Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

20959421 .. 20960529

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23420.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACTAGGCTCCACATAAGCAAATTCATTAATTATTGCATATTAATATATCATAACAAGTTGTATGTCATAATTGTTTTCCAAATTTGCATAAAATTAGACGATTTCAATTTAATCCTGTCATTTTCTTACCAAATGGATACTGAAAAGGAACTATGGACTAATTTACATAAAAACATAGGTAAATTATTTGGACATATGCAAAATAATTTACCTACAAAAAAAAATCCCACATCGCTCAGGAGAGTGGATCCTGTAAGCCTTATATGTATATTTCCATCTCTACCTAGCACGAGGCCTTTTGGGAAGTCACTGGCTTCGAGTTCCATCGGAACTCTGAAGAAGTTGCTCCTGAGTTCCCAGAAACAAAACCGTGAGGGTGTGGTCGGGGCCCAAAGTGGACAATATCGTGCTACGGTAGAGTCGACGGATGTGTGCCGACGAGGACGTTGGGCCCCTAAGGGGGGGTGGATTGTAACATCCCATATCGCCTTTCGGGAACTCACTGGCTTTGGATTCCATAGGAACTCCGAAGTTAAGCGAGTTCACACGAGAGCAATCCTAGGATGGGTGACCCACTGGGAAGTTGGCCCAAAGCGGACAATATCATGCTATGGTGGAGTCGAGCTCGGGATGTGGTGGGGGCCCAAATCGGGATGTGACACATTTGATATAATAAAATATAATTGCACATATATATTACTAAAATGTGCCCAATATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.58

Weight (kDa)

9.72

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	2 cut(s)	245, 258
AcsI	RAATTY	2 cut(s)	23, 84
AcuI	CTGAAG	1 cut(s)	359
AfiI	CCNNNNNNNGG	5 cut(s)	462, 463, 464, 568, 653
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	628
AluI	AGCT	1 cut(s)	628
Alw21I	GWGCWC	1 cut(s)	630
AlwI	GGATC	2 cut(s)	245, 258
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	5 cut(s)	296, 390, 453, 589, 644
ApaI	GGGCCC	3 cut(s)	394, 457, 648
ApoI	RAATTY	2 cut(s)	23, 84
AseI	ATTAAT	2 cut(s)	30, 44
AspA2I	CCTAGG	1 cut(s)	562
AspS9I	GGNCC	7 cut(s)	390, 391, 453, 454, 590, 644, 645
AsuHPI	GGTGA	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	629
AvrII	CCTAGG	1 cut(s)	562
AxyI	CCTNAGG	1 cut(s)	459
BaeGI	GKGCMC	4 cut(s)	394, 457, 648, 715
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	4 cut(s)	394, 457, 630, 648
BauI	CACGAG	2 cut(s)	292, 550
Bbv12I	GWGCWC	1 cut(s)	630
BccI	CCATC	3 cut(s)	286, 335, 561
BciVI	GTATCC	1 cut(s)	133
BfaI	CTAG	3 cut(s)	6, 288, 563
BfuI	GTATCC	1 cut(s)	133
BlnI	CCTAGG	1 cut(s)	562
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	7 cut(s)	390, 391, 453, 454, 590, 644, 645
BmiI	GGNNCC	8 cut(s)	11, 252, 391, 392, 455, 456, 645, 646
BmrI	ACTGGG	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	589
BplI	GAGNNNNNCTC	2 cut(s)	612, 644
Bpu10I	CCTNAGC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	5 cut(s)	462, 463, 464, 568, 653
Bse1I	ACTGG	3 cut(s)	318, 511, 584
Bse21I	CCTNAGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	5 cut(s)	436, 479, 572, 639, 662
BseLI	CCNNNNNNNGG	5 cut(s)	462, 463, 464, 568, 653
BseMII	CTCAG	2 cut(s)	253, 344
BseNI	ACTGG	3 cut(s)	318, 511, 584
BseSI	GKGCMC	4 cut(s)	394, 457, 648, 715
BshFI	GGCC	5 cut(s)	298, 392, 455, 591, 646
BsiHKAI	GWGCWC	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	629
BslI	CCNNNNNNNGG	5 cut(s)	462, 463, 464, 568, 653
BsnI	GGCC	5 cut(s)	298, 392, 455, 591, 646
BsoBI	CYCGRG	1 cut(s)	629
Bsp120I	GGGCCC	3 cut(s)	390, 453, 644
Bsp1286I	GDGCHC	5 cut(s)	394, 457, 630, 648, 715
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	5 cut(s)	298, 392, 455, 591, 646
BspCNI	CTCAG	2 cut(s)	252, 345
BspLI	GGNNCC	8 cut(s)	11, 252, 391, 392, 455, 456, 645, 646
BspPI	GGATC	2 cut(s)	245, 258
BsrI	ACTGG	3 cut(s)	318, 511, 584
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	1 cut(s)	250
BssSI	CACGAG	2 cut(s)	292, 550
BssT1I	CCWWGG	1 cut(s)	562
Bst2BI	CACGAG	2 cut(s)	292, 550
Bst4CI	ACNGT	2 cut(s)	374, 418
BstDEI	CTNAG	3 cut(s)	239, 353, 459
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	5 cut(s)	436, 479, 572, 639, 662
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstPI	GGTNACC	1 cut(s)	571
BstSLI	GKGCMC	4 cut(s)	394, 457, 648, 715
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
Bsu36I	CCTNAGG	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	5 cut(s)	298, 392, 455, 591, 646
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	5 cut(s)	436, 479, 572, 639, 662
BtsIMutI	CAGTG	3 cut(s)	311, 504, 577
Cfr13I	GGNCC	7 cut(s)	390, 391, 453, 454, 590, 644, 645
CviAII	CATG	1 cut(s)	609
DdeI	CTNAG	3 cut(s)	239, 353, 459
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	4 cut(s)	394, 457, 630, 648
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	628
EcoO109I	RGGNCCY	3 cut(s)	390, 454, 644
EcoO65I	GGTNACC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	562
EcoT38I	GRGCYC	4 cut(s)	394, 457, 630, 648
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	1 cut(s)	612
FatI	CATG	1 cut(s)	608
FauNDI	CATATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	425
FokI	GGATG	5 cut(s)	443, 466, 579, 646, 669
FriOI	GRGCYC	4 cut(s)	394, 457, 630, 648
FspBI	CTAG	3 cut(s)	6, 288, 563
HaeIII	GGCC	5 cut(s)	298, 392, 455, 591, 646
Hin1II	CATG	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	422, 516, 621
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	3 cut(s)	401, 426, 547
Hpy188I	TCNGA	3 cut(s)	332, 339, 532
Hpy188III	TCNNGA	5 cut(s)	241, 352, 497, 631, 654
Hpy8I	GTNNAC	3 cut(s)	401, 426, 547
Hpy99I	CGWCG	2 cut(s)	430, 444
HpyCH4III	ACNGT	2 cut(s)	374, 418
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	39, 90, 202, 690
HpyF3I	CTNAG	3 cut(s)	239, 353, 459
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	1 cut(s)	612
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	2 cut(s)	15, 354
LpnPI	CCDG	8 cut(s)	131, 226, 267, 299, 365, 374, 492, 565
MaeI	CTAG	3 cut(s)	6, 288, 563
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	4 cut(s)	309, 475, 571, 659
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	352
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	5 cut(s)	394, 457, 630, 648, 715
MlyI	GAGTC	2 cut(s)	431, 630
MnlI	CCTC	3 cut(s)	288, 370, 437
MseI	TTAA	4 cut(s)	30, 44, 113, 537
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	612
NlaIV	GGNNCC	8 cut(s)	11, 252, 391, 392, 455, 456, 645, 646
NmuCI	GTSAC	3 cut(s)	309, 571, 659
PceI	AGGCCT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	516
PleI	GAGTC	2 cut(s)	430, 629
PpsI	GAGTC	2 cut(s)	430, 629
PshBI	ATTAAT	2 cut(s)	30, 44
Psp124BI	GAGCTC	1 cut(s)	630
PspEI	GGTNACC	1 cut(s)	571
PspN4I	GGNNCC	8 cut(s)	11, 252, 391, 392, 455, 456, 645, 646
PspOMI	GGGCCC	3 cut(s)	390, 453, 644
PspPI	GGNCC	7 cut(s)	390, 391, 453, 454, 590, 644, 645
PsuI	RGATCY	1 cut(s)	250
SacI	GAGCTC	1 cut(s)	630
SalI	GTCGAC	1 cut(s)	424
SaqAI	TTAA	4 cut(s)	30, 44, 113, 537
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	7 cut(s)	390, 391, 453, 454, 590, 644, 645
SchI	GAGTC	2 cut(s)	431, 630
SduI	GDGCHC	5 cut(s)	394, 457, 630, 648, 715
SetI	ASST	5 cut(s)	184, 217, 289, 451, 630
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	3 cut(s)	6, 288, 563
SstI	GAGCTC	1 cut(s)	630
StuI	AGGCCT	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	2 cut(s)	374, 418
TaiI	ACGT	1 cut(s)	451
TaqI	TCGA	3 cut(s)	320, 425, 624
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	4 cut(s)	30, 44, 113, 537
Tru9I	TTAA	4 cut(s)	30, 44, 113, 537
TscAI	CASTG	3 cut(s)	318, 511, 584
TseFI	GTSAC	3 cut(s)	309, 571, 659
Tsp45I	GTSAC	3 cut(s)	309, 571, 659
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	3 cut(s)	318, 511, 584
VspI	ATTAAT	2 cut(s)	30, 44
XapI	RAATTY	2 cut(s)	23, 84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XmaJI	CCTAGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	3 cut(s)	6, 288, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.