Rmu_sc0005578.1_g000002

MULE transposase domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005578.1
Physical Location & Seq
Reverse (-)
5000 .. 6625
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005578.1_g000002.1.cds

Sequence Viewer

Length: 1626 bp
atgtctaaagtgtcaatcagaccttgccatgcgtatgagtacatggtggagcaggcggggggatataagacagtgggatttactgagaaggatctatacaacaagcttgaccaacaacggtgcaccacttcctttgagagtgactccgaaggcgcacttgcctacatgaacgctctggcagcacaagacccatacttctactgcaggttcaatgtagatatagaagacaggttagcaaacatgttttggcgagatgggcatgcatttgttgattttatgtgttaccgggatgtgctgatctttgatagcacaaacaaaaccaatgtttacaaaaagccattggttttgtttgttgggtcaaacaatcatcggggaagtattttgtttggtgctactcttcttgtcgatgaaacagtggagacatacacttggctgttgcgttcgtttttggatgcaatgaatgggaagatgccaatagctgtactcacagatggagatgaggccatgcgtagtgcaattgaagacgtgatgccacaagcaaagcaccgtctttgtgcttggcacctttccagaaatgccaacactaatttgaagtgcgacgaaaagttgaaagcttttaacaggtgcatgagaaaattccaaactgtggagcagtttgaagtaatgtggcacgacatggtggagaaattcgatctccacaacagtttctggatcaacatgatgtatgagaaacgacacaagtgggctcaagcatttttcaggaaccattttatggctggcataagaagcacgcagaggtgtgagggcatgaataggttcatcaaagactctattgcgagcggcatgaaactagtcgaagtcgttccgaggatggaccgagcactcatgagattgagaaacaatcaagtaagggatgactttaacactatgaactcaacccctgttctcgaaactcacctaaaagacttggagaatcatgcagcttctatatacacatatgatatgtttaagtgggttaggaaggagatcaggaaggagagccaagccacactacgacagggaccagagtactttgaagatgggcaccgtgtttacacaatgtcagcttacaagtggcctgattttgagcacaaggtagtttactaccatgggaaaaacactgaaagtgcaacagacccgatcatggtatgttcttgtaacatgtttcagtataggggagtcccatgtcgtcacatgttcacagtgatgaaacacgaacacatcaatgagattccaaagtcactgattgtgaagagatggtcgaagtctgctagagatgtgtgttcaatcaaatatccggaacaagatattttcaaagaagccctggaagttagtaggtatggtgctatgagtgttgattgcaaccgaatgtgtttttatgcttccaagtcggaagcagggtacaacatgttgaagagagagataaatagactgacaacaataatggaagggttgttgagaggctgtgaacaggttcaaagtatagctacaccgaagagtaaaggttgtgttttaagagatcttatcaccgctaagaccaaaggcagagaagccaaaagctacaaaaagtatgagccatccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

63.32

Weight (kDa)

8.85

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 561, 1083
AccB7I CCANNNNNTGG 2 cut(s) 646, 772
AccBSI CCGCTC 1 cut(s) 840
AccIII TCCGGA 1 cut(s) 1336
AciI CCGC 3 cut(s) 56, 840, 1569
AclWI GGATC 2 cut(s) 99, 719
AcsI RAATTY 2 cut(s) 635, 686
AfaI GTAC 4 cut(s) 41, 483, 1070, 1442
AfiI CCNNNNNNNGG 3 cut(s) 646, 772, 1183
AflIII ACRYGT 4 cut(s) 240, 1200, 1233, 1446
AhlI ACTAGT 1 cut(s) 850
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 1 cut(s) 1362
AluBI AGCT 7 cut(s) 106, 479, 614, 983, 1106, 1526, 1599
AluI AGCT 7 cut(s) 106, 479, 614, 983, 1106, 1526, 1599
Alw21I GWGCWC 3 cut(s) 125, 883, 1131
Alw26I GTCTC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 121
AlwI GGATC 2 cut(s) 99, 719
AlwNI CAGNNNCTG 1 cut(s) 708
Aor13HI TCCGGA 1 cut(s) 1336
AoxI GGCC 2 cut(s) 501, 1115
ApaLI GTGCAC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 179, 980
ApoI RAATTY 2 cut(s) 635, 686
Asp700I GAANNNNTTC 3 cut(s) 815, 861, 1512
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 874, 1061
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 947, 1558
AvaII GGWCC 2 cut(s) 874, 1061
BaeGI GKGCMC 2 cut(s) 125, 1086
BanI GGYRCC 2 cut(s) 561, 1083
BanII GRGCYC 1 cut(s) 748
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbsI GAAGAC 2 cut(s) 231, 528
Bbv12I GWGCWC 3 cut(s) 125, 883, 1131
BbvI GCAGC 2 cut(s) 191, 992
BccI CCATC 6 cut(s) 248, 485, 865, 1073, 1290, 1624
BciT130I CCWGG 1 cut(s) 1364
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 413
BcuI ACTAGT 1 cut(s) 850
BfaI CTAG 2 cut(s) 851, 1311
BfmI CTRYAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 195
BglII AGATCT 1 cut(s) 1558
BisI GCNGC 3 cut(s) 180, 841, 981
BlsI GCNGC 3 cut(s) 181, 842, 982
BmcAI AGTACT 1 cut(s) 1070
Bme1390I CCNGG 2 cut(s) 287, 1364
Bme18I GGWCC 2 cut(s) 874, 1061
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 874, 1061
BmiI GGNNCC 4 cut(s) 563, 764, 1062, 1085
BmrFI CCNGG 2 cut(s) 287, 1364
BmsI GCATC 3 cut(s) 442, 459, 519
BpiI GAAGAC 2 cut(s) 231, 528
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 1 cut(s) 732
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 3 cut(s) 866, 1147, 1362
BsaWI WCCGGW 1 cut(s) 1336
Bsc4I CCNNNNNNNGG 3 cut(s) 646, 772, 1183
Bse3DI GCAATG 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 1336
BseBI CCWGG 1 cut(s) 1364
BseDI CCNNGG 3 cut(s) 866, 1147, 1362
BseGI GGATG 5 cut(s) 295, 457, 876, 919, 1616
BseLI CCNNNNNNNGG 3 cut(s) 646, 772, 1183
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 75
BseSI GKGCMC 2 cut(s) 125, 1086
BseXI GCAGC 2 cut(s) 191, 992
BshFI GGCC 2 cut(s) 503, 1117
BshNI GGYRCC 2 cut(s) 561, 1083
BsiHKAI GWGCWC 3 cut(s) 125, 883, 1131
BsiSI CCGG 2 cut(s) 286, 1337
BslFI GGGAC 2 cut(s) 1074, 1205
BslI CCNNNNNNNGG 3 cut(s) 646, 772, 1183
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 1074, 1205
BsnI GGCC 2 cut(s) 503, 1117
Bsp1286I GDGCHC 5 cut(s) 125, 748, 883, 1086, 1131
Bsp13I TCCGGA 1 cut(s) 1336
Bsp143I GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
Bsp19I CCATGG 1 cut(s) 1147
BspACI CCGC 3 cut(s) 56, 840, 1569
BspANI GGCC 2 cut(s) 503, 1117
BspCNI CTCAG 1 cut(s) 76
BspEI TCCGGA 1 cut(s) 1336
BspHI TCATGA 1 cut(s) 885
BspLI GGNNCC 4 cut(s) 563, 764, 1062, 1085
BspMAI CTGCAG 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 195
BspPI GGATC 2 cut(s) 99, 719
BspT107I GGYRCC 2 cut(s) 561, 1083
BsrBI CCGCTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 462
BssECI CCNNGG 3 cut(s) 866, 1147, 1362
BssMI GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
BssT1I CCWWGG 1 cut(s) 1147
Bst2UI CCWGG 1 cut(s) 1364
Bst4CI ACNGT 8 cut(s) 73, 120, 415, 548, 646, 704, 1088, 1243
Bst6I CTCTTC 4 cut(s) 402, 1286, 1448, 1529
BstC8I GCNNGC 5 cut(s) 54, 261, 778, 791, 838
BstDEI CTNAG 2 cut(s) 84, 1572
BstDSI CCRYGG 1 cut(s) 1147
BstF5I GGATG 5 cut(s) 295, 457, 876, 919, 1616
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 7 cut(s) 94, 300, 694, 714, 1029, 1182, 1561
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
BstMWI GCNNNNNNNGC 3 cut(s) 179, 256, 786
BstNI CCWGG 1 cut(s) 1364
BstNSI RCATGY 5 cut(s) 244, 263, 1204, 1237, 1450
BstSCI CCNGG 2 cut(s) 285, 1362
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 2 cut(s) 125, 1086
BstV1I GCAGC 2 cut(s) 191, 992
BstV2I GAAGAC 2 cut(s) 231, 528
BstX2I RGATCY 2 cut(s) 91, 1558
BstYI RGATCY 2 cut(s) 91, 1558
BsuRI GGCC 2 cut(s) 503, 1117
BtgI CCRYGG 1 cut(s) 1147
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 5 cut(s) 295, 457, 876, 919, 1616
BtsIMutI CAGTG 5 cut(s) 78, 420, 1158, 1248, 1280
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 5 cut(s) 54, 261, 778, 791, 838
CaiI CAGNNNCTG 1 cut(s) 708
CciI TCATGA 1 cut(s) 885
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 874, 1061
Csp6I GTAC 4 cut(s) 40, 482, 1069, 1441
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviQI GTAC 4 cut(s) 40, 482, 1069, 1441
DdeI CTNAG 2 cut(s) 84, 1572
DpnI GATC 7 cut(s) 93, 299, 693, 713, 1028, 1181, 1560
DpnII GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
Eam1104I CTCTTC 4 cut(s) 402, 1286, 1448, 1529
EarI CTCTTC 4 cut(s) 402, 1286, 1448, 1529
Eco130I CCWWGG 1 cut(s) 1147
Eco24I GRGCYC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 874, 1061
EcoRII CCWGG 1 cut(s) 1362
EcoT14I CCWWGG 1 cut(s) 1147
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 1147
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 2 cut(s) 1074, 1205
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 997
Fnu4HI GCNGC 3 cut(s) 180, 841, 981
FokI GGATG 5 cut(s) 302, 464, 883, 926, 1603
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 3 cut(s) 180, 841, 981
FspBI CTAG 2 cut(s) 851, 1311
GlaI GCGC 1 cut(s) 154
GluI GCNGC 3 cut(s) 180, 841, 981
HaeIII GGCC 2 cut(s) 503, 1117
HapII CCGG 2 cut(s) 286, 1337
HhaI GCGC 1 cut(s) 155
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HindIII AAGCTT 2 cut(s) 104, 612
HinfI GANTC 5 cut(s) 143, 827, 973, 1218, 1270
HpaII CCGG 2 cut(s) 286, 1337
HphI GGTGA 2 cut(s) 947, 1558
Hpy166II GTNNAC 6 cut(s) 123, 328, 1093, 1141, 1239, 1508
Hpy188I TCNGA 4 cut(s) 20, 148, 867, 1432
Hpy188III TCNNGA 7 cut(s) 570, 709, 760, 886, 947, 1030, 1337
Hpy8I GTNNAC 6 cut(s) 123, 328, 1093, 1141, 1239, 1508
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 5 cut(s) 82, 143, 1015, 1027, 1481
HpyCH4III ACNGT 8 cut(s) 73, 120, 415, 548, 646, 704, 1088, 1243
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 9 cut(s) 123, 204, 263, 455, 515, 627, 980, 1169, 1401
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 256, 786
HpyF3I CTNAG 2 cut(s) 84, 1572
HpySE526I ACGT 1 cut(s) 525
HspAI GCGC 1 cut(s) 153
Kpn2I TCCGGA 1 cut(s) 1336
Kzo9I GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
LmnI GCTCC 2 cut(s) 49, 649
Lsp1109I GCAGC 2 cut(s) 191, 992
LweI GCATC 3 cut(s) 442, 459, 519
MaeI CTAG 2 cut(s) 851, 1311
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 5 cut(s) 140, 281, 1196, 1229, 1278
MalI GATC 7 cut(s) 93, 299, 693, 713, 1028, 1181, 1560
MbiI CCGCTC 1 cut(s) 840
MboI GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
MboII GAAGA 8 cut(s) 236, 389, 478, 533, 1088, 1303, 1465, 1546
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 2 cut(s) 91, 1558
MhlI GDGCHC 5 cut(s) 125, 748, 883, 1086, 1131
MluCI AATT 4 cut(s) 516, 586, 635, 686
MlyI GAGTC 3 cut(s) 137, 821, 1227
MmeI TCCRAC 1 cut(s) 1410
MnlI CCTC 5 cut(s) 493, 789, 796, 861, 1493
Mph1103I ATGCAT 1 cut(s) 265
MroI TCCGGA 1 cut(s) 1336
MroXI GAANNNNTTC 3 cut(s) 815, 861, 1512
MseI TTAA 4 cut(s) 618, 921, 1008, 1553
MslI CAYNNNNRTG 4 cut(s) 33, 1244, 1263, 1621
MspI CCGG 2 cut(s) 286, 1337
MspR9I CCNGG 2 cut(s) 287, 1364
MunI CAATTG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 1364
MwoI GCNNNNNNNGC 3 cut(s) 179, 256, 786
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 1147
NdeI CATATG 1 cut(s) 997
NdeII GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
NlaIV GGNNCC 4 cut(s) 563, 764, 1062, 1085
NmuCI GTSAC 3 cut(s) 140, 1229, 1278
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 5 cut(s) 244, 263, 1204, 1237, 1450
PaeI GCATGC 1 cut(s) 263
PagI TCATGA 1 cut(s) 885
PciI ACATGT 4 cut(s) 240, 1200, 1233, 1446
PdmI GAANNNNTTC 3 cut(s) 815, 861, 1512
PfeI GAWTC 2 cut(s) 973, 1270
PflMI CCANNNNNTGG 2 cut(s) 646, 772
PkrI GCNGC 3 cut(s) 181, 842, 982
PleI GAGTC 3 cut(s) 137, 821, 1226
PpsI GAGTC 3 cut(s) 137, 821, 1226
PscI ACATGT 4 cut(s) 240, 1200, 1233, 1446
Psp6I CCWGG 1 cut(s) 1362
PspGI CCWGG 1 cut(s) 1362
PspN4I GGNNCC 4 cut(s) 563, 764, 1062, 1085
PspPI GGNCC 2 cut(s) 874, 1061
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 708
PsuI RGATCY 2 cut(s) 91, 1558
RsaI GTAC 4 cut(s) 41, 483, 1070, 1442
RsaNI GTAC 4 cut(s) 40, 482, 1069, 1441
RseI CAYNNNNRTG 4 cut(s) 33, 1244, 1263, 1621
SaqAI TTAA 4 cut(s) 618, 921, 1008, 1553
SatI GCNGC 3 cut(s) 180, 841, 981
Sau3AI GATC 7 cut(s) 91, 297, 691, 711, 1026, 1179, 1558
Sau96I GGNCC 2 cut(s) 874, 1061
ScaI AGTACT 1 cut(s) 1070
SchI GAGTC 3 cut(s) 137, 821, 1227
ScrFI CCNGG 2 cut(s) 287, 1364
SduI GDGCHC 5 cut(s) 125, 748, 883, 1086, 1131
SfaNI GCATC 3 cut(s) 442, 459, 519
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 874, 1061
SmiMI CAYNNNNRTG 4 cut(s) 33, 1244, 1263, 1621
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
SpeI ACTAGT 1 cut(s) 850
SphI GCATGC 1 cut(s) 263
Sse9I AATT 4 cut(s) 516, 586, 635, 686
SsiI CCGC 3 cut(s) 56, 840, 1569
SspMI CTAG 2 cut(s) 851, 1311
StyD4I CCNGG 2 cut(s) 285, 1362
StyI CCWWGG 1 cut(s) 1147
TaaI ACNGT 8 cut(s) 73, 120, 415, 548, 646, 704, 1088, 1243
TaiI ACGT 1 cut(s) 528
TaqI TCGA 5 cut(s) 405, 690, 855, 948, 1301
TaqII GACCGA 1 cut(s) 891
TasI AATT 4 cut(s) 516, 586, 635, 686
TatI WGTACW 3 cut(s) 39, 481, 1068
TauI GCSGC 1 cut(s) 843
TfiI GAWTC 2 cut(s) 973, 1270
Tru1I TTAA 4 cut(s) 618, 921, 1008, 1553
Tru9I TTAA 4 cut(s) 618, 921, 1008, 1553
TscAI CASTG 5 cut(s) 78, 420, 1165, 1248, 1287
TseFI GTSAC 3 cut(s) 140, 1229, 1278
TseI GCWGC 2 cut(s) 179, 980
Tsp45I GTSAC 3 cut(s) 140, 1229, 1278
TspDTI ATGAA 8 cut(s) 182, 423, 473, 808, 824, 860, 944, 1262
TspRI CASTG 5 cut(s) 78, 420, 1165, 1248, 1287
Van91I CCANNNNNTGG 2 cut(s) 646, 772
VneI GTGCAC 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 874, 1061
XapI RAATTY 2 cut(s) 635, 686
XceI RCATGY 5 cut(s) 244, 263, 1204, 1237, 1450
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmnI GAANNNNTTC 3 cut(s) 815, 861, 1512
XspI CTAG 2 cut(s) 851, 1311
ZrmI AGTACT 1 cut(s) 1070
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.