 cut(s) 90, 541, 619, 940, 1043
Sau96I GGNCC 1 cut(s) 1201
ScaI AGTACT 1 cut(s) 334
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 2 cut(s) 137, 1140
SduI GDGCHC 2 cut(s) 257, 1182
SfaNI GCATC 4 cut(s) 300, 395, 986, 1083
SfcI CTRYAG 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 1201
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 7 cut(s) 39, 189, 546, 966, 1153, 1261, 1284
SsiI CCGC 1 cut(s) 792
SspI AATATT 1 cut(s) 418
SspMI CTAG 9 cut(s) 33, 81, 173, 360, 374, 459, 1224, 1229, 1330
StyD4I CCNGG 2 cut(s) 135, 1138
StyI CCWWGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 665, 674
TaiI ACGT 2 cut(s) 390, 743
TaqI TCGA 8 cut(s) 89, 207, 483, 736, 980, 1029, 1112, 1267
TasI AATT 7 cut(s) 39, 189, 546, 966, 1153, 1261, 1284
TatI WGTACW 4 cut(s) 332, 591, 655, 839
TfiI GAWTC 8 cut(s) 68, 77, 209, 338, 631, 813, 1109, 1303
Tru1I TTAA 4 cut(s) 549, 696, 747, 1317
Tru9I TTAA 4 cut(s) 549, 696, 747, 1317
TscAI CASTG 3 cut(s) 543, 670, 1177
TseFI GTSAC 2 cut(s) 430, 754
TseI GCWGC 1 cut(s) 583
Tsp45I GTSAC 2 cut(s) 430, 754
TspDTI ATGAA 5 cut(s) 384, 410, 559, 682, 821
TspGWI ACGGA 1 cut(s) 1108
TspRI CASTG 3 cut(s) 543, 670, 1177
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 1201
XapI RAATTY 1 cut(s) 1153
XbaI TCTAGA 2 cut(s) 172, 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 1296
XspI CTAG 9 cut(s) 33, 81, 173, 360, 374, 459, 1224, 1229, 1330
ZrmI AGTACT 1 cut(s) 334
Zsp2I ATGCAT 1 cut(s) 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.