Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

13602097 .. 13603033

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20111.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGAGCAAAGCCTTCCAATCTCCGCAACGTCACCACAGCCGCCTTGAAGGATGGATTCAGAGACCGCGGGTTTGTTTTCGTGGTTTTGCGACAACGGATGCCGTGCCTAGCCTCGAACCTCTTGGTGAGCTTGGGGGGAGTCCTCGAAGGGAGGCTCGTCATGAAAATGAGGGTCGTAGTGGCCGCTGGCGCGAGAAGCAGCTTGATGCCTTTGGGTTTTGTACGAATTGCTGGGCATTCAAAAGAAAATCGCCACGAACTTTGTTTCACGTCAATTCTCCACAGAGCTCCACTTCTAAACCGCATCTATCCCTCAATGGCATCTGTTGTTGCTACCGCAACAAGCTTTGCTGATTTTGGCTTTGACTACCGTCGGCGTTTCTTCCGTTTGTTGAGGCAGATTGGACATGAAGGCTGCAAGGCCGCGACTGTAGGGCTCCGGGTGGGCCTGGCTGTGCCAATGGAGCCAGTTGATGACTGGAAAGTGTGGCCGCTCGAGATCCGCAGATGGTGGCAGGCGAGAACGTCACCGCCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.26

Weight (kDa)

11.39

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	496
AccII	CGCG	3 cut(s)	69, 194, 428
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	2 cut(s)	183, 491
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	49, 243
AjiI	CACGTC	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	4 cut(s)	132, 204, 290, 348
AluI	AGCT	4 cut(s)	132, 204, 290, 348
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	496
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	4 cut(s)	183, 423, 448, 491
ApeKI	GCWGC	2 cut(s)	201, 417
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	3 cut(s)	25, 139, 522
AvaI	CYCGRG	1 cut(s)	497
BanII	GRGCYC	2 cut(s)	292, 441
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	213, 404
BccI	CCATC	2 cut(s)	47, 504
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	452
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	110, 541
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	6 cut(s)	42, 186, 202, 418, 426, 494
BlsI	GCNGC	6 cut(s)	43, 187, 203, 419, 427, 495
Bme1390I	CCNGG	2 cut(s)	443, 452
BmeT110I	CYCGRG	1 cut(s)	497
BmgBI	CACGTC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	440, 468
BmrFI	CCNGG	2 cut(s)	443, 452
BmsI	GCATC	4 cut(s)	90, 198, 315, 332
BoxI	GACNNNNGTC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	470, 485
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	2 cut(s)	58, 105
BseNI	ACTGG	2 cut(s)	470, 485
BseXI	GCAGC	2 cut(s)	213, 404
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	3 cut(s)	69, 194, 428
BshFI	GGCC	4 cut(s)	185, 425, 450, 493
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	4 cut(s)	185, 425, 450, 493
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	292, 441
Bsp143I	GATC	1 cut(s)	501
BspANI	GGCC	4 cut(s)	185, 425, 450, 493
BspFNI	CGCG	3 cut(s)	69, 194, 428
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	440, 468
BspPI	GGATC	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	470, 485
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	374, 433
BstC8I	GCNNGC	3 cut(s)	6, 190, 519
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	2 cut(s)	58, 105
BstFNI	CGCG	3 cut(s)	69, 194, 428
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	504
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 191, 198, 466
BstNI	CCWGG	1 cut(s)	452
BstPAI	GACNNNNGTC	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	441, 450
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	3 cut(s)	69, 194, 428
BstV1I	GCAGC	2 cut(s)	213, 404
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	185, 425, 450, 493
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	58, 105
Cac8I	GCNNGC	3 cut(s)	6, 190, 519
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	448
Cfr42I	CCGCGG	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	224
CspCI	CAANNNNNGTGG	2 cut(s)	245, 280
CviAII	CATG	2 cut(s)	163, 410
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
EaeI	YGGCCR	2 cut(s)	183, 491
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	2 cut(s)	292, 441
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	450
EcoT38I	GRGCYC	2 cut(s)	292, 441
FaeI	CATG	2 cut(s)	166, 413
FaiI	YATR	2 cut(s)	164, 411
FatI	CATG	2 cut(s)	162, 409
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	6 cut(s)	42, 186, 202, 418, 426, 494
FokI	GGATG	2 cut(s)	65, 112
FriOI	GRGCYC	2 cut(s)	292, 441
Fsp4HI	GCNGC	6 cut(s)	42, 186, 202, 418, 426, 494
FspBI	CTAG	2 cut(s)	110, 541
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	6 cut(s)	42, 186, 202, 418, 426, 494
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	185, 425, 450, 493
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	166, 413
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	2 cut(s)	57, 141
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	3 cut(s)	25, 139, 522
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	2 cut(s)	163, 499
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	4 cut(s)	24, 43, 143, 407
HpyCH4III	ACNGT	2 cut(s)	374, 433
HpyCH4IV	ACGT	3 cut(s)	30, 272, 527
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 191, 198, 466
HpySE526I	ACGT	3 cut(s)	30, 272, 527
Hsp92II	CATG	2 cut(s)	166, 413
HspAI	GCGC	1 cut(s)	192
KspI	CCGCGG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	3 cut(s)	295, 444, 466
LpnPI	CCDG	8 cut(s)	174, 219, 437, 455, 464, 466, 483, 503
Lsp1109I	GCAGC	2 cut(s)	213, 404
LweI	GCATC	4 cut(s)	90, 198, 315, 332
MaeI	CTAG	2 cut(s)	110, 541
MaeII	ACGT	3 cut(s)	30, 272, 527
MaeIII	GTNAC	2 cut(s)	31, 528
MalI	GATC	1 cut(s)	503
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	1 cut(s)	501
MboII	GAAGA	1 cut(s)	376
MflI	RGATCY	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	292, 441
MluCI	AATT	2 cut(s)	228, 276
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	7 cut(s)	124, 131, 147, 155, 165, 325, 390
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	2 cut(s)	69, 188
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	2 cut(s)	443, 452
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	3 cut(s)	69, 194, 428
MwoI	GCNNNNNNNGC	4 cut(s)	10, 191, 198, 466
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	2 cut(s)	166, 413
NlaIV	GGNNCC	2 cut(s)	440, 468
NmuCI	GTSAC	2 cut(s)	31, 528
PaeR7I	CTCGAG	1 cut(s)	497
PagI	TCATGA	1 cut(s)	162
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	43, 187, 203, 419, 427, 495
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PshAI	GACNNNNGTC	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	440, 468
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	501
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	292
SacII	CCGCGG	1 cut(s)	70
SatI	GCNGC	6 cut(s)	42, 186, 202, 418, 426, 494
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	443, 452
SduI	GDGCHC	2 cut(s)	292, 441
SetI	ASST	9 cut(s)	33, 123, 134, 206, 275, 292, 350, 530, 542
SfaNI	GCATC	4 cut(s)	90, 198, 315, 332
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	497
Sfr303I	CCGCGG	1 cut(s)	70
SgrBI	CCGCGG	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	228, 276
SspMI	CTAG	2 cut(s)	110, 541
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	441, 450
TaaI	ACNGT	2 cut(s)	374, 433
TaiI	ACGT	3 cut(s)	33, 275, 530
TaqI	TCGA	3 cut(s)	116, 147, 498
TasI	AATT	2 cut(s)	228, 276
TauI	GCSGC	4 cut(s)	44, 188, 428, 496
TfiI	GAWTC	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	31, 528
TseI	GCWGC	2 cut(s)	201, 417
Tsp45I	GTSAC	2 cut(s)	31, 528
TspDTI	ATGAA	2 cut(s)	179, 426
TspGWI	ACGGA	2 cut(s)	112, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	497
XspI	CTAG	2 cut(s)	110, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.