Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

20797604 .. 20804051

Gene Structure 6448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTGTGACCGTCTTTGCATGGAGGACGACATGTGTTGGGTGGATCCATGCAGGTTGCGACGTGCTGACACGTGGGAAGGTACTTGACTGCCACGACTGTGAGATGGTGTTCTTCGTTTGGAGATTGGAGGCTCACTTCTTCATGTTACTGGATAATGCAAATCACTGGGGTTGGGGATATGACCAATCTGCAATGCCTTTCATAAATCTGAATTGTACCGAGCCATCGAGGGCGCTTTCACCCCCGGCCAGGTCTGCCTCATCATCGAGGACCTCGTCACCATCGGCGCCTCCGTTCTTGAAACCGTCGCTCCGTGCCGCCAGGTTGAAGGTCTGCGACGCCGTCATCTCCGATCGGTTAGACCAGTCGCGCCACCTCCTAGAGGATGCGATTGTCCTCAACCCGTCCGATCCGTCCATATCCGAGCTAGAGCTCGGCGTCATGGACGACGTCGATCAGAGGACGATGGCGAAGACAATGACCATGGAGGACGATTGCGGGGATGGTGATGACGATGGCGAGCTTGGTGTCAAGGCGGAGGCGGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.24

Weight (kDa)

4.66

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	456
Acc36I	ACCTGC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	289
AccII	CGCG	1 cut(s)	373
AciI	CCGC	4 cut(s)	321, 501, 539, 545
AclWI	GGATC	3 cut(s)	40, 53, 407
AcoI	YGGCCR	1 cut(s)	249
AcvI	CACGTG	1 cut(s)	74
AcyI	GRCGYC	4 cut(s)	290, 342, 441, 453
AfaI	GTAC	2 cut(s)	84, 220
AfiI	CCNNNNNNNGG	2 cut(s)	252, 385
AflIII	ACRYGT	2 cut(s)	32, 71
AgsI	TTSAA	2 cut(s)	304, 331
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	2 cut(s)	251, 323
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	430, 436, 526
AluI	AGCT	3 cut(s)	430, 436, 526
Alw21I	GWGCWC	1 cut(s)	438
AlwI	GGATC	3 cut(s)	40, 53, 407
AoxI	GGCC	1 cut(s)	249
AspLEI	GCGC	3 cut(s)	238, 292, 375
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	234, 273, 521
AvaII	GGWCC	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	438
BbrPI	CACGTG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	6 cut(s)	100, 235, 292, 463, 500, 512
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	2 cut(s)	253, 325
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	2 cut(s)	383, 431
BfoI	RGCGCY	2 cut(s)	239, 293
BfuAI	ACCTGC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	3 cut(s)	248, 253, 325
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	47, 291
BmrFI	CCNGG	3 cut(s)	248, 253, 325
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	74
BsaHI	GRCGYC	4 cut(s)	290, 342, 441, 453
BsaJI	CCNNGG	2 cut(s)	246, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 385
Bse1I	ACTGG	3 cut(s)	156, 173, 367
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	253, 325
BseDI	CCNNGG	2 cut(s)	246, 486
BseGI	GGATG	2 cut(s)	394, 511
BseLI	CCNNNNNNNGG	2 cut(s)	252, 385
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	156, 173, 367
Bsh1236I	CGCG	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	289
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	252, 385
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	45, 355, 412, 457
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	4 cut(s)	321, 501, 539, 545
BspANI	GGCC	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	47, 291
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	3 cut(s)	40, 53, 407
BspT107I	GGYRCC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	3 cut(s)	156, 173, 367
BssECI	CCNNGG	2 cut(s)	246, 486
BssMI	GATC	4 cut(s)	45, 355, 412, 457
BssNI	GRCGYC	4 cut(s)	290, 342, 441, 453
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	253, 325
Bst4CI	ACNGT	3 cut(s)	13, 101, 309
BstACI	GRCGYC	4 cut(s)	290, 342, 441, 453
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	524
BstDSI	CCRYGG	1 cut(s)	486
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	394, 511
BstFNI	CGCG	1 cut(s)	373
BstH2I	RGCGCY	2 cut(s)	239, 293
BstHHI	GCGC	3 cut(s)	238, 292, 375
BstKTI	GATC	4 cut(s)	48, 358, 415, 460
BstMBI	GATC	4 cut(s)	45, 355, 412, 457
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	253, 325
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	3 cut(s)	246, 251, 323
BstUI	CGCG	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	394, 511
BtsIMutI	CAGTG	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	3 cut(s)	238, 292, 375
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	2 cut(s)	350, 430
Csp6I	GTAC	2 cut(s)	83, 219
CviAII	CATG	6 cut(s)	21, 33, 50, 145, 445, 487
CviJI	RGCY	6 cut(s)	134, 226, 251, 430, 436, 526
CviKI_1	RGCY	6 cut(s)	134, 226, 251, 430, 436, 526
CviQI	GTAC	2 cut(s)	83, 219
DinI	GGCGCC	1 cut(s)	291
DpnI	GATC	4 cut(s)	47, 357, 414, 459
DpnII	GATC	4 cut(s)	45, 355, 412, 457
EaeI	YGGCCR	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	554
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	436
Eco72I	CACGTG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	251, 323
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	438
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	6 cut(s)	24, 36, 53, 148, 448, 490
FaiI	YATR	9 cut(s)	22, 34, 51, 146, 183, 206, 422, 446, 488
FatI	CATG	6 cut(s)	20, 32, 49, 144, 444, 486
FauI	CCCGC	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	401, 518
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	383, 431
GlaI	GCGC	3 cut(s)	237, 291, 374
GluI	GCNGC	1 cut(s)	321
HaeII	RGCGCY	2 cut(s)	239, 293
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	2 cut(s)	350, 430
HhaI	GCGC	3 cut(s)	238, 292, 375
Hin1I	GRCGYC	4 cut(s)	290, 342, 441, 453
Hin1II	CATG	6 cut(s)	24, 36, 53, 148, 448, 490
Hin6I	GCGC	3 cut(s)	236, 290, 373
HinP1I	GCGC	3 cut(s)	236, 290, 373
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	3 cut(s)	234, 273, 521
Hpy188I	TCNGA	5 cut(s)	213, 355, 412, 427, 462
Hpy188III	TCNNGA	1 cut(s)	301
Hpy99I	CGWCG	5 cut(s)	65, 313, 344, 455, 458
HpyAV	CCTTC	2 cut(s)	73, 325
HpyCH4III	ACNGT	3 cut(s)	13, 101, 309
HpyCH4IV	ACGT	3 cut(s)	63, 73, 453
HpyCH4V	TGCA	4 cut(s)	20, 53, 161, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	3 cut(s)	63, 73, 453
Hsp92I	GRCGYC	4 cut(s)	290, 342, 441, 453
Hsp92II	CATG	6 cut(s)	24, 36, 53, 148, 448, 490
HspAI	GCGC	3 cut(s)	236, 290, 373
KasI	GGCGCC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	45, 355, 412, 457
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	9 cut(s)	39, 137, 154, 238, 261, 265, 310, 337, 380
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	383, 431
MaeII	ACGT	3 cut(s)	63, 73, 453
MaeIII	GTNAC	3 cut(s)	7, 147, 279
MalI	GATC	4 cut(s)	47, 357, 414, 459
MboI	GATC	4 cut(s)	45, 355, 412, 457
MboII	GAAGA	3 cut(s)	106, 133, 487
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	1 cut(s)	214
Mly113I	GGCGCC	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	3 cut(s)	248, 253, 325
MvaI	CCWGG	2 cut(s)	253, 325
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	257
NarI	GGCGCC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	4 cut(s)	45, 355, 412, 457
NlaIII	CATG	6 cut(s)	24, 36, 53, 148, 448, 490
NlaIV	GGNNCC	2 cut(s)	47, 291
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	7, 279
NspI	RCATGY	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	99
PciI	ACATGT	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 293
PflFI	GACNNNGTC	3 cut(s)	277, 344, 452
PkrI	GCNGC	1 cut(s)	322
Ple19I	CGATCG	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	293
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	273
PscI	ACATGT	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	251, 323
PspCI	CACGTG	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	251, 323
PspN4I	GGNNCC	2 cut(s)	47, 291
PspPI	GGNCC	1 cut(s)	273
PspPPI	RGGWCCY	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	3 cut(s)	277, 344, 452
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	84, 220
RsaNI	GTAC	2 cut(s)	83, 219
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	438
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	45, 355, 412, 457
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	3 cut(s)	248, 253, 325
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	1 cut(s)	379
SfoI	GGCGCC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	321, 501, 539, 545
SspDI	GGCGCC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	383, 431
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	246, 251, 323
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	13, 101, 309
TaiI	ACGT	3 cut(s)	66, 76, 456
TaqI	TCGA	3 cut(s)	230, 269, 456
TasI	AATT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	323
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	2 cut(s)	7, 279
Tsp45I	GTSAC	2 cut(s)	7, 279
TspDTI	ATGAA	2 cut(s)	133, 193
TspGWI	ACGGA	3 cut(s)	285, 305, 405
TspRI	CASTG	1 cut(s)	173
Tth111I	GACNNNGTC	3 cut(s)	277, 344, 452
VpaK11BI	GGWCC	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	383
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	2 cut(s)	383, 431
ZraI	GACGTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.