Rw7G021280

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000607
Physical Location & Seq
Forward (+)
24617916 .. 24618650
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G021280.1

Sequence Viewer

Length: 705 bp
ATGTCTAAAGTGTCAATCAAACCTTGCCATACGTATGAGTACATGGTGGAGCAGGCGGGTGGATATAAGACAGTGGGATTTACTGAGAAGGACCGATACAAGAAGCTTGAACAAAAACGGCACACCACTTCCTTTGACAGTGACTTCGAAGGAGCACTTGCCTACATGAATGCTCTGGTAGCACAAGACCCATACTTCTACTGCAGGTTCAATGTAGATATAGAAGACAGGTTAGCAAACATGTTTTGGAGAGATGGGCATGCATTTGTTGATTTTATGTGTTACGGGGATGTGCTGATCTTTGATAGCACATACAAAACCAATGTTTACAAAAAGTCATTGGGAAGTATTTTGTTTGGTGCTGCTCTTCTTGTCAATGAAATGGTGGAGACATACACTTGGCTATTGCATTCATTTTTGGATGCAATGAATGGGAAGATGCCAATAGCTGTACTCACAGATGGAGATGAAGCCATGCGTAGTGCAATTGAAGACGTGATGCCACAAGCAAAGCACCGTCTTTGTGCTTGGTTCCTTTCCCAAAATGCCAACCCAAATTTGAAGTGCGACGAAAAGTTGAAAGCTTTTAACAGGTGCATGAGAAAATTCCAAACTGTGGAGCAGTTTGAAGTAATATGGCACGACATGGTGGAGAAATTCGATCTCCACAACAGTTTCTGGATCAACATGATGTATGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

234

Amino Acids

27.46

Weight (kDa)

5.82

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 98 - 182 6.3e-16 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 195
AccB7I CCANNNNNTGG 1 cut(s) 616
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 689
AcsI RAATTY 3 cut(s) 556, 605, 656
AfaI GTAC 2 cut(s) 41, 453
AfiI CCNNNNNNNGG 1 cut(s) 616
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 6 cut(s) 110, 211, 491, 562, 580, 629
AjiI CACGTC 1 cut(s) 496
AluBI AGCT 3 cut(s) 106, 449, 584
AluI AGCT 3 cut(s) 106, 449, 584
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 689
AlwNI CAGNNNCTG 1 cut(s) 678
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 3 cut(s) 556, 605, 656
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspS9I GGNCC 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 91
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbsI GAAGAC 2 cut(s) 231, 498
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 349
BccI CCATC 2 cut(s) 248, 455
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 195
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 533
BmsI GCATC 3 cut(s) 412, 429, 489
BpiI GAAGAC 2 cut(s) 231, 498
Bpu14I TTCGAA 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 432
BseGI GGATG 2 cut(s) 295, 427
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 1 cut(s) 383
BsmI GAATGC 2 cut(s) 175, 409
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 3 cut(s) 297, 661, 681
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 533
BspMAI CTGCAG 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 195
BspPI GGATC 1 cut(s) 689
BspQI GCTCTTC 1 cut(s) 372
BspT104I TTCGAA 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 432
BssMI GATC 3 cut(s) 297, 661, 681
Bst4CI ACNGT 5 cut(s) 73, 140, 518, 616, 674
Bst6I CTCTTC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 54, 261
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 295, 427
BstKTI GATC 3 cut(s) 300, 664, 684
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 3 cut(s) 297, 661, 681
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 244, 263
BstSFI CTRYAG 1 cut(s) 202
BstSNI TACGTA 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 2 cut(s) 231, 498
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 2 cut(s) 295, 427
BtsIMutI CAGTG 2 cut(s) 78, 145
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 54, 261
CaiI CAGNNNCTG 1 cut(s) 678
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 40, 452
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 8 cut(s) 43, 166, 241, 260, 475, 598, 646, 688
CviJI RGCY 5 cut(s) 106, 403, 449, 473, 584
CviKI_1 RGCY 5 cut(s) 106, 403, 449, 473, 584
CviQI GTAC 2 cut(s) 40, 452
DdeI CTNAG 1 cut(s) 84
DpnI GATC 3 cut(s) 299, 663, 683
DpnII GATC 3 cut(s) 297, 661, 681
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco105I TACGTA 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 8 cut(s) 46, 169, 244, 263, 478, 601, 649, 691
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 8 cut(s) 42, 165, 240, 259, 474, 597, 645, 687
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 302, 434
Fsp4HI GCNGC 1 cut(s) 363
GluI GCNGC 1 cut(s) 363
Hin1II CATG 8 cut(s) 46, 169, 244, 263, 478, 601, 649, 691
HindIII AAGCTT 2 cut(s) 104, 582
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 679
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 82, 143
HpyCH4III ACNGT 5 cut(s) 73, 140, 518, 616, 674
HpyCH4IV ACGT 2 cut(s) 32, 495
HpyCH4V TGCA 6 cut(s) 204, 263, 409, 425, 485, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 32, 495
Hsp92II CATG 8 cut(s) 46, 169, 244, 263, 478, 601, 649, 691
Kzo9I GATC 3 cut(s) 297, 661, 681
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 3 cut(s) 49, 152, 619
LpnPI CCDG 6 cut(s) 38, 161, 190, 214, 577, 664
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 3 cut(s) 412, 429, 489
MaeII ACGT 2 cut(s) 32, 495
MaeIII GTNAC 2 cut(s) 140, 281
MalI GATC 3 cut(s) 299, 663, 683
MboI GATC 3 cut(s) 297, 661, 681
MboII GAAGA 4 cut(s) 236, 359, 448, 503
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 4 cut(s) 486, 556, 605, 656
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 33
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 2 cut(s) 175, 409
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 297, 661, 681
NlaIII CATG 8 cut(s) 46, 169, 244, 263, 478, 601, 649, 691
NlaIV GGNNCC 1 cut(s) 533
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 2 cut(s) 244, 263
NspV TTCGAA 1 cut(s) 147
PaeI GCATGC 1 cut(s) 263
PciI ACATGT 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 2 cut(s) 175, 409
PflMI CCANNNNNTGG 1 cut(s) 616
PkrI GCNGC 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 33
PscI ACATGT 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 533
PspPI GGNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 678
RsaI GTAC 2 cut(s) 41, 453
RsaNI GTAC 2 cut(s) 40, 452
RseI CAYNNNNRTG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 3 cut(s) 297, 661, 681
Sau96I GGNCC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 157
SetI ASST 9 cut(s) 25, 35, 108, 209, 233, 451, 498, 586, 596
SfaNI GCATC 3 cut(s) 412, 429, 489
SfcI CTRYAG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 33
SnaBI TACGTA 1 cut(s) 33
SphI GCATGC 1 cut(s) 263
Sse9I AATT 4 cut(s) 486, 556, 605, 656
SsiI CCGC 1 cut(s) 56
TaaI ACNGT 5 cut(s) 73, 140, 518, 616, 674
TaiI ACGT 2 cut(s) 35, 498
TaqI TCGA 2 cut(s) 147, 660
TaqII GACCGA 1 cut(s) 108
TasI AATT 4 cut(s) 486, 556, 605, 656
TatI WGTACW 2 cut(s) 39, 451
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 78, 145
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 5 cut(s) 182, 393, 402, 443, 483
TspRI CASTG 2 cut(s) 78, 145
Van91I CCANNNNNTGG 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 3 cut(s) 556, 605, 656
XceI RCATGY 2 cut(s) 244, 263
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.