Rroxscaffold_5G00379550

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000064
Physical Location & Seq
Reverse (-)
59875024 .. 59875998
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379550.1

Sequence Viewer

Length: 975 bp
ATGGCATATTCCCTTGCAAAAGAATATAATCTTACAACGCAGCGCTGCCACAGGGTACTTCCTATGCTCCTGATATCTGCCGGATCCTCAAAAACGCTGTACAGTGTTTCCGAAGGAAAAAACTATATTAAAAATGTTCTGCTTCCGTACAAAAGTAAGAGGTTTTGTGGCTCTAGCCATGGTTGGTTGGCCATTGTAGACAAAATTAGTCGTGACATAACTCTCATTAACCCTTTTGCACAAGCAATGGCGCCCATTCATCTCCCTCATTTGGAGGAGGACGTCTCAAAGGTCATACTATCTGCTGATCCTGCTTTGAATCCGAATAGTTATATGGTTATAGCAATCCACGATTCGATACACTTGGCTTTCCTTAAAGGAGGGCAGGAAGATTGGAATTGCATCAGACTAGACTCACTACATCACCCTCTTACTGATGTTATATTTTATAAAAGCCAAATCTACGCGGTATCAATTCATGGAACGATTGTGTCAATCAATGTTAACGAGTGTGTTATCAACTCTTCACATCCTCCAGAATTACTGGATGTTCGGGCATTCATGACTCGCATTAGAGATTTGGATCAGGCCTATCTTGTGGAATCAACCAAGGGACACCTATGGCACGTACAAAGATGTTTTATAGGAGTCGCACAATTTGACGGCAATGTACTTTTCGAAGAGGGATTCAGGGTATACAAGGTGGTGTTCAGCGATACAGATGGTTGCATGGTGAAGCATGTTGAGGTAAAAACCATAGGAGATGAGGCTTTGTTCCTTGGCAAAAATTATTCAGTCTCTGTTTCGGCTTCAAAGTTTCCAGGGTGCCGGCCAAATTCCATATACCACACTGGAGATTCGAAAGAATTTGTCATGAGAATTTTCGATGTAGAGTTCGGAACCGCTTGTGCAGTTATGGAAGGTCAAAAGCCACGCGGACTTTGGATTACGCCACCGTTTAAGGGCCTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

324

Amino Acids

36.31

Weight (kDa)

7.22

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 33 - 295 1.6e-46 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000064)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04090 FvH4_1g04091 FvH4_1g04110 FvH4_1g04440 FvH4_1g05330 FvH4_1g05332 FvH4_1g05560 FvH4_1g05580 FvH4_1g05590 FvH4_1g05611 FvH4_1g05892 FvH4_1g05900 FvH4_1g06763 FvH4_1g17860 FvH4_1g17860 FvH4_1g17861 FvH4_1g17880 FvH4_1g17902 FvH4_2g08142 FvH4_2g25110 FvH4_2g34380 FvH4_3g19131 FvH4_3g20501 FvH4_4g02770 FvH4_4g02771 FvH4_4g17610 FvH4_4g26951 FvH4_4g28330 FvH4_4g29110 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29670 FvH4_4g29690 FvH4_4g29691 FvH4_4g30221 FvH4_4g30230 FvH4_4g30240 FvH4_4g30602 FvH4_4g30610 FvH4_6g01351 FvH4_6g01780 FvH4_6g01890 FvH4_6g47150 FvH4_6g52260 FvH4_6g52703 FvH4_7g23210 FvH4_7g23240 FvH4_7g23350 FvH4_7g28790 FvH4_7g28820 FvH4_7g28830 FvH4_7g28840 FvH4_7g28890 FvH4_7g29040 FvH4_7g29050 FvH4_7g29990 FvH4_7g33871 FvH4_c6g00090
malus_domestica MD01G1180800.v1.1 MD01G1199400.v1.1 MD02G1310000.v1.1 MD04G1097400.v1.1 MD07G1264800.v1.1 MD07G1264900.v1.1 MD07G1270200.v1.1 MD07G1270300.v1.1 MD07G1270500.v1.1 MD10G1043600.v1.1 MD13G1047500.v1.1 MD13G1075200.v1.1
prunus_persica Prupe.1G009400_v2.0.a1 Prupe.1G076100_v2.0.a1 Prupe.1G158300_v2.0.a1 Prupe.1G208900_v2.0.a1 Prupe.1G273900_v2.0.a1 Prupe.2G253900_v2.0.a1 Prupe.2G255700_v2.0.a1 Prupe.2G256000_v2.0.a1 Prupe.2G280300_v2.0.a1 Prupe.2G290700_v2.0.a1 Prupe.3G068500_v2.0.a1 Prupe.4G112800_v2.0.a1 Prupe.5G168600_v2.0.a1 Prupe.5G168800_v2.0.a1 Prupe.5G169100_v2.0.a1 Prupe.8G049800_v2.0.a1
pyrus_communis pycom01g19330 pycom01g20930 pycom01g22010 pycom01g22020 pycom02g26090 pycom07g24330 pycom07g24720 pycom13g04150 pycom420g01320
rosa_chinensis RchiOBHm_Chr1g0324121 RchiOBHm_Chr1g0324251 RchiOBHm_Chr1g0343741 RchiOBHm_Chr1g0355031 RchiOBHm_Chr1g0359461 RchiOBHm_Chr1g0376351 RchiOBHm_Chr1g0376381 RchiOBHm_Chr2g0092531 RchiOBHm_Chr2g0108311 RchiOBHm_Chr2g0108321 RchiOBHm_Chr2g0108331 RchiOBHm_Chr2g0133991 RchiOBHm_Chr2g0156691 RchiOBHm_Chr2g0173801 RchiOBHm_Chr3g0449701 RchiOBHm_Chr3g0449861 RchiOBHm_Chr4g0417201 RchiOBHm_Chr4g0417931 RchiOBHm_Chr4g0424551 RchiOBHm_Chr4g0442921 RchiOBHm_Chr4g0442931 RchiOBHm_Chr5g0032171 RchiOBHm_Chr5g0032191 RchiOBHm_Chr5g0032221 RchiOBHm_Chr6g0258051 RchiOBHm_Chr6g0277851 RchiOBHm_Chr6g0291671 RchiOBHm_Chr6g0291691 RchiOBHm_Chr6g0312761 RchiOBHm_Chr7g0223801 RchiOBHm_Chr7g0224141
rosa_laevigata RLG00000001917 RLG00000001951 RLG00000005804 RLG00000006309 RLG00000006344 RLG00000006458 RLG00000016168 RLG00000016259 RLG00000016305 RLG00000016306 RLG00000019810 RLG00000022223 RLG00000026077 RLG00000026607 RLG00000029703 RLG00000033364 RLG00000034633 RLG00000034637
rosa_multiflora Rmu_co8010764.1_g000001 Rmu_co8262143.1_g000001 Rmu_co8346175.1_g000001 Rmu_sc0000096.1_g000016 Rmu_sc0000544.1_g000003 Rmu_sc0000591.1_g000007 Rmu_sc0000756.1_g000029 Rmu_sc0000841.1_g000017 Rmu_sc0000907.1_g000020 Rmu_sc0000954.1_g000004 Rmu_sc0001195.1_g000007 Rmu_sc0001198.1_g000008 Rmu_sc0001201.1_g000011 Rmu_sc0001201.1_g000013 Rmu_sc0001782.1_g000035 Rmu_sc0001904.1_g000004 Rmu_sc0001962.1_g000039 Rmu_sc0002113.1_g000021 Rmu_sc0002226.1_g000017 Rmu_sc0002226.1_g000020 Rmu_sc0002327.1_g000005 Rmu_sc0002372.1_g000010 Rmu_sc0002372.1_g000014 Rmu_sc0002687.1_g000005 Rmu_sc0003031.1_g000019 Rmu_sc0003076.1_g000014 Rmu_sc0004296.1_g000009 Rmu_sc0004540.1_g000009 Rmu_sc0005369.1_g000002 Rmu_sc0005375.1_g000003 Rmu_sc0005375.1_g000013 Rmu_sc0005742.1_g000008 Rmu_sc0005742.1_g000015 Rmu_sc0005742.1_g000021 Rmu_sc0007419.1_g000011 Rmu_sc0008909.1_g000008 Rmu_sc0010556.1_g000018 Rmu_sc0010999.1_g000008 Rmu_sc0017510.1_g000003 Rmu_sc0017556.1_g000001 Rmu_sc0017900.1_g000007 Rmu_sc0024249.1_g000001 Rmu_sc0032377.1_g000001 Rmu_sc0033569.1_g000001 Rmu_sc0036457.1_g000001 Rmu_sc0041304.1_g000001 Rmu_ssc0000204.1_g000011 Rmu_ssc0000438.1_g000056
rosa_roxburghii Rroxscaffold_1G00048250 Rroxscaffold_1G00048290 Rroxscaffold_2G00092800 Rroxscaffold_2G00110580 Rroxscaffold_2G00135240 Rroxscaffold_2G00135260 Rroxscaffold_2G00135300 Rroxscaffold_2G00149010 Rroxscaffold_2G00149160 Rroxscaffold_2G00149170 Rroxscaffold_2G00149630 Rroxscaffold_2G00151760 Rroxscaffold_2G00151790 Rroxscaffold_2G00152170 Rroxscaffold_3G00225510 Rroxscaffold_3G00249210 Rroxscaffold_4G00277020 Rroxscaffold_4G00281760 Rroxscaffold_4G00281770 Rroxscaffold_4G00281810 Rroxscaffold_4G00281820 Rroxscaffold_4G00282160 Rroxscaffold_4G00310340 Rroxscaffold_5G00361040 Rroxscaffold_5G00363770 Rroxscaffold_5G00366460 Rroxscaffold_5G00378270 Rroxscaffold_5G00378310 Rroxscaffold_5G00379550 Rroxscaffold_5G00379650 Rroxscaffold_6G00422110 Rroxscaffold_6G00427680 Rroxscaffold_7G00175850 Rroxscaffold_7G00175860 Rroxscaffold_7G00190720 Rroxscaffold_7G00190750 Rroxscaffold_7G00190830 Rroxscaffold_7G00196820
rosa_rugosa Rorug01G0395900 Rorug01G0444400 Rorug01G0488100 Rorug02G0001700 Rorug02G0021600 Rorug02G0025700 Rorug02G0152200 Rorug02G0271300 Rorug02G0455800 Rorug02G0572800 Rorug02G0576000 Rorug04G0146300 Rorug04G0172200 Rorug04G0172400 Rorug04G0311300 Rorug04G0312200 Rorug04G0312300 Rorug05G0129500 Rorug05G0129700 Rorug05G0250600 Rorug06G0112600 Rorug06G0220700 Rorug06G0220800 Rorug07G0114600
rosa_samantha Rh1DG066700 Rh1DG081800 Rh1DG184300 Rh1DG401900 Rh1DG402700 Rh1DG407000 Rh1DG407600 Rh2AG200800 Rh2AG201000 Rh2AG521000 Rh2BG066200 Rh2BG066300 Rh2BG073900 Rh2BG373500 Rh2BG417600 Rh2BG662600 Rh2DG066200 Rh2DG072000 Rh2DG390000 Rh2DG677700 Rh3CG020200 Rh3CG021500 Rh3CG081200 Rh4AG209600 Rh4AG362600 Rh4AG362700 Rh4AG397200 Rh4BG209800 Rh4BG209900 Rh4BG210000 Rh4CG220800 Rh4CG271300 Rh4CG388000 Rh4DG029800 Rh4DG368700 Rh4DG403900 Rh5AG035900 Rh5BG034600 Rh5BG034900 Rh5DG228700 Rh5DG228800 Rh6AG355900 Rh6CG083600 Rh6CG229000 Rh6CG229100 Rh6CG229700 Rh6CG346500 Rh6CG346600 Rh7AG362300 Rh7AG362400 Rh7AG363200 Rh7AG365100 Rh7CG380900 Rh7CG381000 Rh7CG381600 Rh7DG437600
rosa_wichuraiana Rw0G004580 Rw0G004590 Rw0G005750 Rw0G006640 Rw0G007050 Rw0G008040 Rw0G012200 Rw0G013750 Rw0G016590 Rw1G006090 Rw1G012040 Rw1G036130 Rw1G036270 Rw1G036290 Rw1G036420 Rw1G036430 Rw1G036590 Rw2G003560 Rw2G005130 Rw2G005980 Rw2G006090 Rw2G015980 Rw2G016000 Rw2G043010 Rw2G053520 Rw4G018760 Rw4G022000 Rw4G034250 Rw5G003280 Rw5G020380 Rw5G020390 Rw6G008210 Rw6G031000 Rw7G030830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AatII GACGTC 1 cut(s) 285
AccB1I GGYRCC 2 cut(s) 250, 825
AccI GTMKAC 2 cut(s) 198, 696
AccII CGCG 2 cut(s) 467, 936
AciI CCGC 3 cut(s) 467, 903, 936
AclWI GGATC 4 cut(s) 78, 91, 302, 591
AcoI YGGCCR 2 cut(s) 189, 830
AcsI RAATTY 3 cut(s) 835, 866, 879
AcyI GRCGYC 2 cut(s) 251, 282
AfaI GTAC 5 cut(s) 57, 101, 149, 630, 672
AfeI AGCGCT 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 271, 962
AgsI TTSAA 2 cut(s) 319, 813
AjnI CCWGG 1 cut(s) 820
Alw26I GTCTC 2 cut(s) 289, 802
AlwI GGATC 4 cut(s) 78, 91, 302, 591
AlwNI CAGNNNCTG 1 cut(s) 800
Aor51HI AGCGCT 1 cut(s) 44
AoxI GGCC 4 cut(s) 189, 588, 830, 964
ApeKI GCWGC 2 cut(s) 40, 45
ApoI RAATTY 3 cut(s) 835, 866, 879
AspLEI GCGC 2 cut(s) 45, 253
AspS9I GGNCC 1 cut(s) 964
AsuHPI GGTGA 2 cut(s) 416, 745
AsuII TTCGAA 2 cut(s) 678, 860
BalI TGGCCA 1 cut(s) 191
BamHI GGATCC 1 cut(s) 83
BanI GGYRCC 2 cut(s) 250, 825
BbvI GCAGC 2 cut(s) 32, 52
BccI CCATC 1 cut(s) 716
BceAI ACGGC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 822
BcoDI GTCTC 2 cut(s) 289, 802
BfaI CTAG 3 cut(s) 174, 410, 973
BfoI RGCGCY 2 cut(s) 46, 254
BisI GCNGC 2 cut(s) 41, 46
BlsI GCNGC 2 cut(s) 42, 47
Bme1390I CCNGG 1 cut(s) 822
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 4 cut(s) 85, 252, 827, 901
BmrFI CCNGG 1 cut(s) 822
BmsI GCATC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 269, 301
BpmI CTGGAG 2 cut(s) 519, 873
Bpu14I TTCGAA 2 cut(s) 678, 860
BsaAI YACGTR 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 2 cut(s) 251, 282
BsaJI CCNNGG 4 cut(s) 178, 609, 778, 821
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 962
Bse118I RCCGGY 1 cut(s) 828
Bse1I ACTGG 2 cut(s) 549, 856
Bse3DI GCAATG 2 cut(s) 252, 673
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 1 cut(s) 822
BseDI CCNNGG 4 cut(s) 178, 609, 778, 821
BseGI GGATG 2 cut(s) 529, 553
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 2 cut(s) 271, 962
BseMI GCAATG 2 cut(s) 252, 673
BseNI ACTGG 2 cut(s) 549, 856
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 32, 52
BsgI GTGCAG 1 cut(s) 930
Bsh1236I CGCG 2 cut(s) 467, 936
BshFI GGCC 4 cut(s) 191, 590, 832, 966
BshNI GGYRCC 2 cut(s) 250, 825
BsiSI CCGG 2 cut(s) 81, 829
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 2 cut(s) 271, 962
BsmAI GTCTC 2 cut(s) 289, 802
BsmBI CGTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 4 cut(s) 191, 590, 832, 966
Bsp119I TTCGAA 2 cut(s) 678, 860
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 3 cut(s) 83, 307, 583
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 3 cut(s) 467, 903, 936
BspANI GGCC 4 cut(s) 191, 590, 832, 966
BspFNI CGCG 2 cut(s) 467, 936
BspHI TCATGA 2 cut(s) 561, 873
BspLI GGNNCC 4 cut(s) 85, 252, 827, 901
BspPI GGATC 4 cut(s) 78, 91, 302, 591
BspT104I TTCGAA 2 cut(s) 678, 860
BspT107I GGYRCC 2 cut(s) 250, 825
BsrDI GCAATG 2 cut(s) 252, 673
BsrFI RCCGGY 1 cut(s) 828
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 549, 856
BssAI RCCGGY 1 cut(s) 828
BssECI CCNNGG 4 cut(s) 178, 609, 778, 821
BssMI GATC 3 cut(s) 83, 307, 583
BssNAI GTATAC 1 cut(s) 697
BssNI GRCGYC 2 cut(s) 251, 282
BssT1I CCWWGG 3 cut(s) 178, 609, 778
Bst1107I GTATAC 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 2 cut(s) 104, 957
Bst6I CTCTTC 2 cut(s) 529, 675
BstACI GRCGYC 2 cut(s) 251, 282
BstAUI TGTACA 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 628
BstBI TTCGAA 2 cut(s) 678, 860
BstC8I GCNNGC 1 cut(s) 830
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 529, 553
BstFNI CGCG 2 cut(s) 467, 936
BstH2I RGCGCY 2 cut(s) 46, 254
BstHHI GCGC 2 cut(s) 45, 253
BstKTI GATC 3 cut(s) 86, 310, 586
BstMAI GTCTC 2 cut(s) 289, 802
BstMBI GATC 3 cut(s) 83, 307, 583
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 822
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 1 cut(s) 820
BstUI CGCG 2 cut(s) 467, 936
BstV1I GCAGC 2 cut(s) 32, 52
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 697
BsuRI GGCC 4 cut(s) 191, 590, 832, 966
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 2 cut(s) 529, 553
BtsIMutI CAGTG 2 cut(s) 109, 849
Cac8I GCNNGC 1 cut(s) 830
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 2 cut(s) 561, 873
CfoI GCGC 2 cut(s) 45, 253
Cfr10I RCCGGY 1 cut(s) 828
Cfr13I GGNCC 1 cut(s) 964
Csp6I GTAC 5 cut(s) 56, 100, 148, 629, 671
CviAII CATG 6 cut(s) 179, 479, 562, 730, 740, 874
CviQI GTAC 5 cut(s) 56, 100, 148, 629, 671
DinI GGCGCC 1 cut(s) 252
DpnI GATC 3 cut(s) 85, 309, 585
DpnII GATC 3 cut(s) 83, 307, 583
EaeI YGGCCR 2 cut(s) 189, 830
Eam1104I CTCTTC 2 cut(s) 529, 675
EarI CTCTTC 2 cut(s) 529, 675
Eco130I CCWWGG 3 cut(s) 178, 609, 778
Eco147I AGGCCT 1 cut(s) 590
Eco32I GATATC 1 cut(s) 75
Eco47III AGCGCT 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 820
EcoRV GATATC 1 cut(s) 75
EcoT14I CCWWGG 3 cut(s) 178, 609, 778
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
ErhI CCWWGG 3 cut(s) 178, 609, 778
Esp3I CGTCTC 1 cut(s) 289
FaeI CATG 6 cut(s) 182, 482, 565, 733, 743, 877
FaqI GGGAC 1 cut(s) 627
FatI CATG 6 cut(s) 178, 478, 561, 729, 739, 873
FblI GTMKAC 2 cut(s) 198, 696
Fnu4HI GCNGC 2 cut(s) 41, 46
FokI GGATG 2 cut(s) 516, 560
Fsp4HI GCNGC 2 cut(s) 41, 46
FspBI CTAG 3 cut(s) 174, 410, 973
GlaI GCGC 2 cut(s) 44, 252
GluI GCNGC 2 cut(s) 41, 46
GsuI CTGGAG 2 cut(s) 519, 873
HaeII RGCGCY 2 cut(s) 46, 254
HaeIII GGCC 4 cut(s) 191, 590, 832, 966
HapII CCGG 2 cut(s) 81, 829
HhaI GCGC 2 cut(s) 45, 253
Hin1I GRCGYC 2 cut(s) 251, 282
Hin1II CATG 6 cut(s) 182, 482, 565, 733, 743, 877
Hin6I GCGC 2 cut(s) 43, 251
HinP1I GCGC 2 cut(s) 43, 251
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 8 cut(s) 319, 353, 413, 565, 602, 648, 687, 857
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 2 cut(s) 81, 829
HphI GGTGA 2 cut(s) 416, 745
Hpy166II GTNNAC 3 cut(s) 199, 505, 697
Hpy188I TCNGA 4 cut(s) 112, 324, 407, 899
Hpy188III TCNNGA 5 cut(s) 70, 212, 536, 562, 874
Hpy8I GTNNAC 3 cut(s) 199, 505, 697
HpyAV CCTTC 2 cut(s) 107, 914
HpyCH4III ACNGT 2 cut(s) 104, 957
HpyCH4IV ACGT 2 cut(s) 282, 627
HpyCH4V TGCA 5 cut(s) 17, 239, 402, 729, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpySE526I ACGT 2 cut(s) 282, 627
Hsp92I GRCGYC 2 cut(s) 251, 282
Hsp92II CATG 6 cut(s) 182, 482, 565, 733, 743, 877
HspAI GCGC 2 cut(s) 43, 251
KasI GGCGCC 1 cut(s) 250
KroI GCCGGC 1 cut(s) 828
KroNI GCCGGC 1 cut(s) 830
KspAI GTTAAC 1 cut(s) 505
Kzo9I GATC 3 cut(s) 83, 307, 583
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 2 cut(s) 32, 52
LweI GCATC 1 cut(s) 411
MaeI CTAG 3 cut(s) 174, 410, 973
MaeII ACGT 2 cut(s) 282, 627
MaeIII GTNAC 1 cut(s) 212
MalI GATC 3 cut(s) 85, 309, 585
MboI GATC 3 cut(s) 83, 307, 583
MboII GAAGA 3 cut(s) 401, 516, 692
MflI RGATCY 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 9 cut(s) 204, 397, 474, 539, 656, 787, 835, 866, 879
MluNI TGGCCA 1 cut(s) 191
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 3 cut(s) 407, 559, 657
Mox20I TGGCCA 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 828
MscI TGGCCA 1 cut(s) 191
MseI TTAA 5 cut(s) 129, 228, 375, 504, 960
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 81, 829
MspR9I CCNGG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 1 cut(s) 822
MvnI CGCG 2 cut(s) 467, 936
MwoI GCNNNNNNNGC 1 cut(s) 311
NaeI GCCGGC 1 cut(s) 830
NarI GGCGCC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 178
NdeII GATC 3 cut(s) 83, 307, 583
NgoMIV GCCGGC 1 cut(s) 828
NlaIII CATG 6 cut(s) 182, 482, 565, 733, 743, 877
NlaIV GGNNCC 4 cut(s) 85, 252, 827, 901
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 743
NspV TTCGAA 2 cut(s) 678, 860
PagI TCATGA 2 cut(s) 561, 873
PceI AGGCCT 1 cut(s) 590
PctI GAATGC 1 cut(s) 557
PdiI GCCGGC 1 cut(s) 830
PfeI GAWTC 5 cut(s) 319, 353, 602, 687, 857
PkrI GCNGC 2 cut(s) 42, 47
PleI GAGTC 3 cut(s) 407, 559, 656
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 3 cut(s) 407, 559, 656
Ppu21I YACGTR 1 cut(s) 628
PsiI TTATAA 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 4 cut(s) 85, 252, 827, 901
PspPI GGNCC 1 cut(s) 964
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 5 cut(s) 57, 101, 149, 630, 672
RsaNI GTAC 5 cut(s) 56, 100, 148, 629, 671
SaqAI TTAA 5 cut(s) 129, 228, 375, 504, 960
SatI GCNGC 2 cut(s) 41, 46
Sau3AI GATC 3 cut(s) 83, 307, 583
Sau96I GGNCC 1 cut(s) 964
SchI GAGTC 3 cut(s) 407, 559, 657
ScrFI CCNGG 1 cut(s) 822
SetI ASST 8 cut(s) 164, 285, 294, 621, 630, 705, 750, 925
SfaNI GCATC 1 cut(s) 411
SfoI GGCGCC 1 cut(s) 252
SfuI TTCGAA 2 cut(s) 678, 860
Sse9I AATT 9 cut(s) 204, 397, 474, 539, 656, 787, 835, 866, 879
SseBI AGGCCT 1 cut(s) 590
SsiI CCGC 3 cut(s) 467, 903, 936
SspDI GGCGCC 1 cut(s) 250
SspMI CTAG 3 cut(s) 174, 410, 973
StuI AGGCCT 1 cut(s) 590
StyD4I CCNGG 1 cut(s) 820
StyI CCWWGG 3 cut(s) 178, 609, 778
TaaI ACNGT 2 cut(s) 104, 957
TaiI ACGT 2 cut(s) 285, 630
TaqI TCGA 4 cut(s) 356, 678, 860, 885
TasI AATT 9 cut(s) 204, 397, 474, 539, 656, 787, 835, 866, 879
TatI WGTACW 2 cut(s) 99, 670
TfiI GAWTC 5 cut(s) 319, 353, 602, 687, 857
Tru1I TTAA 5 cut(s) 129, 228, 375, 504, 960
Tru9I TTAA 5 cut(s) 129, 228, 375, 504, 960
TscAI CASTG 2 cut(s) 109, 856
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 40, 45
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 248, 467, 550
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 109, 856
XapI RAATTY 3 cut(s) 835, 866, 879
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XmiI GTMKAC 2 cut(s) 198, 696
XspI CTAG 3 cut(s) 174, 410, 973
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.