Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

13362987 .. 13363386

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTCCTACCCTTGGATGGCGTCATCCCTGAACTCAACAACTTCGGACTGCAGTTGGTTGTGGTGGCAGCTGACAAGCCACGGCCTGACATCGTGGTGAGATTGATTGGGTATGGACACTGGTCCCCAGCAGCGGCGACATATGTTGTCATGTACCTGAAGGTTTTTGGTGGACCTGAGCCAAAGCTTTCCCGTAAATTATCTACTCCGTCTCGCATAACATCCTCAAGGTCTGATCAGGGAGAGGCTAGCCCTACTAATAAGGGCAAGGAGGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.0

Weight (kDa)

9.45

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	13, 17, 133
AluBI	AGCT	3 cut(s)	71, 187, 278
AluI	AGCT	3 cut(s)	71, 187, 278
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	68, 131
AspS9I	GGNCC	3 cut(s)	4, 123, 173
AsuHPI	GGTGA	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	248
AvaII	GGWCC	3 cut(s)	4, 123, 173
BbvI	GCAGC	2 cut(s)	80, 143
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	98
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	50
BisI	GCNGC	3 cut(s)	69, 132, 135
BlsI	GCNGC	3 cut(s)	70, 133, 136
Bme18I	GGWCC	3 cut(s)	4, 123, 173
BmgT120I	GGNCC	3 cut(s)	4, 123, 173
BmiI	GGNNCC	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	252
BoxI	GACNNNNGTC	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	12, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 17, 133
Bse1I	ACTGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	12, 80
BseGI	GGATG	3 cut(s)	22, 24, 221
BseLI	CCNNNNNNNGG	3 cut(s)	13, 17, 133
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	80, 143
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	13, 17, 133
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	54
BspOI	GCTAGC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	12, 80
BssMI	GATC	1 cut(s)	235
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	22, 24, 221
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	235
BstPAI	GACNNNNGTC	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	80, 143
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	22, 24, 221
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	250
Cfr13I	GGNCC	3 cut(s)	4, 123, 173
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	8 cut(s)	71, 79, 85, 181, 187, 248, 252, 278
CviKI_1	RGCY	8 cut(s)	71, 79, 85, 181, 187, 248, 252, 278
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	3 cut(s)	4, 123, 173
Eco57I	CTGAAG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	114, 142, 144, 152, 218
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	69, 132, 135
FokI	GGATG	3 cut(s)	11, 29, 208
Fsp4HI	GCNGC	3 cut(s)	69, 132, 135
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	3 cut(s)	69, 132, 135
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	85
HgaI	GACGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	185
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	47, 235
Hpy8I	GTNNAC	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	7 cut(s)	42, 99, 106, 141, 170, 189, 224
Lsp1109I	GCAGC	2 cut(s)	80, 143
MaeI	CTAG	1 cut(s)	249
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	3 cut(s)	235, 238, 265
MseI	TTAA	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	71, 134
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	70, 133, 136
PshAI	GACNNNNGTC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	4, 123, 173
PstI	CTGCAG	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	3 cut(s)	69, 132, 135
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	3 cut(s)	4, 123, 173
SetI	ASST	8 cut(s)	73, 159, 165, 178, 189, 233, 276, 280
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	3 cut(s)	4, 123, 173
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	12
TasI	AATT	1 cut(s)	197
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	2 cut(s)	68, 131
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	4, 123, 173
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.