FvH4_1g29041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000607
Physical Location & Seq
Forward (+)
21470558 .. 21470875
318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29041.t1

Sequence Viewer

Length: 225 bp
ATGAAACCTTTCTCTTTTGCTTTCACCCGGCTATCTCTTAATACCACCGCCTCTGTAACATGTATAGAAGCTCTTCGAACATGGCTTGATGTCACAGAAATAAGTCTGATTATCGGCTTCGGAGGGGATAGGTACTCCGAGGTTAAGCATGTTGATGCTAGAGCAATCCCAGGATGGGTGACCTACTGGGAAGCTGCTCCTGAGCTGCCGGAAACAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

5.19

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 3 cut(s) 71, 194, 205
AluI AGCT 3 cut(s) 71, 194, 205
ApeKI GCWGC 2 cut(s) 194, 205
Asp700I GAANNNNTTC 2 cut(s) 8, 72
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 16, 190
AsuII TTCGAA 1 cut(s) 76
BbvI GCAGC 2 cut(s) 181, 192
BccI CCATC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 195, 206
BlsI GCNGC 2 cut(s) 196, 207
Bme1390I CCNGG 2 cut(s) 28, 171
BmrFI CCNGG 2 cut(s) 28, 171
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 138, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 138, 169
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 191
BseXI GCAGC 2 cut(s) 181, 192
BsiSI CCGG 2 cut(s) 28, 209
BslI CCNNNNNNNGG 1 cut(s) 175
Bsp119I TTCGAA 1 cut(s) 76
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 76
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 138, 169
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 201
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 179
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 63, 152
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 26, 169
BstV1I GCAGC 2 cut(s) 181, 192
BtsCI GGATG 1 cut(s) 179
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 60, 81, 149
CviJI RGCY 6 cut(s) 31, 71, 85, 117, 194, 205
CviKI_1 RGCY 6 cut(s) 31, 71, 85, 117, 194, 205
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 3 cut(s) 63, 84, 152
FaiI YATR 4 cut(s) 61, 65, 82, 150
FatI CATG 3 cut(s) 59, 80, 148
Fnu4HI GCNGC 2 cut(s) 195, 206
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 2 cut(s) 195, 206
FspBI CTAG 1 cut(s) 159
GluI GCNGC 2 cut(s) 195, 206
HapII CCGG 2 cut(s) 28, 209
Hin1II CATG 3 cut(s) 63, 84, 152
HpaII CCGG 2 cut(s) 28, 209
HphI GGTGA 2 cut(s) 16, 190
Hpy188I TCNGA 3 cut(s) 108, 122, 139
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 3 cut(s) 63, 84, 152
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 41, 156, 172, 183, 213
Lsp1109I GCAGC 2 cut(s) 181, 192
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 55, 91, 178
MboII GAAGA 1 cut(s) 65
MnlI CCTC 3 cut(s) 61, 116, 133
MroXI GAANNNNTTC 2 cut(s) 8, 72
MseI TTAA 2 cut(s) 39, 144
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 2 cut(s) 28, 209
MspR9I CCNGG 2 cut(s) 28, 171
MvaI CCWGG 1 cut(s) 171
NciI CCSGG 1 cut(s) 28
NlaIII CATG 3 cut(s) 63, 84, 152
NmuCI GTSAC 2 cut(s) 91, 178
NspI RCATGY 2 cut(s) 63, 152
NspV TTCGAA 1 cut(s) 76
PciI ACATGT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 78
PdmI GAANNNNTTC 2 cut(s) 8, 72
PkrI GCNGC 2 cut(s) 196, 207
PscI ACATGT 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 178
PspGI CCWGG 1 cut(s) 169
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 39, 144
SatI GCNGC 2 cut(s) 195, 206
ScrFI CCNGG 2 cut(s) 28, 171
SetI ASST 7 cut(s) 10, 73, 134, 144, 185, 196, 207
SfaNI GCATC 1 cut(s) 145
SfuI TTCGAA 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 153
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 26, 169
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 76
Tru1I TTAA 2 cut(s) 39, 144
Tru9I TTAA 2 cut(s) 39, 144
TseFI GTSAC 2 cut(s) 91, 178
TseI GCWGC 2 cut(s) 194, 205
Tsp45I GTSAC 2 cut(s) 91, 178
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 2 cut(s) 63, 152
XmnI GAANNNNTTC 2 cut(s) 8, 72
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.