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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 343 |
| AcoI | YGGCCR | 1 cut(s) | 389 |
| AcsI | RAATTY | 2 cut(s) | 549, 649 |
| AcvI | CACGTG | 1 cut(s) | 618 |
| AcyI | GRCGYC | 1 cut(s) | 340 |
| AdeI | CACNNNGTG | 1 cut(s) | 618 |
| AfaI | GTAC | 6 cut(s) | 72, 189, 309, 321, 371, 381 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 266, 398, 630, 717, 718 |
| AflIII | ACRYGT | 3 cut(s) | 322, 376, 617 |
| AgsI | TTSAA | 1 cut(s) | 584 |
| AjnI | CCWGG | 2 cut(s) | 259, 418 |
| Alw26I | GTCTC | 1 cut(s) | 331 |
| Ama87I | CYCGRG | 1 cut(s) | 74 |
| AoxI | GGCC | 4 cut(s) | 300, 389, 487, 632 |
| ApaI | GGGCCC | 1 cut(s) | 491 |
| ApoI | RAATTY | 2 cut(s) | 549, 649 |
| AspLEI | GCGC | 1 cut(s) | 353 |
| AspS9I | GGNCC | 5 cut(s) | 257, 300, 487, 488, 509 |
| AsuHPI | GGTGA | 1 cut(s) | 736 |
| AvaI | CYCGRG | 1 cut(s) | 74 |
| AvaII | GGWCC | 2 cut(s) | 257, 509 |
| BaeGI | GKGCMC | 1 cut(s) | 491 |
| BalI | TGGCCA | 1 cut(s) | 391 |
| BanII | GRGCYC | 1 cut(s) | 491 |
| BbrPI | CACGTG | 1 cut(s) | 618 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BccI | CCATC | 2 cut(s) | 265, 415 |
| BceAI | ACGGC | 2 cut(s) | 643, 721 |
| BciT130I | CCWGG | 2 cut(s) | 261, 420 |
| BciVI | GTATCC | 1 cut(s) | 395 |
| BclI | TGATCA | 1 cut(s) | 40 |
| BcoDI | GTCTC | 1 cut(s) | 331 |
| BfaI | CTAG | 1 cut(s) | 225 |
| BfoI | RGCGCY | 1 cut(s) | 354 |
| BfuI | GTATCC | 1 cut(s) | 395 |
| Bme1390I | CCNGG | 2 cut(s) | 261, 420 |
| Bme18I | GGWCC | 2 cut(s) | 257, 509 |
| BmeT110I | CYCGRG | 1 cut(s) | 74 |
| BmgT120I | GGNCC | 5 cut(s) | 257, 300, 487, 488, 509 |
| BmiI | GGNNCC | 3 cut(s) | 488, 489, 510 |
| BmrFI | CCNGG | 2 cut(s) | 261, 420 |
| BmsI | GCATC | 1 cut(s) | 9 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 89, 121 |
| BpuEI | CTTGAG | 1 cut(s) | 229 |
| BsaAI | YACGTR | 3 cut(s) | 323, 379, 618 |
| BsaBI | GATNNNNATC | 1 cut(s) | 406 |
| BsaHI | GRCGYC | 1 cut(s) | 340 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 41, 71, 134, 164, 512, 542, 666, 696 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 266, 398, 630, 717, 718 |
| Bse1I | ACTGG | 1 cut(s) | 287 |
| Bse8I | GATNNNNATC | 1 cut(s) | 406 |
| BseBI | CCWGG | 2 cut(s) | 261, 420 |
| BseGI | GGATG | 2 cut(s) | 276, 504 |
| BseJI | GATNNNNATC | 1 cut(s) | 406 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 266, 398, 630, 717, 718 |
| BseNI | ACTGG | 1 cut(s) | 287 |
| BseRI | GAGGAG | 3 cut(s) | 29, 62, 443 |
| BseSI | GKGCMC | 1 cut(s) | 491 |
| BseYI | CCCAGC | 1 cut(s) | 717 |
| BshFI | GGCC | 4 cut(s) | 302, 391, 489, 634 |
| BsiHKCI | CYCGRG | 1 cut(s) | 74 |
| BslFI | GGGAC | 2 cut(s) | 522, 606 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 266, 398, 630, 717, 718 |
| BsmAI | GTCTC | 1 cut(s) | 331 |
| BsmBI | CGTCTC | 1 cut(s) | 331 |
| BsmFI | GGGAC | 2 cut(s) | 522, 606 |
| BsmI | GAATGC | 1 cut(s) | 536 |
| BsnI | GGCC | 4 cut(s) | 302, 391, 489, 634 |
| BsoBI | CYCGRG | 1 cut(s) | 74 |
| Bsp120I | GGGCCC | 1 cut(s) | 487 |
| Bsp1286I | GDGCHC | 1 cut(s) | 491 |
| Bsp143I | GATC | 2 cut(s) | 40, 441 |
| BspANI | GGCC | 4 cut(s) | 302, 391, 489, 634 |
| BspHI | TCATGA | 2 cut(s) | 43, 444 |
| BspLI | GGNNCC | 3 cut(s) | 488, 489, 510 |
| BsrI | ACTGG | 1 cut(s) | 287 |
| BssMI | GATC | 2 cut(s) | 40, 441 |
| BssNI | GRCGYC | 1 cut(s) | 340 |
| Bst2UI | CCWGG | 2 cut(s) | 261, 420 |
| Bst4CI | ACNGT | 1 cut(s) | 84 |
| Bst6I | CTCTTC | 2 cut(s) | 90, 461 |
| BstACI | GRCGYC | 1 cut(s) | 340 |
| BstBAI | YACGTR | 3 cut(s) | 323, 379, 618 |
| BstC8I | GCNNGC | 1 cut(s) | 632 |
| BstDEI | CTNAG | 3 cut(s) | 125, 219, 595 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 628 |
| BstF5I | GGATG | 2 cut(s) | 276, 504 |
| BstH2I | RGCGCY | 1 cut(s) | 354 |
| BstHHI | GCGC | 1 cut(s) | 353 |
| BstKTI | GATC | 2 cut(s) | 43, 444 |
| BstMAI | GTCTC | 1 cut(s) | 331 |
| BstMBI | GATC | 2 cut(s) | 40, 441 |
| BstNI | CCWGG | 2 cut(s) | 261, 420 |
| BstNSI | RCATGY | 1 cut(s) | 117 |
| BstSCI | CCNGG | 2 cut(s) | 259, 418 |
| BstSLI | GKGCMC | 1 cut(s) | 491 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BsuI | GTATCC | 1 cut(s) | 395 |
| BsuRI | GGCC | 4 cut(s) | 302, 391, 489, 634 |
| BtsCI | GGATG | 2 cut(s) | 276, 504 |
| BtsI | GCAGTG | 2 cut(s) | 259, 488 |
| BtsIMutI | CAGTG | 2 cut(s) | 259, 488 |
| Cac8I | GCNNGC | 1 cut(s) | 632 |
| CciI | TCATGA | 2 cut(s) | 43, 444 |
| CfoI | GCGC | 1 cut(s) | 353 |
| Cfr13I | GGNCC | 5 cut(s) | 257, 300, 487, 488, 509 |
| CseI | GACGC | 1 cut(s) | 228 |
| CsiI | ACCWGGT | 1 cut(s) | 418 |
| Csp6I | GTAC | 6 cut(s) | 71, 188, 308, 320, 370, 380 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 536, 571 |
| CviAII | CATG | 6 cut(s) | 44, 64, 114, 347, 445, 477 |
| CviJI | RGCY | 7 cut(s) | 198, 218, 302, 391, 489, 571, 634 |
| CviKI_1 | RGCY | 7 cut(s) | 198, 218, 302, 391, 489, 571, 634 |
| CviQI | GTAC | 6 cut(s) | 71, 188, 308, 320, 370, 380 |
| DdeI | CTNAG | 3 cut(s) | 125, 219, 595 |
| DpnI | GATC | 2 cut(s) | 42, 443 |
| DpnII | GATC | 2 cut(s) | 40, 441 |
| DraI | TTTAAA | 1 cut(s) | 468 |
| DraIII | CACNNNGTG | 1 cut(s) | 618 |
| EaeI | YGGCCR | 1 cut(s) | 389 |
| Eam1104I | CTCTTC | 2 cut(s) | 90, 461 |
| EarI | CTCTTC | 2 cut(s) | 90, 461 |
| Eco24I | GRGCYC | 1 cut(s) | 491 |
| Eco47I | GGWCC | 2 cut(s) | 257, 509 |
| Eco72I | CACGTG | 1 cut(s) | 618 |
| Eco88I | CYCGRG | 1 cut(s) | 74 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 628 |
| EcoO109I | RGGNCCY | 2 cut(s) | 487, 488 |
| EcoRII | CCWGG | 2 cut(s) | 259, 418 |
| EcoT38I | GRGCYC | 1 cut(s) | 491 |
| Esp3I | CGTCTC | 1 cut(s) | 331 |
| FaeI | CATG | 6 cut(s) | 47, 67, 117, 350, 448, 480 |
| FaqI | GGGAC | 2 cut(s) | 522, 606 |
| FatI | CATG | 6 cut(s) | 43, 63, 113, 346, 444, 476 |
| FauNDI | CATATG | 1 cut(s) | 332 |
| FbaI | TGATCA | 1 cut(s) | 40 |
| FokI | GGATG | 2 cut(s) | 283, 511 |
| FriOI | GRGCYC | 1 cut(s) | 491 |
| FspBI | CTAG | 1 cut(s) | 225 |
| GlaI | GCGC | 1 cut(s) | 352 |
| GsaI | CCCAGC | 1 cut(s) | 721 |
| HaeII | RGCGCY | 1 cut(s) | 354 |
| HaeIII | GGCC | 4 cut(s) | 302, 391, 489, 634 |
| HgaI | GACGC | 1 cut(s) | 228 |
| HhaI | GCGC | 1 cut(s) | 353 |
| Hin1I | GRCGYC | 1 cut(s) | 340 |
| Hin1II | CATG | 6 cut(s) | 47, 67, 117, 350, 448, 480 |
| Hin6I | GCGC | 1 cut(s) | 351 |
| HinP1I | GCGC | 1 cut(s) | 351 |
| HincII | GTYRAC | 1 cut(s) | 103 |
| HindII | GTYRAC | 1 cut(s) | 103 |
| HinfI | GANTC | 2 cut(s) | 104, 580 |
| HphI | GGTGA | 1 cut(s) | 736 |
| Hpy166II | GTNNAC | 4 cut(s) | 87, 103, 131, 257 |
| Hpy188I | TCNGA | 2 cut(s) | 441, 532 |
| Hpy188III | TCNNGA | 4 cut(s) | 44, 208, 445, 640 |
| Hpy8I | GTNNAC | 4 cut(s) | 87, 103, 131, 257 |
| Hpy99I | CGWCG | 2 cut(s) | 250, 370 |
| HpyCH4III | ACNGT | 1 cut(s) | 84 |
| HpyCH4IV | ACGT | 6 cut(s) | 306, 322, 340, 368, 378, 617 |
| HpyCH4V | TGCA | 3 cut(s) | 113, 346, 476 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 219, 595 |
| HpySE526I | ACGT | 6 cut(s) | 306, 322, 340, 368, 378, 617 |
| Hsp92I | GRCGYC | 1 cut(s) | 340 |
| Hsp92II | CATG | 6 cut(s) | 47, 67, 117, 350, 448, 480 |
| HspAI | GCGC | 1 cut(s) | 351 |
| Ksp22I | TGATCA | 1 cut(s) | 40 |
| Kzo9I | GATC | 2 cut(s) | 40, 441 |
| LmnI | GCTCC | 2 cut(s) | 549, 687 |
| LweI | GCATC | 1 cut(s) | 9 |
| MabI | ACCWGGT | 1 cut(s) | 418 |
| MaeI | CTAG | 1 cut(s) | 225 |
| MaeII | ACGT | 6 cut(s) | 306, 322, 340, 368, 378, 617 |
| MalI | GATC | 2 cut(s) | 42, 443 |
| MboI | GATC | 2 cut(s) | 40, 441 |
| MboII | GAAGA | 4 cut(s) | 107, 234, 448, 658 |
| MhlI | GDGCHC | 1 cut(s) | 491 |
| MlsI | TGGCCA | 1 cut(s) | 391 |
| MluCI | AATT | 2 cut(s) | 549, 649 |
| MluNI | TGGCCA | 1 cut(s) | 391 |
| MlyI | GAGTC | 1 cut(s) | 98 |
| MmeI | TCCRAC | 1 cut(s) | 386 |
| Mox20I | TGGCCA | 1 cut(s) | 391 |
| MscI | TGGCCA | 1 cut(s) | 391 |
| MseI | TTAA | 2 cut(s) | 467, 687 |
| MslI | CAYNNNNRTG | 1 cut(s) | 481 |
| Msp20I | TGGCCA | 1 cut(s) | 391 |
| MspR9I | CCNGG | 2 cut(s) | 261, 420 |
| Mva1269I | GAATGC | 1 cut(s) | 536 |
| MvaI | CCWGG | 2 cut(s) | 261, 420 |
| NdeI | CATATG | 1 cut(s) | 332 |
| NdeII | GATC | 2 cut(s) | 40, 441 |
| NlaIII | CATG | 6 cut(s) | 47, 67, 117, 350, 448, 480 |
| NlaIV | GGNNCC | 3 cut(s) | 488, 489, 510 |
| NspI | RCATGY | 1 cut(s) | 117 |
| PaeR7I | CTCGAG | 1 cut(s) | 74 |
| PagI | TCATGA | 2 cut(s) | 43, 444 |
| PctI | GAATGC | 1 cut(s) | 536 |
| PfeI | GAWTC | 1 cut(s) | 580 |
| PleI | GAGTC | 1 cut(s) | 98 |
| PmaCI | CACGTG | 1 cut(s) | 618 |
| PmlI | CACGTG | 1 cut(s) | 618 |
| PpsI | GAGTC | 1 cut(s) | 98 |
| Ppu21I | YACGTR | 3 cut(s) | 323, 379, 618 |
| Psp6I | CCWGG | 2 cut(s) | 259, 418 |
| PspCI | CACGTG | 1 cut(s) | 618 |
| PspFI | CCCAGC | 1 cut(s) | 717 |
| PspGI | CCWGG | 2 cut(s) | 259, 418 |
| PspN4I | GGNNCC | 3 cut(s) | 488, 489, 510 |
| PspOMI | GGGCCC | 1 cut(s) | 487 |
| PspPI | GGNCC | 5 cut(s) | 257, 300, 487, 488, 509 |
| PspXI | VCTCGAGB | 1 cut(s) | 74 |
| RsaI | GTAC | 6 cut(s) | 72, 189, 309, 321, 371, 381 |
| RsaNI | GTAC | 6 cut(s) | 71, 188, 308, 320, 370, 380 |
| RseI | CAYNNNNRTG | 1 cut(s) | 481 |
| SaqAI | TTAA | 2 cut(s) | 467, 687 |
| Sau3AI | GATC | 2 cut(s) | 40, 441 |
| Sau96I | GGNCC | 5 cut(s) | 257, 300, 487, 488, 509 |
| SchI | GAGTC | 1 cut(s) | 98 |
| ScrFI | CCNGG | 2 cut(s) | 261, 420 |
| SduI | GDGCHC | 1 cut(s) | 491 |
| SexAI | ACCWGGT | 1 cut(s) | 418 |
| SfaNI | GCATC | 1 cut(s) | 9 |
| Sfr274I | CTCGAG | 1 cut(s) | 74 |
| SinI | GGWCC | 2 cut(s) | 257, 509 |
| SlaI | CTCGAG | 1 cut(s) | 74 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 481 |
| SmlI | CTYRAG | 2 cut(s) | 74, 208 |
| SmoI | CTYRAG | 2 cut(s) | 74, 208 |
| Sse9I | AATT | 2 cut(s) | 549, 649 |
| SspMI | CTAG | 1 cut(s) | 225 |
| StyD4I | CCNGG | 2 cut(s) | 259, 418 |
| TaaI | ACNGT | 1 cut(s) | 84 |
| TaiI | ACGT | 6 cut(s) | 309, 325, 343, 371, 381, 620 |
| TaqI | TCGA | 3 cut(s) | 75, 235, 248 |
| TasI | AATT | 2 cut(s) | 549, 649 |
| TfiI | GAWTC | 1 cut(s) | 580 |
| Tru1I | TTAA | 2 cut(s) | 467, 687 |
| Tru9I | TTAA | 2 cut(s) | 467, 687 |
| TscAI | CASTG | 2 cut(s) | 259, 488 |
| TspDTI | ATGAA | 3 cut(s) | 319, 448, 461 |
| TspRI | CASTG | 2 cut(s) | 259, 488 |
| VpaK11BI | GGWCC | 2 cut(s) | 257, 509 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 628 |
| XapI | RAATTY | 2 cut(s) | 549, 649 |
| XceI | RCATGY | 1 cut(s) | 117 |
| XhoI | CTCGAG | 1 cut(s) | 74 |
| XspI | CTAG | 1 cut(s) | 225 |
| ZraI | GACGTC | 1 cut(s) | 341 |