Rorug07G0114600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000064
Physical Location & Seq
Reverse (-)
8929796 .. 8932586
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0114600.1

Sequence Viewer

Length: 1110 bp
ATGGAAACCAATCATCATACCGCAACAACCAACATCTCCGACGACCTCTACGGCCTCTCTCCGGCAACCTCACCCACCAAATCCGGACCTCGAGAGCTACCCGAACCCGATATCCACATCCTCACCCGCGATGCTGTTCGCATTCCAGCCCACGCTAGCATTCTGGCCTCCGTGTCGCCGGTGCTGGAAAACATAATAGATCGACCACGTAAGCACCGCAGCTCCGAAAGAGTCATCCCCATCCTCGGCGTCCCAAACGACGCCGTCGTCGCCTTCACCCGCTTCCTCTACTCCTCAAGGTGCACGGAAGAGCACATGGAGAAGTACGCGATCCACCTACTGGCGTTGTCCCACGTGTACTTGGTTCCCCAGCTGAAGCAGAGATGCACCAAGGAGCTGGGTCAACGTTTGAGCGTTGACAATGTCGTCGACGTGCTCCAACTGGCCAGGCTCTGCGACGCAGCGGATCTCTACCTCAAGTGCATGAAGTTGGTTGCCAATCACTTCAAGGCTGTGGAGGAAACTGAAGGCTGGAAATTTGTTCAAGACCATGATCCTTACCTCGAACTCGACATTTTGCAGTTCATCGATGAAACTGAATCGAGGAAGAAGAGGACAAGGAGGCATAGGGAGGAACAGAGGTTGTATCTACAGCTAAGTGAGGCAATGGAGTGCTTGGAGCACATATGTACTGAAGGGTGCACTAGTGTCGGGCCGTATGACATGGAGCCGGGTCAGAAGAGAGGCCCGTGTAGCAAGTTCGGCACATGTCAAGGGCTGCAGCACCTGTTTCAGCACTTCGCCACTTGCAAGAGGAGAGTGAACGGAGGTTGCTTGCGTTGCAAGCGGATGTGGCAGCTTCTTAAGCTTCACTCGTCGATGTGTGACCAATCGGATTCTTGCCGAGTTCCCCTTTGCAGGCAGTTCAAGTTGAAATTGATACACGAGAAGAAGAGAGATGATGCAAGGTGGAAACTGCTGGTGAGGAAGGTTGTATCAGCCAAAGCCATATCTTCTCTGGCTCTGGCTAAGAGGAAGAGAGAGGAGGATCAACTCGGCGAAACCAGAAGCCACTGCGGTGATCATGGAATTGGAAGCTTCAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

369

Amino Acids

42.24

Weight (kDa)

8.86

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 37 - 135 3.3e-10 BTB/POZ domain
zf-TAZ PF02135 220 - 306 1.2e-11 TAZ zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 266, 425
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 1 cut(s) 429
AccII CGCG 2 cut(s) 129, 329
AccIII TCCGGA 1 cut(s) 83
AciI CCGC 7 cut(s) 21, 127, 217, 280, 464, 847, 1077
AclI AACGTT 1 cut(s) 406
AclWI GGATC 4 cut(s) 325, 474, 548, 1056
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 4 cut(s) 395, 546, 714, 1084
AcvI CACGTG 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 249, 261
AfaI GTAC 3 cut(s) 326, 359, 691
AfiI CCNNNNNNNGG 4 cut(s) 61, 245, 340, 918
AflII CTTAAG 1 cut(s) 863
AflIII ACRYGT 2 cut(s) 354, 767
AgsI TTSAA 4 cut(s) 508, 545, 928, 934
AhlI ACTAGT 1 cut(s) 704
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 1 cut(s) 446
AleI CACNNNNGTG 1 cut(s) 1077
AloI GAACNNNNNNTCC 2 cut(s) 96, 128
AluBI AGCT 8 cut(s) 97, 222, 373, 397, 655, 859, 868, 1098
AluI AGCT 8 cut(s) 97, 222, 373, 397, 655, 859, 868, 1098
Alw21I GWGCWC 5 cut(s) 305, 315, 438, 684, 704
Alw44I GTGCAC 2 cut(s) 301, 700
AlwI GGATC 4 cut(s) 325, 474, 548, 1056
AlwNI CAGNNNCTG 2 cut(s) 453, 787
Ama87I CYCGRG 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 83
AoxI GGCC 5 cut(s) 52, 165, 444, 713, 745
ApaLI GTGCAC 2 cut(s) 301, 700
ApeKI GCWGC 5 cut(s) 219, 461, 778, 781, 856
ApoI RAATTY 1 cut(s) 536
AspS9I GGNCC 3 cut(s) 86, 713, 746
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 5 cut(s) 63, 115, 268, 994, 1091
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 86
BaeGI GKGCMC 2 cut(s) 305, 704
BalI TGGCCA 1 cut(s) 446
BauI CACGAG 1 cut(s) 944
BbrPI CACGTG 1 cut(s) 355
Bbv12I GWGCWC 5 cut(s) 305, 315, 438, 684, 704
BbvI GCAGC 5 cut(s) 231, 473, 765, 793, 868
BccI CCATC 1 cut(s) 248
BceAI ACGGC 3 cut(s) 67, 248, 700
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 1 cut(s) 448
BclI TGATCA 1 cut(s) 1081
BcnI CCSGG 1 cut(s) 732
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 2 cut(s) 156, 705
BfmI CTRYAG 2 cut(s) 650, 779
BfrI CTTAAG 1 cut(s) 863
BisI GCNGC 5 cut(s) 220, 462, 779, 782, 857
BlsI GCNGC 5 cut(s) 221, 463, 780, 783, 858
Bme1390I CCNGG 2 cut(s) 448, 732
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 3 cut(s) 86, 713, 746
BmiI GGNNCC 2 cut(s) 366, 729
BmrFI CCNGG 2 cut(s) 448, 732
BmsI GCATC 3 cut(s) 121, 374, 952
BmtI GCTAGC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 280, 461
BpuMI CCSGG 1 cut(s) 732
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 2 cut(s) 209, 355
BsaHI GRCGYC 2 cut(s) 249, 261
BsaJI CCNNGG 2 cut(s) 244, 390
BsaWI WCCGGW 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 245, 340, 918
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 345, 447
Bse3DI GCAATG 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 83
BseBI CCWGG 1 cut(s) 448
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 244, 390
BseGI GGATG 4 cut(s) 117, 234, 240, 855
BseLI CCNNNNNNNGG 4 cut(s) 61, 245, 340, 918
BseMI GCAATG 1 cut(s) 672
BseNI ACTGG 2 cut(s) 345, 447
BseRI GAGGAG 3 cut(s) 283, 829, 1058
BseSI GKGCMC 2 cut(s) 305, 704
BseXI GCAGC 5 cut(s) 231, 473, 765, 793, 868
BseYI CCCAGC 2 cut(s) 369, 397
Bsh1236I CGCG 2 cut(s) 129, 329
BshFI GGCC 5 cut(s) 54, 167, 446, 715, 747
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 5 cut(s) 305, 315, 438, 684, 704
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 4 cut(s) 62, 84, 179, 731
BslFI GGGAC 2 cut(s) 236, 334
BslI CCNNNNNNNGG 4 cut(s) 61, 245, 340, 918
BsmFI GGGAC 2 cut(s) 236, 334
BsmI GAATGC 2 cut(s) 141, 159
BsnI GGCC 5 cut(s) 54, 167, 446, 715, 747
BsoBI CYCGRG 1 cut(s) 90
Bsp1286I GDGCHC 5 cut(s) 305, 315, 438, 684, 704
Bsp13I TCCGGA 1 cut(s) 83
Bsp143I GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
BspACI CCGC 7 cut(s) 21, 127, 217, 280, 464, 847, 1077
BspANI GGCC 5 cut(s) 54, 167, 446, 715, 747
BspDI ATCGAT 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 83
BspFNI CGCG 2 cut(s) 129, 329
BspLI GGNNCC 2 cut(s) 366, 729
BspMAI CTGCAG 1 cut(s) 783
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 4 cut(s) 325, 474, 548, 1056
BspQI GCTCTTC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 863
BsrDI GCAATG 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 2 cut(s) 345, 447
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 244, 390
BssMI GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
BssNI GRCGYC 2 cut(s) 249, 261
BssSI CACGAG 1 cut(s) 944
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 944
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 1107
Bst6I CTCTTC 5 cut(s) 303, 605, 734, 947, 1031
BstACI GRCGYC 2 cut(s) 249, 261
BstAFI CTTAAG 1 cut(s) 863
BstBAI YACGTR 2 cut(s) 209, 355
BstC8I GCNNGC 4 cut(s) 157, 836, 845, 920
BstDEI CTNAG 2 cut(s) 656, 1029
BstF5I GGATG 4 cut(s) 117, 234, 240, 855
BstFNI CGCG 2 cut(s) 129, 329
BstKTI GATC 6 cut(s) 202, 333, 469, 556, 1051, 1084
BstMBI GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
BstMWI GCNNNNNNNGC 7 cut(s) 269, 753, 762, 840, 844, 853, 865
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 771
BstSCI CCNGG 2 cut(s) 446, 730
BstSFI CTRYAG 2 cut(s) 650, 779
BstSLI GKGCMC 2 cut(s) 305, 704
BstUI CGCG 2 cut(s) 129, 329
BstV1I GCAGC 5 cut(s) 231, 473, 765, 793, 868
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 588
BsuRI GGCC 5 cut(s) 54, 167, 446, 715, 747
BsuTUI ATCGAT 1 cut(s) 588
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 4 cut(s) 117, 234, 240, 855
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 1 cut(s) 1072
Cac8I GCNNGC 4 cut(s) 157, 836, 845, 920
CaiI CAGNNNCTG 2 cut(s) 453, 787
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 86, 713, 746
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 3 cut(s) 238, 269, 467
Csp6I GTAC 3 cut(s) 325, 358, 690
CviAII CATG 6 cut(s) 316, 484, 551, 724, 768, 1085
CviQI GTAC 3 cut(s) 325, 358, 690
DdeI CTNAG 2 cut(s) 656, 1029
DpnI GATC 6 cut(s) 201, 332, 468, 555, 1050, 1083
DpnII GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
DrdI GACNNNNNNGTC 2 cut(s) 266, 425
DseDI GACNNNNNNGTC 2 cut(s) 266, 425
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 5 cut(s) 303, 605, 734, 947, 1031
EarI CTCTTC 5 cut(s) 303, 605, 734, 947, 1031
Eco130I CCWWGG 1 cut(s) 390
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 4 cut(s) 395, 546, 714, 1084
Eco72I CACGTG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 446
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 6 cut(s) 319, 487, 554, 727, 771, 1088
FaqI GGGAC 2 cut(s) 236, 334
FatI CATG 6 cut(s) 315, 483, 550, 723, 767, 1084
FauI CCCGC 2 cut(s) 134, 287
FauNDI CATATG 1 cut(s) 686
FbaI TGATCA 1 cut(s) 1081
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 5 cut(s) 220, 462, 779, 782, 857
FokI GGATG 4 cut(s) 104, 221, 227, 862
Fsp4HI GCNGC 5 cut(s) 220, 462, 779, 782, 857
FspBI CTAG 2 cut(s) 156, 705
GluI GCNGC 5 cut(s) 220, 462, 779, 782, 857
GsaI CCCAGC 2 cut(s) 373, 401
HaeIII GGCC 5 cut(s) 54, 167, 446, 715, 747
HapII CCGG 4 cut(s) 62, 84, 179, 731
HgaI GACGC 3 cut(s) 238, 269, 467
Hin1I GRCGYC 2 cut(s) 249, 261
Hin1II CATG 6 cut(s) 319, 487, 554, 727, 771, 1088
HincII GTYRAC 3 cut(s) 404, 418, 430
HindII GTYRAC 3 cut(s) 404, 418, 430
HindIII AAGCTT 2 cut(s) 866, 1096
HinfI GANTC 3 cut(s) 231, 599, 896
HpaII CCGG 4 cut(s) 62, 84, 179, 731
HphI GGTGA 5 cut(s) 63, 115, 268, 994, 1091
Hpy166II GTNNAC 7 cut(s) 303, 358, 404, 418, 430, 702, 823
Hpy188I TCNGA 5 cut(s) 40, 226, 738, 895, 1103
Hpy188III TCNNGA 3 cut(s) 84, 92, 545
Hpy8I GTNNAC 7 cut(s) 303, 358, 404, 418, 430, 702, 823
Hpy99I CGWCG 8 cut(s) 44, 263, 269, 272, 431, 434, 461, 880
HpyAV CCTTC 4 cut(s) 283, 521, 689, 982
HpyCH4III ACNGT 1 cut(s) 1107
HpyCH4IV ACGT 4 cut(s) 208, 354, 406, 432
HpyF10VI GCNNNNNNNGC 7 cut(s) 269, 753, 762, 840, 844, 853, 865
HpyF3I CTNAG 2 cut(s) 656, 1029
HpySE526I ACGT 4 cut(s) 208, 354, 406, 432
Hsp92I GRCGYC 2 cut(s) 249, 261
Hsp92II CATG 6 cut(s) 319, 487, 554, 727, 771, 1088
Kpn2I TCCGGA 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 5 cut(s) 227, 394, 441, 679, 727
Lsp1109I GCAGC 5 cut(s) 231, 473, 765, 793, 868
LweI GCATC 3 cut(s) 121, 374, 952
MaeI CTAG 2 cut(s) 156, 705
MaeII ACGT 4 cut(s) 208, 354, 406, 432
MaeIII GTNAC 1 cut(s) 884
MalI GATC 6 cut(s) 201, 332, 468, 555, 1050, 1083
MboI GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
MboII GAAGA 8 cut(s) 320, 619, 622, 751, 961, 964, 1005, 1048
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 5 cut(s) 305, 315, 438, 684, 704
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 3 cut(s) 536, 935, 1089
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 2 cut(s) 63, 463
Mox20I TGGCCA 1 cut(s) 446
MroI TCCGGA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 446
MseI TTAA 1 cut(s) 864
MslI CAYNNNNRTG 1 cut(s) 1077
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 373, 464
MspCI CTTAAG 1 cut(s) 863
MspI CCGG 4 cut(s) 62, 84, 179, 731
MspR9I CCNGG 2 cut(s) 448, 732
Mva1269I GAATGC 2 cut(s) 141, 159
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 2 cut(s) 129, 329
MwoI GCNNNNNNNGC 7 cut(s) 269, 753, 762, 840, 844, 853, 865
NciI CCSGG 1 cut(s) 732
NdeI CATATG 1 cut(s) 686
NdeII GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 6 cut(s) 319, 487, 554, 727, 771, 1088
NlaIV GGNNCC 2 cut(s) 366, 729
NmeAIII GCCGAG 3 cut(s) 225, 929, 1035
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 1 cut(s) 771
OliI CACNNNNGTG 1 cut(s) 1077
PaeR7I CTCGAG 1 cut(s) 90
PciI ACATGT 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PctI GAATGC 2 cut(s) 141, 159
PfeI GAWTC 2 cut(s) 599, 896
PflFI GACNNNGTC 2 cut(s) 263, 422
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 221, 463, 780, 783, 858
PleI GAGTC 1 cut(s) 239
PmaCI CACGTG 1 cut(s) 355
PmlI CACGTG 1 cut(s) 355
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 2 cut(s) 209, 355
PscI ACATGT 1 cut(s) 767
Psp1406I AACGTT 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 446
PspCI CACGTG 1 cut(s) 355
PspFI CCCAGC 2 cut(s) 369, 397
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 366, 729
PspPI GGNCC 3 cut(s) 86, 713, 746
PstI CTGCAG 1 cut(s) 783
PstNI CAGNNNCTG 2 cut(s) 453, 787
PsuI RGATCY 1 cut(s) 466
PsyI GACNNNGTC 2 cut(s) 263, 422
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 3 cut(s) 326, 359, 691
RsaNI GTAC 3 cut(s) 325, 358, 690
RseI CAYNNNNRTG 1 cut(s) 1077
SalI GTCGAC 1 cut(s) 428
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 864
SatI GCNGC 5 cut(s) 220, 462, 779, 782, 857
Sau3AI GATC 6 cut(s) 199, 330, 466, 553, 1048, 1081
Sau96I GGNCC 3 cut(s) 86, 713, 746
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 2 cut(s) 448, 732
SduI GDGCHC 5 cut(s) 305, 315, 438, 684, 704
SfaNI GCATC 3 cut(s) 121, 374, 952
SfcI CTRYAG 2 cut(s) 650, 779
Sfr274I CTCGAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 178
SgrDI CGTCGACG 1 cut(s) 428
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 1077
SmlI CTYRAG 4 cut(s) 90, 295, 476, 863
SmoI CTYRAG 4 cut(s) 90, 295, 476, 863
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 3 cut(s) 536, 935, 1089
SsiI CCGC 7 cut(s) 21, 127, 217, 280, 464, 847, 1077
SspMI CTAG 2 cut(s) 156, 705
StyD4I CCNGG 2 cut(s) 446, 730
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 1107
TaiI ACGT 4 cut(s) 211, 357, 409, 435
TaqI TCGA 8 cut(s) 91, 202, 429, 564, 570, 588, 602, 878
TasI AATT 3 cut(s) 536, 935, 1089
TatI WGTACW 2 cut(s) 357, 689
TfiI GAWTC 2 cut(s) 599, 896
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 1 cut(s) 1079
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 5 cut(s) 219, 461, 778, 781, 856
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 3 cut(s) 500, 574, 606
TspGWI ACGGA 3 cut(s) 160, 320, 840
TspRI CASTG 1 cut(s) 1079
Tth111I GACNNNGTC 2 cut(s) 263, 422
Van91I CCANNNNNTGG 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 863
VneI GTGCAC 2 cut(s) 301, 700
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XhoI CTCGAG 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 156, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.