FvH4_2g12592

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000607
Physical Location & Seq
Reverse (-)
11061081 .. 11061682
602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12592.t1

Sequence Viewer

Length: 453 bp
ATGAGGTCGAGCGTTCTGCTAAGGTTTTGCCTTGGTGGTGTCTTGGCAATTTTGGACGGAGGGGTTGGATCTTCCAATCCTCTTGGCTATTCTGATGAGATCGGCGACGGTGGAGAAATTTGTTGGCAACAAAATCAAGCAATCGGAGTCCGGTCTCCGTCTTTTGGGCTGCAGCTTGATGAAGAAATCATTCTCGGTCTAGTCAAGCGTCGGAGCTTCGGTTGCGCGTCAAGGTTGGTCGGTGGTGGTGGTTTTAGCGATATCATTCCAGACGATCGGCTATGTCTCAACTTGGTACTCCGCAACGGTGGTGATTTGATTGGGACTATGCCCGAGGATTGGAGTAAAGGGGCTGAGTCCGATTCTCTGACTCTTAGGCGGTTTGGCGGTGTATGTGAAGGCGGTCTGACGCCGGCTCTCACTGACGGCGTGATGGCTATGGCTGAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.65

Weight (kDa)

4.47

Isoelectric Point (pI)

68.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 4 cut(s) 301, 379, 387, 402
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 164, 339
AluBI AGCT 2 cut(s) 175, 216
AluI AGCT 2 cut(s) 175, 216
Alw26I GTCTC 2 cut(s) 159, 290
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 169, 172
ApoI RAATTY 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 227
AsuHPI GGTGA 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 332
BbvI GCAGC 2 cut(s) 156, 184
BccI CCATC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 159, 290
BfaI CTAG 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 2 cut(s) 170, 173
BlsI GCNGC 2 cut(s) 171, 174
BmeT110I CYCGRG 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 31, 333
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 339
Bse118I RCCGGY 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 31, 333
BseLI CCNNNNNNNGG 2 cut(s) 164, 339
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 156, 184
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 151, 413
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 2 cut(s) 164, 339
BsmAI GTCTC 2 cut(s) 159, 290
BsmFI GGGAC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 3 cut(s) 68, 99, 274
BspACI CCGC 4 cut(s) 301, 379, 387, 402
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 31, 333
BssMI GATC 3 cut(s) 68, 99, 274
BssNI GRCGYC 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 110, 308
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 20, 354, 374
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 3 cut(s) 71, 102, 277
BstMAI GTCTC 2 cut(s) 159, 290
BstMBI GATC 3 cut(s) 68, 99, 274
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 170
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 156, 184
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 412
CseI GACGC 3 cut(s) 197, 216, 418
Csp6I GTAC 1 cut(s) 296
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 3 cut(s) 20, 354, 374
DpnI GATC 3 cut(s) 70, 101, 276
DpnII GATC 3 cut(s) 68, 99, 274
Eco130I CCWWGG 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 332
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaiI YATR 4 cut(s) 283, 329, 394, 440
FaqI GGGAC 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 170, 173
Fsp4HI GCNGC 2 cut(s) 170, 173
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 170, 173
HapII CCGG 2 cut(s) 151, 413
HgaI GACGC 3 cut(s) 197, 216, 418
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 410
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 4 cut(s) 147, 356, 362, 370
HpaII CCGG 2 cut(s) 151, 413
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 6 cut(s) 94, 146, 213, 361, 369, 408
Hpy188III TCNNGA 1 cut(s) 269
Hpy99I CGWCG 2 cut(s) 110, 213
HpyAV CCTTC 2 cut(s) 392, 440
HpyCH4III ACNGT 2 cut(s) 110, 308
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 3 cut(s) 20, 354, 374
Hsp92I GRCGYC 1 cut(s) 410
HspAI GCGC 1 cut(s) 225
KroI GCCGGC 1 cut(s) 412
KroNI GCCGGC 1 cut(s) 414
Kzo9I GATC 3 cut(s) 68, 99, 274
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 3 cut(s) 164, 282, 426
Lsp1109I GCAGC 2 cut(s) 156, 184
MaeI CTAG 1 cut(s) 200
MalI GATC 3 cut(s) 70, 101, 276
MboI GATC 3 cut(s) 68, 99, 274
MboII GAAGA 2 cut(s) 63, 194
MflI RGATCY 1 cut(s) 68
MluCI AATT 2 cut(s) 48, 117
MlyI GAGTC 3 cut(s) 156, 364, 365
MmeI TCCRAC 2 cut(s) 46, 191
MnlI CCTC 3 cut(s) 53, 90, 328
MroNI GCCGGC 1 cut(s) 412
MroXI GAANNNNTTC 1 cut(s) 189
MspI CCGG 2 cut(s) 151, 413
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 222
NaeI GCCGGC 1 cut(s) 414
NdeII GATC 3 cut(s) 68, 99, 274
NgoMIV GCCGGC 1 cut(s) 412
PdiI GCCGGC 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 2 cut(s) 171, 174
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 3 cut(s) 155, 364, 364
PpsI GAGTC 3 cut(s) 155, 364, 364
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 68
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SatI GCNGC 2 cut(s) 170, 173
Sau3AI GATC 3 cut(s) 68, 99, 274
SchI GAGTC 3 cut(s) 156, 364, 365
SetI ASST 5 cut(s) 8, 26, 177, 218, 236
SfcI CTRYAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 48, 117
SsiI CCGC 4 cut(s) 301, 379, 387, 402
SspMI CTAG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 110, 308
TaqI TCGA 1 cut(s) 8
TaqII GACCGA 1 cut(s) 185
TasI AATT 2 cut(s) 48, 117
TfiI GAWTC 1 cut(s) 362
TscAI CASTG 1 cut(s) 427
TseI GCWGC 2 cut(s) 169, 172
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 2 cut(s) 72, 147
TspRI CASTG 1 cut(s) 427
XapI RAATTY 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.