Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

48875980 .. 48876582

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009213

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAAACAAAGTAGTAAAGATTTGGAGGTTCAAATGAAGATGCACACCACCTGTTCGATTAAATGCTCAACTTCGAGATGTGGCTATTGCTTTGATGATTGCTCAACCTATTCGATAAATGTAACTGTTAAAAATTTCATGGTTGTTTTGACAGGTAGCCTTATGGTCCCCGCATTAGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATTCATGTGCACACATGTTCCGCTGTTAAAGAAGGATTTTGCATCCATATCGCCGATGTCACTAAAAGACCATGCGGCACATGCGCACACCTGTACAACGTCGATCCAGACAACAAAAAGAGATGCAGTTGTATCTTATGCCACTGGGAAGAGGAACAAGATAGGAATGCCAATTCACCTCCCTCAGGTTATTGGTGGTGGCCTAGTGACTCTGAATTCTCTCCAGATATTGATGATTTTCACCAAGCAAGTGTTCTGTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

19.02

Weight (kDa)

5.51

Isoelectric Point (pI)

56.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	319
AciI	CCGC	3 cut(s)	171, 255, 309
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	133, 449
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	1 cut(s)	471
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	434
ApaLI	GTGCAC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	133, 449
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	402, 467
AvaII	GGWCC	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	388
BmsI	GCATC	3 cut(s)	30, 285, 347
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	383
Bse21I	CCTNAGG	1 cut(s)	418
BseGI	GGATG	2 cut(s)	276, 501
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	383
BseSI	GKGCMC	1 cut(s)	246
BshFI	GGCC	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	3 cut(s)	171, 255, 309
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	418
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	276, 501
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	252, 318
BstSLI	GKGCMC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	225
Bsu36I	CCTNAGG	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	276, 501
BtsIMutI	CAGTG	1 cut(s)	376
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	5 cut(s)	139, 239, 249, 306, 315
CviJI	RGCY	4 cut(s)	84, 159, 232, 436
CviKI_1	RGCY	4 cut(s)	84, 159, 232, 436
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	418
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	449
FaeI	CATG	5 cut(s)	142, 242, 252, 309, 318
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	138, 238, 248, 305, 314
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	310
FspAI	RTGCGCAY	1 cut(s)	319
FspBI	CTAG	1 cut(s)	438
FspI	TGCGCA	1 cut(s)	319
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	436
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	5 cut(s)	142, 242, 252, 309, 318
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	224, 443
HphI	GGTGA	2 cut(s)	402, 467
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	202, 448
Hpy188III	TCNNGA	3 cut(s)	75, 341, 458
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	208, 260
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	43, 244, 276, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	418
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	5 cut(s)	142, 242, 252, 309, 318
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	64, 138, 338, 354, 364, 405, 471
LweI	GCATC	3 cut(s)	30, 285, 347
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	121, 292, 440
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	3 cut(s)	49, 230, 395
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	133, 234, 406, 449
MlyI	GAGTC	2 cut(s)	218, 437
MnlI	CCTC	4 cut(s)	19, 379, 423, 427
MseI	TTAA	3 cut(s)	60, 129, 261
MspA1I	CMGCKG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	5 cut(s)	142, 242, 252, 309, 318
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	292, 440
NsbI	TGCGCA	1 cut(s)	319
NspI	RCATGY	2 cut(s)	252, 318
PciI	ACATGT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	2 cut(s)	218, 437
PpsI	GAGTC	2 cut(s)	218, 437
PscI	ACATGT	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	60, 129, 261
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	218, 437
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	30, 53, 110, 157, 327, 336, 415, 424
SfaNI	GCATC	3 cut(s)	30, 285, 347
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	4 cut(s)	133, 234, 406, 449
SsiI	CCGC	3 cut(s)	171, 255, 309
SspMI	CTAG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	56, 74, 113, 336
TasI	AATT	4 cut(s)	133, 234, 406, 449
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	3 cut(s)	60, 129, 261
Tru9I	TTAA	3 cut(s)	60, 129, 261
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	2 cut(s)	292, 440
Tsp45I	GTSAC	2 cut(s)	292, 440
TspDTI	ATGAA	6 cut(s)	17, 50, 127, 195, 219, 227
TspRI	CASTG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	417
XapI	RAATTY	2 cut(s)	133, 449
XceI	RCATGY	2 cut(s)	252, 318
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.