Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

17396541 .. 17399010

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25922.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTTCGCTGTACCCTGCCTCACCACCGCAAGACTTGGGTAATTCCAAGTCTCCCCAACCTCTCTAGCTTATACATCGTCGGATTCGTCGCTTCTGCCTCTCTAGTCTATCTTTACGTCGTCACCTCTTCCTCGCCATCGACACCTCACCATCGTCCGCCTTCGACCATAATCACCAAGTTGCCCACCGCCTCTGTGGCGAGGAAGGAGAGGGTTGGATCTGAAGAGATGGAGCTTTCAATCAGTCATATTGATCGACTTGAGATGGTGTTTGGAAAGCTTGATTTCTGTTTGGAAAGCCTAAACGTCGATGAGTCGCACTTCATCGAAAGAAAGACTAAAAACTGGCAAGACCGGCCCCGTTTATGGCGGTCCGGGCTTTTGCCGGTCTCGAAAATTTTTAAGGTTGAGACCGGCCCGTCTTCACACATGTCAGTCCGGGCTCAGGCTTCGATATATGGGTGCCGGTTTAGGACCGTGCCCAACCCTAATTGGTACTCTACCTCTCTTGGGGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.59

Weight (kDa)

9.79

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	462
AciI	CCGC	4 cut(s)	28, 158, 189, 370
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	13, 497
AfiI	CCNNNNNNNGG	3 cut(s)	366, 445, 510
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	240
AluBI	AGCT	3 cut(s)	69, 235, 280
AluI	AGCT	3 cut(s)	69, 235, 280
Alw26I	GTCTC	3 cut(s)	56, 394, 404
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	2 cut(s)	356, 415
ApoI	RAATTY	1 cut(s)	396
AspS9I	GGNCC	4 cut(s)	357, 372, 416, 474
AsuC2I	CCSGG	2 cut(s)	376, 440
AsuHPI	GGTGA	4 cut(s)	14, 115, 140, 166
AvaII	GGWCC	2 cut(s)	372, 474
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	414
BccI	CCATC	4 cut(s)	145, 159, 223, 259
BcnI	CCSGG	2 cut(s)	376, 440
BcoDI	GTCTC	3 cut(s)	56, 394, 404
BfaI	CTAG	2 cut(s)	66, 104
BglI	GCCNNNNNGGC	1 cut(s)	197
Bme1390I	CCNGG	2 cut(s)	376, 440
Bme18I	GGWCC	2 cut(s)	372, 474
BmgT120I	GGNCC	4 cut(s)	357, 372, 416, 474
BmiI	GGNNCC	2 cut(s)	359, 464
BmrFI	CCNGG	2 cut(s)	376, 440
BpiI	GAAGAC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	376, 440
BsaI	GGTCTC	2 cut(s)	394, 404
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 445, 510
Bse118I	RCCGGY	4 cut(s)	354, 385, 413, 465
Bse1I	ACTGG	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	366, 445, 510
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	483
BshFI	GGCC	2 cut(s)	358, 417
BshNI	GGYRCC	1 cut(s)	462
BsiSI	CCGG	6 cut(s)	355, 375, 386, 414, 439, 466
BslI	CCNNNNNNNGG	3 cut(s)	366, 445, 510
BsmAI	GTCTC	3 cut(s)	56, 394, 404
BsnI	GGCC	2 cut(s)	358, 417
Bso31I	GGTCTC	2 cut(s)	394, 404
Bsp1286I	GDGCHC	2 cut(s)	445, 483
Bsp143I	GATC	2 cut(s)	218, 253
BspACI	CCGC	4 cut(s)	28, 158, 189, 370
BspANI	GGCC	2 cut(s)	358, 417
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	359, 464
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	462
BspTNI	GGTCTC	2 cut(s)	394, 404
BsrFI	RCCGGY	4 cut(s)	354, 385, 413, 465
BsrI	ACTGG	1 cut(s)	350
BssAI	RCCGGY	4 cut(s)	354, 385, 413, 465
BssMI	GATC	2 cut(s)	218, 253
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	2 cut(s)	133, 219
BstDEI	CTNAG	1 cut(s)	444
BstKTI	GATC	2 cut(s)	221, 256
BstMAI	GTCTC	3 cut(s)	56, 394, 404
BstMBI	GATC	2 cut(s)	218, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 355, 376
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	374, 438
BstSLI	GKGCMC	1 cut(s)	483
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	358, 417
Cfr10I	RCCGGY	4 cut(s)	354, 385, 413, 465
Cfr13I	GGNCC	4 cut(s)	357, 372, 416, 474
CpoI	CGGWCCG	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	12, 496
CspI	CGGWCCG	1 cut(s)	372
CviAII	CATG	1 cut(s)	430
CviJI	RGCY	9 cut(s)	69, 235, 280, 300, 358, 379, 417, 443, 449
CviKI_1	RGCY	9 cut(s)	69, 235, 280, 300, 358, 379, 417, 443, 449
CviQI	GTAC	2 cut(s)	12, 496
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	2 cut(s)	220, 255
DpnII	GATC	2 cut(s)	218, 253
DrdI	GACNNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	133, 219
EarI	CTCTTC	2 cut(s)	133, 219
EciI	GGCGGA	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	445
Eco31I	GGTCTC	2 cut(s)	394, 404
Eco47I	GGWCC	2 cut(s)	372, 474
Eco57I	CTGAAG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	445
FaeI	CATG	1 cut(s)	433
FaiI	YATR	7 cut(s)	73, 170, 249, 367, 431, 457, 459
FatI	CATG	1 cut(s)	429
FriOI	GRGCYC	1 cut(s)	445
FspBI	CTAG	2 cut(s)	66, 104
HaeIII	GGCC	2 cut(s)	358, 417
HapII	CCGG	6 cut(s)	355, 375, 386, 414, 439, 466
Hin1II	CATG	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	2 cut(s)	84, 314
HpaII	CCGG	6 cut(s)	355, 375, 386, 414, 439, 466
HphI	GGTGA	4 cut(s)	14, 115, 140, 166
Hpy188I	TCNGA	2 cut(s)	83, 223
Hpy188III	TCNNGA	1 cut(s)	391
Hpy99I	CGWCG	4 cut(s)	83, 92, 122, 311
HpyAV	CCTTC	2 cut(s)	171, 199
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	2 cut(s)	117, 306
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 355, 376
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	2 cut(s)	117, 306
Hsp92II	CATG	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	218, 253
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	9 cut(s)	29, 331, 368, 388, 399, 427, 431, 452, 479
MaeI	CTAG	2 cut(s)	66, 104
MaeII	ACGT	2 cut(s)	117, 306
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	220, 255
MboI	GATC	2 cut(s)	218, 253
MboII	GAAGA	3 cut(s)	120, 236, 414
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	445, 483
MluCI	AATT	3 cut(s)	42, 396, 490
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	61, 196
MseI	TTAA	2 cut(s)	402, 516
MspI	CCGG	6 cut(s)	355, 375, 386, 414, 439, 466
MspR9I	CCNGG	2 cut(s)	376, 440
MwoI	GCNNNNNNNGC	3 cut(s)	197, 355, 376
NciI	CCSGG	2 cut(s)	376, 440
NdeII	GATC	2 cut(s)	218, 253
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	2 cut(s)	359, 464
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	433
PciI	ACATGT	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	359, 464
PspPI	GGNCC	4 cut(s)	357, 372, 416, 474
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	13, 497
RsaNI	GTAC	2 cut(s)	12, 496
Rsr2I	CGGWCCG	1 cut(s)	372
RsrII	CGGWCCG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	402, 516
Sau3AI	GATC	2 cut(s)	218, 253
Sau96I	GGNCC	4 cut(s)	357, 372, 416, 474
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	376, 440
SduI	GDGCHC	2 cut(s)	445, 483
SinI	GGWCC	2 cut(s)	372, 474
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	3 cut(s)	42, 396, 490
SsiI	CCGC	4 cut(s)	28, 158, 189, 370
SspMI	CTAG	2 cut(s)	66, 104
StyD4I	CCNGG	2 cut(s)	374, 438
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	2 cut(s)	120, 309
TaqI	TCGA	7 cut(s)	140, 164, 256, 309, 327, 392, 452
TasI	AATT	3 cut(s)	42, 396, 490
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	2 cut(s)	402, 516
Tru9I	TTAA	2 cut(s)	402, 516
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	372, 474
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	2 cut(s)	66, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.