Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

5326727 .. 5328512

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04902.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGTCTTGTCAATTATATGGGAAGAAAATCGTGGTCAATGAAGAGTACTCTGCTAGGGTTTGCCCCTGGCGGCTCCTTGGCTATTTTGGTAAGAGGATTGAGGTCTCTTAATCTTCTTGGCTATTCTAATGACATCGTCGGCGGTGGAGCAATTTGCTGGCCTCAAAATAAAGCAAACGAAGGCCGACCTTCGTCTTATGTGTTTCTCGATCTGGTGGAGGTTCGGAGTTTCGGTTGTCGTTGGAAGGAGGCATTGATATTTCGGCTTGGTGACACTAGTCACTTGGCCTTAGATCAAGGGTGGCGTTCAGGTGTTGGTGGTCAGGTTTCCACTGGTTTCTCCGATGGTGATGTTACCGATGTCGTCTCAGTTGGTGACTCCAATAGCGTGTTCACGTGCAACTTGGGGTTAGGCGGTGTTTGGGTAGTTGGTCCGGCGTGTTACAATGGTGGCCGGGCTGCTAGGGTTCCTATGGTGGGTCTAAAGATGTCAAAAATCAGAGCTCAGTCGGCGAGCATTGGTGTCCTTAGGGCACATTTCTCCTCTGAGCATGGGAATAAGAATGGTGATAAAAACCGAAGTAGGAGAAAACTTGAAAAAACCGACCCGGCCCAATCCATTTTTGTTCGCGGCGGGCCGGACCGTCATATGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.5

Weight (kDa)

10.02

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	633
AciI	CCGC	5 cut(s)	72, 144, 417, 633, 636
AcoI	YGGCCR	1 cut(s)	454
AcvI	CACGTG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	599
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	111, 373
AoxI	GGCC	6 cut(s)	161, 184, 288, 454, 612, 638
ApeKI	GCWGC	1 cut(s)	461
AspS9I	GGNCC	4 cut(s)	434, 613, 638, 643
AsuC2I	CCSGG	2 cut(s)	458, 611
AsuHPI	GGTGA	4 cut(s)	284, 362, 389, 581
AvaII	GGWCC	2 cut(s)	434, 643
AxyI	CCTNAGG	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	508
BbrPI	CACGTG	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	2 cut(s)	458, 611
BcoDI	GTCTC	2 cut(s)	111, 373
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	3 cut(s)	56, 279, 465
BisI	GCNGC	3 cut(s)	73, 462, 634
BlsI	GCNGC	3 cut(s)	74, 463, 635
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	69, 458, 611
Bme18I	GGWCC	2 cut(s)	434, 643
BmgT120I	GGNCC	4 cut(s)	434, 613, 638, 643
BmiI	GGNNCC	2 cut(s)	76, 471
BmrFI	CCNGG	3 cut(s)	69, 458, 611
BoxI	GACNNNNGTC	2 cut(s)	193, 279
BpuMI	CCSGG	2 cut(s)	458, 611
BsaAI	YACGTR	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	67, 78
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	340
Bse21I	CCTNAGG	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	67, 78
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	3 cut(s)	384, 521, 540
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	6 cut(s)	163, 186, 290, 456, 614, 640
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	4 cut(s)	437, 457, 611, 641
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	111, 373
BsmBI	CGTCTC	1 cut(s)	373
BsnI	GGCC	6 cut(s)	163, 186, 290, 456, 614, 640
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	508, 538
Bsp143I	GATC	2 cut(s)	211, 295
BspACI	CCGC	5 cut(s)	72, 144, 417, 633, 636
BspANI	GGCC	6 cut(s)	163, 186, 290, 456, 614, 640
BspCNI	CTCAG	3 cut(s)	383, 520, 541
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	2 cut(s)	76, 471
BspTNI	GGTCTC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	67, 78
BssMI	GATC	2 cut(s)	211, 295
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	399
BstC8I	GCNNGC	3 cut(s)	161, 517, 638
BstDEI	CTNAG	5 cut(s)	292, 370, 507, 530, 549
BstFNI	CGCG	1 cut(s)	633
BstKTI	GATC	2 cut(s)	214, 298
BstMAI	GTCTC	2 cut(s)	111, 373
BstMBI	GATC	2 cut(s)	211, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	1 cut(s)	69
BstPAI	GACNNNNGTC	2 cut(s)	193, 279
BstSCI	CCNGG	3 cut(s)	67, 456, 609
BstSLI	GKGCMC	1 cut(s)	538
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	6 cut(s)	163, 186, 290, 456, 614, 640
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	161, 517, 638
Cfr13I	GGNCC	4 cut(s)	434, 613, 638, 643
CpoI	CGGWCCG	1 cut(s)	643
Csp6I	GTAC	1 cut(s)	48
CspI	CGGWCCG	1 cut(s)	643
CviAII	CATG	1 cut(s)	554
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	5 cut(s)	292, 370, 507, 530, 549
DpnI	GATC	2 cut(s)	213, 297
DpnII	GATC	2 cut(s)	211, 295
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	434, 643
Eco53kI	GAGCTC	1 cut(s)	506
Eco72I	CACGTG	1 cut(s)	399
Eco81I	CCTNAGG	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	557
FaiI	YATR	7 cut(s)	18, 20, 201, 476, 555, 651, 653
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	629
FauNDI	CATATG	1 cut(s)	651
Fnu4HI	GCNGC	3 cut(s)	73, 462, 634
FriOI	GRGCYC	1 cut(s)	508
Fsp4HI	GCNGC	3 cut(s)	73, 462, 634
FspBI	CTAG	3 cut(s)	56, 279, 465
GluI	GCNGC	3 cut(s)	73, 462, 634
HaeIII	GGCC	6 cut(s)	163, 186, 290, 456, 614, 640
HapII	CCGG	4 cut(s)	437, 457, 611, 641
Hin1II	CATG	1 cut(s)	557
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	4 cut(s)	437, 457, 611, 641
HphI	GGTGA	4 cut(s)	284, 362, 389, 581
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	4 cut(s)	228, 346, 503, 550
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	396
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	176, 201, 241
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	5 cut(s)	292, 370, 507, 530, 549
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	557
Kzo9I	GATC	2 cut(s)	211, 295
LmnI	GCTCC	2 cut(s)	80, 149
Lsp1109I	GCAGC	1 cut(s)	448
MaeI	CTAG	3 cut(s)	56, 279, 465
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	5 cut(s)	272, 281, 355, 377, 443
MalI	GATC	2 cut(s)	213, 297
MboI	GATC	2 cut(s)	211, 295
MboII	GAAGA	3 cut(s)	36, 55, 107
MhlI	GDGCHC	2 cut(s)	508, 538
MluCI	AATT	2 cut(s)	13, 153
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	89, 96, 174, 214, 244, 556
MseI	TTAA	1 cut(s)	111
MspI	CCGG	4 cut(s)	437, 457, 611, 641
MspR9I	CCNGG	3 cut(s)	69, 458, 611
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	512
NciI	CCSGG	2 cut(s)	458, 611
NdeI	CATATG	1 cut(s)	651
NdeII	GATC	2 cut(s)	211, 295
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	2 cut(s)	76, 471
NmuCI	GTSAC	3 cut(s)	272, 281, 377
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	74, 463, 635
PleI	GAGTC	1 cut(s)	374
PmaCI	CACGTG	1 cut(s)	399
PmlI	CACGTG	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	399
PshAI	GACNNNNGTC	2 cut(s)	193, 279
Psp124BI	GAGCTC	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	67
PspCI	CACGTG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	76, 471
PspPI	GGNCC	4 cut(s)	434, 613, 638, 643
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
Rsr2I	CGGWCCG	1 cut(s)	643
RsrII	CGGWCCG	1 cut(s)	643
SacI	GAGCTC	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	73, 462, 634
Sau3AI	GATC	2 cut(s)	211, 295
Sau96I	GGNCC	4 cut(s)	434, 613, 638, 643
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	3 cut(s)	69, 458, 611
SduI	GDGCHC	2 cut(s)	508, 538
SetI	ASST	7 cut(s)	107, 193, 225, 316, 330, 401, 508
SinI	GGWCC	2 cut(s)	434, 643
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	2 cut(s)	13, 153
SsiI	CCGC	5 cut(s)	72, 144, 417, 633, 636
SspMI	CTAG	3 cut(s)	56, 279, 465
SstI	GAGCTC	1 cut(s)	508
StyD4I	CCNGG	3 cut(s)	67, 456, 609
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	13, 153
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	2 cut(s)	75, 636
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	3 cut(s)	272, 281, 377
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	3 cut(s)	272, 281, 377
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	434, 643
XspI	CTAG	3 cut(s)	56, 279, 465
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.