Rmu_sc0002268.1_g000018

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002268.1
Physical Location & Seq
Forward (+)
86155 .. 86526
372 bp
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UTR
Exon/CDS
Intron
Rmu_sc0002268.1_g000018.1.cds

Sequence Viewer

Length: 372 bp
atgtgggatgaagtcactccagatggttttgaaaaacgctggaatgctatggttaacacacatggtctccacaataaggattgggttaagatgatgtatgaaaagaggcaaatatgggcagaggcatttattagtggccatttttttgcccgtatgagaagcactcagagatgtgagggtatgaacagctatatgaagggttatctgaaaagcggtgtgaaattatttgaacttattccggcacttgatagggcattgttacggcttaggaacaaggttgtggaagaggattttaagtccaataactctagtcatgtccttacttcttcacttcgaaaattggaagatcatgcaggtattattttcacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

14.47

Weight (kDa)

9.33

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AciI CCGC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 32, 230
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 234
AsuII TTCGAA 1 cut(s) 334
BalI TGGCCA 1 cut(s) 138
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 148, 180
Bpu10I CCTNAGC 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 71
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 334
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 344
BspT104I TTCGAA 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 71
BssMI GATC 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 279
BstBI TTCGAA 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 165, 266
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 346
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 344
CviAII CATG 3 cut(s) 62, 314, 350
CviJI RGCY 3 cut(s) 138, 189, 265
CviKI_1 RGCY 3 cut(s) 138, 189, 265
DdeI CTNAG 2 cut(s) 165, 266
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 71
FaeI CATG 3 cut(s) 65, 317, 353
FatI CATG 3 cut(s) 61, 313, 349
FokI GGATG 1 cut(s) 20
FspBI CTAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 239
Hin1II CATG 3 cut(s) 65, 317, 353
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 168, 207
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 353
HpyF3I CTNAG 2 cut(s) 165, 266
Hsp92II CATG 3 cut(s) 65, 317, 353
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 346
LpnPI CCDG 4 cut(s) 25, 33, 252, 339
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 13, 258
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 3 cut(s) 296, 318, 356
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 2 cut(s) 221, 338
MluNI TGGCCA 1 cut(s) 138
MnlI CCTC 4 cut(s) 99, 115, 169, 280
Mox20I TGGCCA 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 138
MseI TTAA 3 cut(s) 54, 87, 294
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 49
NdeII GATC 1 cut(s) 346
NlaIII CATG 3 cut(s) 65, 317, 353
NmuCI GTSAC 1 cut(s) 13
NspV TTCGAA 1 cut(s) 334
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 54, 87, 294
Sau3AI GATC 1 cut(s) 346
SetI ASST 3 cut(s) 191, 279, 358
SfuI TTCGAA 1 cut(s) 334
Sse9I AATT 2 cut(s) 221, 338
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 309
TaqI TCGA 1 cut(s) 334
TasI AATT 2 cut(s) 221, 338
Tru1I TTAA 3 cut(s) 54, 87, 294
Tru9I TTAA 3 cut(s) 54, 87, 294
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 24, 114, 197, 209
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.