Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

4368500 .. 4368904

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTTCTGCTGATGCTGCTACGACAAATTTCGATGGCTTTGGCTACCGGTTGGACTGCTCCTTCCGTCCAATGGGGCCGATTGGTCATGTAGGCTGTTTGGCGGCGACTGCGCGACTCCGGTTGGGTCCGATGGCGCCGTTTGGACCAATTGATGACTGGAATTTGTGGCCGCCGGAGATTCGAAGAAGGTGGCAGGGAAAGGCAGCGTTGCTAACCTGGAAGAGGAAAGGGATATGGGCTTGGATCTGGGCTTTTGGGCCTGGGTTTGAGCATACCCCTTTATGCAGGCCTTTTGGGGGACCTGAGCCAAAGTTTGCCAAGAAATTATCTACTCCATCTCACGTTACATCCTCGAGGTCTGATCGGGGAGAGGCTACCCTACTACTAAGAGCAAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

10.59

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	136
AccII	CGCG	1 cut(s)	115
AciI	CCGC	2 cut(s)	104, 173
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	28, 163
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	73, 225, 299
AgeI	ACCGGT	1 cut(s)	48
AjnI	CCWGG	2 cut(s)	218, 262
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	4 cut(s)	77, 170, 260, 290
ApeKI	GCWGC	2 cut(s)	17, 206
ApoI	RAATTY	2 cut(s)	28, 163
AsiGI	ACCGGT	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	115, 139
AspS9I	GGNCC	5 cut(s)	77, 128, 146, 260, 302
AsuII	TTCGAA	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	3 cut(s)	128, 146, 302
BanI	GGYRCC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	4, 218
BccI	CCATC	3 cut(s)	29, 127, 346
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	220, 264
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	4 cut(s)	18, 105, 173, 207
BlsI	GCNGC	4 cut(s)	19, 106, 174, 208
Bme1390I	CCNGG	2 cut(s)	220, 264
Bme18I	GGWCC	3 cut(s)	128, 146, 302
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	5 cut(s)	77, 128, 146, 260, 302
BmiI	GGNNCC	4 cut(s)	78, 129, 138, 303
BmrFI	CCNGG	2 cut(s)	220, 264
BmsI	GCATC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	2 cut(s)	48, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 225, 299
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	220, 264
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	73, 225, 299
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	4, 218
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	4 cut(s)	79, 172, 262, 292
BshNI	GGYRCC	1 cut(s)	136
BshTI	ACCGGT	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	3 cut(s)	49, 121, 176
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	3 cut(s)	73, 225, 299
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	4 cut(s)	79, 172, 262, 292
BsoBI	CYCGRG	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	246, 364
BspACI	CCGC	2 cut(s)	104, 173
BspANI	GGCC	4 cut(s)	79, 172, 262, 292
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	4 cut(s)	78, 129, 138, 303
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	246, 364
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	220, 264
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	306, 389
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	115, 139
BstKTI	GATC	2 cut(s)	249, 367
BstMBI	GATC	2 cut(s)	246, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 110
BstNI	CCWGG	2 cut(s)	220, 264
BstSCI	CCNGG	2 cut(s)	218, 262
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	4, 218
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	79, 172, 262, 292
BtsCI	GGATG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	2 cut(s)	115, 139
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	5 cut(s)	77, 128, 146, 260, 302
CspAI	ACCGGT	1 cut(s)	48
CviAII	CATG	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	306, 389
DinI	GGCGCC	1 cut(s)	138
DpnI	GATC	2 cut(s)	248, 366
DpnII	GATC	2 cut(s)	246, 364
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	292
Eco47I	GGWCC	3 cut(s)	128, 146, 302
Eco88I	CYCGRG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	218, 262
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
FaeI	CATG	1 cut(s)	92
FaiI	YATR	4 cut(s)	90, 238, 276, 286
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	4 cut(s)	18, 105, 173, 207
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	18, 105, 173, 207
GlaI	GCGC	2 cut(s)	114, 138
GluI	GCNGC	4 cut(s)	18, 105, 173, 207
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	79, 172, 262, 292
HapII	CCGG	3 cut(s)	49, 121, 176
HhaI	GCGC	2 cut(s)	115, 139
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	2 cut(s)	113, 137
HinP1I	GCGC	2 cut(s)	113, 137
HinfI	GANTC	2 cut(s)	117, 181
HpaII	CCGG	3 cut(s)	49, 121, 176
Hpy188I	TCNGA	2 cut(s)	132, 364
HpyAV	CCTTC	2 cut(s)	73, 183
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 110
HpyF3I	CTNAG	2 cut(s)	306, 389
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	2 cut(s)	113, 137
KasI	GGCGCC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	246, 364
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	4, 218
LweI	GCATC	1 cut(s)	4
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	248, 366
MboI	GATC	2 cut(s)	246, 364
MboII	GAAGA	2 cut(s)	198, 235
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	4 cut(s)	28, 150, 163, 326
Mly113I	GGCGCC	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	219, 351, 364, 367, 393
MspI	CCGG	3 cut(s)	49, 121, 176
MspR9I	CCNGG	2 cut(s)	220, 264
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	220, 264
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	17, 110
NarI	GGCGCC	1 cut(s)	137
NdeII	GATC	2 cut(s)	246, 364
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	4 cut(s)	78, 129, 138, 303
NspV	TTCGAA	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	181
PinAI	ACCGGT	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	19, 106, 174, 208
PleI	GAGTC	1 cut(s)	111
PluTI	GGCGCC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	218, 262
PspGI	CCWGG	2 cut(s)	218, 262
PspN4I	GGNNCC	4 cut(s)	78, 129, 138, 303
PspPI	GGNCC	5 cut(s)	77, 128, 146, 260, 302
PspPPI	RGGWCCY	1 cut(s)	302
PspXI	VCTCGAGB	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	246
SatI	GCNGC	4 cut(s)	18, 105, 173, 207
Sau3AI	GATC	2 cut(s)	246, 364
Sau96I	GGNCC	5 cut(s)	77, 128, 146, 260, 302
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	220, 264
SetI	ASST	6 cut(s)	194, 221, 307, 348, 362, 404
SfaNI	GCATC	1 cut(s)	4
SfoI	GGCGCC	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	355
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	3 cut(s)	128, 146, 302
SlaI	CTCGAG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	28, 150, 163, 326
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	104, 173
SspDI	GGCGCC	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	218, 262
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	33, 184, 356
TasI	AATT	4 cut(s)	28, 150, 163, 326
TauI	GCSGC	2 cut(s)	107, 175
TfiI	GAWTC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	17, 206
TspGWI	ACGGA	1 cut(s)	56
VpaK11BI	GGWCC	3 cut(s)	128, 146, 302
XagI	CCTNNNNNAGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	28, 163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.