FvH4_3g31840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000607
Physical Location & Seq
Forward (+)
26806800 .. 26807111
312 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31840.t1

Sequence Viewer

Length: 312 bp
ATGAGGATTACAATGAGACTTGGTTTTGCTTCGAGAAACCAGGAGCTTTCGCTCACCCAACTTTCCTCCCAAAACCCTAGCGTTGCGACCTCTATTGGGCGTCAATTCTCCACAGATCTCAACCTTTCAACCTTGCCTACTCATCTCACAACCTCCATGACCTCTGCTGATGCTACTATGGCAAGTTTCGCTGGCTTTGGCTACCGGCGGGACTACTCCTTCCGTCCAATAATGCCGATTGGACATGTTGGCTGTAAGGCAGTGACTGTGCGGCTCCAGTTGGGTCCGATGGTTTCCGTTTGGATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.3

Weight (kDa)

10.77

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 208, 271
AclWI GGATC 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 96
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 284
BccI CCATC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 78
BglII AGATCT 1 cut(s) 115
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 275, 285
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 115, 303
BspACI CCGC 2 cut(s) 208, 271
BspLI GGNNCC 2 cut(s) 275, 285
BspPI GGATC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 1 cut(s) 277
BssAI RCCGGY 1 cut(s) 204
BssMI GATC 2 cut(s) 115, 303
BssNI GRCGYC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 118, 306
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 2 cut(s) 115, 303
BstMWI GCNNNNNNNGC 2 cut(s) 179, 188
BstNI CCWGG 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 193
CaiI CAGNNNCTG 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 89
CviAII CATG 2 cut(s) 157, 245
CviJI RGCY 5 cut(s) 46, 195, 201, 252, 274
CviKI_1 RGCY 5 cut(s) 46, 195, 201, 252, 274
DpnI GATC 2 cut(s) 117, 305
DpnII GATC 2 cut(s) 115, 303
Eco47I GGWCC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 160, 248
FaiI YATR 3 cut(s) 158, 179, 246
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 156, 244
FauI CCCGC 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 260
HapII CCGG 1 cut(s) 205
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 160, 248
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 188
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 160, 248
Kzo9I GATC 2 cut(s) 115, 303
LmnI GCTCC 2 cut(s) 43, 279
LpnPI CCDG 5 cut(s) 26, 53, 177, 218, 290
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 117, 305
MboI GATC 2 cut(s) 115, 303
MfeI CAATTG 1 cut(s) 307
MflI RGATCY 1 cut(s) 115
MluCI AATT 2 cut(s) 104, 307
MnlI CCTC 4 cut(s) 76, 100, 163, 172
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 179, 188
NdeII GATC 2 cut(s) 115, 303
NlaIII CATG 2 cut(s) 160, 248
NlaIV GGNNCC 2 cut(s) 275, 285
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PkrI GCNGC 1 cut(s) 273
PscI ACATGT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 275, 285
PspPI GGNCC 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 115
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 2 cut(s) 115, 303
Sau96I GGNCC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 41
SetI ASST 6 cut(s) 48, 92, 126, 134, 155, 164
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 1 cut(s) 284
Sse9I AATT 2 cut(s) 104, 307
SsiI CCGC 2 cut(s) 208, 271
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 104, 307
TauI GCSGC 1 cut(s) 274
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspGWI ACGGA 2 cut(s) 212, 286
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 284
XceI RCATGY 1 cut(s) 248
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.